Lcy07g002310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g002310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	Chr07: 9086981 .. 9087664 (-)
RNA-Seq Expression	Lcy07g002310
Synteny	Lcy07g002310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTATGGGAGAAGGCGTTCAAAATTCAAAGCAAAGAAGAGCTGGCCAGAGTGGCGCAAATTTTCTGGACAATATGGGAAGCTAGGAATCAAATTAATCACAGTACGTCCAAACCAGACCCAACCCCATGCATCAGAGATATTGAGAGAAGGATTGAAAGCTTATCTGAGGAGAAGAAGAAGTTGCAAACTTCAAGATCATCGGAGAACCATCCTAGTCACATCAGTTGGAAGCCGTCGGAGATAGAATGCTGGACAATGAATTCGGATGCGGCGTGGTTCGGAGCCTCAAAGTCAGGAGGAATCGACTGGATCATTCGTGACTCGGATGGGTCTCTAATTGGAGCAGGCTGTAAGAAATTTTTTAAGCACGAGCCTATAAAGGTGCTGGAATCAAAAGCAATCAAATTAGGGCTGGAATGCCTTATCGGTATCCTCAACGCCGACGAGAGTAGCAGGGCGAAGCCGATCGTGGTTGAATCCAACTCGACAGAAGTGGTGAACTTGATTAATCACAAAGCGCAGGACTTGTCGGAGATTTCTTGCATCATCGATGAAGTCGAAGAGCTGGCGCTTCCTGCCAAGGTCACCTCCTTCTCGTATTGCCGAAGGGAATGTAATCTTTTGGCGCACTTTCTTGCACACGCAATGCTGTTAACGGGGATTTCGTATTTTTTGTAA

mRNA sequence

ATGGATCTATGGGAGAAGGCGTTCAAAATTCAAAGCAAAGAAGAGCTGGCCAGAGTGGCGCAAATTTTCTGGACAATATGGGAAGCTAGGAATCAAATTAATCACAGTACGTCCAAACCAGACCCAACCCCATGCATCAGAGATATTGAGAGAAGGATTGAAAGCTTATCTGAGGAGAAGAAGAAGTTGCAAACTTCAAGATCATCGGAGAACCATCCTAGTCACATCAGTTGGAAGCCGTCGGAGATAGAATGCTGGACAATGAATTCGGATGCGGCGTGGTTCGGAGCCTCAAAGTCAGGAGGAATCGACTGGATCATTCGTGACTCGGATGGGTCTCTAATTGGAGCAGGCTGTAAGAAATTTTTTAAGCACGAGCCTATAAAGGTGCTGGAATCAAAAGCAATCAAATTAGGGCTGGAATGCCTTATCGGTATCCTCAACGCCGACGAGAGTAGCAGGGCGAAGCCGATCGTGGTTGAATCCAACTCGACAGAAGTGGTGAACTTGATTAATCACAAAGCGCAGGACTTGTCGGAGATTTCTTGCATCATCGATGAAGTCGAAGAGCTGGCGCTTCCTGCCAAGGTCACCTCCTTCTCGTATTGCCGAAGGGAATGTAATCTTTTGGCGCACTTTCTTGCACACGCAATGCTGTTAACGGGGATTTCGTATTTTTTGTAA

Coding sequence (CDS)

ATGGATCTATGGGAGAAGGCGTTCAAAATTCAAAGCAAAGAAGAGCTGGCCAGAGTGGCGCAAATTTTCTGGACAATATGGGAAGCTAGGAATCAAATTAATCACAGTACGTCCAAACCAGACCCAACCCCATGCATCAGAGATATTGAGAGAAGGATTGAAAGCTTATCTGAGGAGAAGAAGAAGTTGCAAACTTCAAGATCATCGGAGAACCATCCTAGTCACATCAGTTGGAAGCCGTCGGAGATAGAATGCTGGACAATGAATTCGGATGCGGCGTGGTTCGGAGCCTCAAAGTCAGGAGGAATCGACTGGATCATTCGTGACTCGGATGGGTCTCTAATTGGAGCAGGCTGTAAGAAATTTTTTAAGCACGAGCCTATAAAGGTGCTGGAATCAAAAGCAATCAAATTAGGGCTGGAATGCCTTATCGGTATCCTCAACGCCGACGAGAGTAGCAGGGCGAAGCCGATCGTGGTTGAATCCAACTCGACAGAAGTGGTGAACTTGATTAATCACAAAGCGCAGGACTTGTCGGAGATTTCTTGCATCATCGATGAAGTCGAAGAGCTGGCGCTTCCTGCCAAGGTCACCTCCTTCTCGTATTGCCGAAGGGAATGTAATCTTTTGGCGCACTTTCTTGCACACGCAATGCTGTTAACGGGGATTTCGTATTTTTTGTAA

Protein sequence

MDLWEKAFKIQSKEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEKKKLQTSRSSENHPSHISWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIKLGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKVTSFSYCRRECNLLAHFLAHAMLLTGISYFL

Homology

[Close]

BLAST of Lcy07g002310 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 64/215 (29.77%), Postives = 101/215 (46.98%), Query Frame = 0


Query: 13  KEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIES--LSEEKKKLQTSRSSE 72
           +EE  R   I W IWE RN+       P+     RDI+  I+   ++   +       S 
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPE----TRDIQLAIDRYIINSAGRNTNLKGKST 65

Query: 73  NHPSHI----------SWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCK 132
           N   H+           WKP     W +N++AAW   + +GGI WI+RD  G +I A C+
Sbjct: 66  NKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCR 125

Query: 133 KFFKHEPIKVLESKAIKLGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSE 192
                  I  LE  AI  GL  +            +PI +ES+S E ++L++ + QD +E
Sbjct: 126 IIRAERNITYLEVMAICEGLRAI-------RQEHCRPIHLESDSLEAIHLLHRQCQDQTE 185

Query: 193 ISCIIDEVEELALPAKVTSFSYCRRECNLLAHFLA 216
           I  +++E+ ++    ++ S  +  RE N +AH LA
Sbjct: 186 IIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLA 209

[Close]

BLAST of Lcy07g002310 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.8e-16
Identity = 59/195 (30.26%), Postives = 103/195 (52.82%), Query Frame = 0


Query: 24  WTIWEARNQINHSTSKPDPTPCIRDIERRI-ESLSEEKKKLQTSRSSENHPSHISWKPSE 83
           W IW  RN +         +  I+ + + + ES  + +  L     + N  + + W+P  
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLN--NKLKWEPPP 77

Query: 84  IECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIKLGLEC 143
           +  WT+N+DA+W  ++  GGI WIIR  DG ++ AG +       +K+LE+ AI  GL  
Sbjct: 78  MHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN 137

Query: 144 L--IGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKVTSF 203
           L  +G+L        +P+ +E++S EV +L+N K +DL++   +++E+  L    ++ +F
Sbjct: 138 LTNLGVL--------RPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 197

Query: 204 SYCRRECNLLAHFLA 216
           +   RE N  AH LA
Sbjct: 198 AKVGRETNGCAHSLA 202

[Close]

BLAST of Lcy07g002310 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 64/214 (29.91%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 13  KEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEKKKLQTSRSSENH 72
           +EE  R   I W IWE RN+        +       I+R I  ++   +       S N 
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI--INSAGRDTNLKGKSANK 65

Query: 73  PSHI----------SWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKF 132
             H+           WKP     W +N+DAAW   + +GGI WI+RD  G +I A C+  
Sbjct: 66  DLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRII 125

Query: 133 FKHEPIKVLESKAIKLGLECL-IGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEI 192
                I  LE  AI  GL  +        +    +PI +ES+S E ++L++ + QD +EI
Sbjct: 126 RTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 193 SCIIDEVEELALPAKVTSFSYCRRECNLLAHFLA 216
             +++E+ ++    K+ S  +  RE N +AH LA
Sbjct: 186 IWLLEEIWQMMEDMKIVSMRHISREANKVAHDLA 217

[Close]

BLAST of Lcy07g002310 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.1e-13
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 0


Query: 22  IFWTIWEARNQINHSTSKPDPTPCIRDIERRIES-LSEEKKKL--QTSRSSENHPSHISW 81
           + W+IW  RNQI HST +    PC + I    ES + E    L    +   +N P  + W
Sbjct: 22  LLWSIWTYRNQIVHSTIE---QPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVGW 81

Query: 82  KPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIKL 141
            P     W +N DA W  +  +GG+ WI+RDS+G  I A C K        + +S  ++ 
Sbjct: 82  TPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLK-------ALSQSLTLEA 141

Query: 142 GLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKVT 201
           G++                I +ES+  EVVN+IN  +  L+E+S I++++ +      + 
Sbjct: 142 GIK----------------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIE 192

Query: 202 SFSYCRRECNLLAHFLA 216
            F +   + N +AH +A
Sbjct: 202 GFKHLPMKANGVAHGIA 192

[Close]

BLAST of Lcy07g002310 vs. ExPASy TrEMBL
Match: B8AP27 (F-box domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12930 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-12
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = 0


Query: 19  VAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEKKKLQTSRSSENHPSHISW 78
           +A  FW IWEARN   ++     P   +  I   ++ + +   K    +  EN  +   W
Sbjct: 617 LAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGENTQAIPRW 676

Query: 79  KPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIKL 138
           +P     W +NSDAA F +S++ G+  +IRD+ G  + A C +        VL   A  L
Sbjct: 677 QPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVA-CSEMISD---VVLPELAEAL 736

Query: 139 GLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKVT 198
            +   +G+    +    + IV+ S+   V+  I    +D S + C+I+++++LA    + 
Sbjct: 737 AIRRALGLA---KEEGLQHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLC 796

Query: 199 SFSYCRRECNLLAHFLA 216
           SF +  R  NL AH LA
Sbjct: 797 SFMHVNRLSNLAAHSLA 806

[Close]

BLAST of Lcy07g002310 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-16
Identity = 64/215 (29.77%), Postives = 101/215 (46.98%), Query Frame = 0


Query: 13  KEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIES--LSEEKKKLQTSRSSE 72
           +EE  R   I W IWE RN+       P+     RDI+  I+   ++   +       S 
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPE----TRDIQLAIDRYIINSAGRNTNLKGKST 65

Query: 73  NHPSHI----------SWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCK 132
           N   H+           WKP     W +N++AAW   + +GGI WI+RD  G +I A C+
Sbjct: 66  NKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCR 125

Query: 133 KFFKHEPIKVLESKAIKLGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSE 192
                  I  LE  AI  GL  +            +PI +ES+S E ++L++ + QD +E
Sbjct: 126 IIRAERNITYLEVMAICEGLRAI-------RQEHCRPIHLESDSLEAIHLLHRQCQDQTE 185

Query: 193 ISCIIDEVEELALPAKVTSFSYCRRECNLLAHFLA 216
           I  +++E+ ++    ++ S  +  RE N +AH LA
Sbjct: 186 IIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLA 209

[Close]

BLAST of Lcy07g002310 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-15
Identity = 59/195 (30.26%), Postives = 103/195 (52.82%), Query Frame = 0


Query: 24  WTIWEARNQINHSTSKPDPTPCIRDIERRI-ESLSEEKKKLQTSRSSENHPSHISWKPSE 83
           W IW  RN +         +  I+ + + + ES  + +  L     + N  + + W+P  
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLN--NKLKWEPPP 77

Query: 84  IECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIKLGLEC 143
           +  WT+N+DA+W  ++  GGI WIIR  DG ++ AG +       +K+LE+ AI  GL  
Sbjct: 78  MHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN 137

Query: 144 L--IGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKVTSF 203
           L  +G+L        +P+ +E++S EV +L+N K +DL++   +++E+  L    ++ +F
Sbjct: 138 LTNLGVL--------RPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 197

Query: 204 SYCRRECNLLAHFLA 216
           +   RE N  AH LA
Sbjct: 198 AKVGRETNGCAHSLA 202

[Close]

BLAST of Lcy07g002310 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-15
Identity = 64/214 (29.91%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 13  KEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEKKKLQTSRSSENH 72
           +EE  R   I W IWE RN+        +       I+R I  ++   +       S N 
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYI--INSAGRDTNLKGKSANK 65

Query: 73  PSHI----------SWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKF 132
             H+           WKP     W +N+DAAW   + +GGI WI+RD  G +I A C+  
Sbjct: 66  DLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRII 125

Query: 133 FKHEPIKVLESKAIKLGLECL-IGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEI 192
                I  LE  AI  GL  +        +    +PI +ES+S E ++L++ + QD +EI
Sbjct: 126 RTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 193 SCIIDEVEELALPAKVTSFSYCRRECNLLAHFLA 216
             +++E+ ++    K+ S  +  RE N +AH LA
Sbjct: 186 IWLLEEIWQMMEDMKIVSMRHISREANKVAHDLA 217

[Close]

BLAST of Lcy07g002310 vs. NCBI nr
Match: XP_015388376.1 (uncharacterized protein LOC102612209 [Citrus sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-14
Identity = 53/202 (26.24%), Postives = 102/202 (50.50%), Query Frame = 0


Query: 11  QSKEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEKKKLQTSRSSE 70
           + K+EL ++  + W IW ARN+  +   + +P          +ES    K +   +RS  
Sbjct: 110 RKKKELEQIIAVCWAIWYARNRFIYEGKQEEPKLTAARASAIVESYRRIKIQNGPARSIH 169

Query: 71  NHPSHISWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKV 130
           +  S   WKP     + +N DAA   +    G+  +I +S+G +I A  K+      +  
Sbjct: 170 HRNSQQIWKPPPDGKYKVNVDAAIQMSGLKAGLGVVIGNSNGKIIAAAVKRVSYKGTVAC 229

Query: 131 LESKAIKLGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEE 190
           +E++AI  G++         + +   P+++ES+STEVV L+ ++   ++EIS  ++E+++
Sbjct: 230 MEAEAILFGIQ-------VAQQAECLPMIIESDSTEVVELVLNRKGSMTEISWTVEEIKQ 289

Query: 191 LALPAKVTSFSYCRRECNLLAH 213
             +    +S  +  R+CN +AH
Sbjct: 290 RLMNHNTSSIQFAPRKCNAIAH 304

[Close]

BLAST of Lcy07g002310 vs. NCBI nr
Match: XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina])

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-14
Identity = 59/219 (26.94%), Postives = 98/219 (44.75%), Query Frame = 0


Query: 1   MDLWEKAFKIQSKEELARVAQIFWTIWEARNQINHSTSKPDPTPCIRDIERRIESLSEEK 60
           + + +   K  S  E+  VA ++W IW ARN++     + +P   I   +  +E+     
Sbjct: 28  LSVMQSLIKKMSMREVEFVAVVWWEIWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVH 87

Query: 61  KKLQTSRSSENHPSHISWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCK 120
            K QTS+ SE+      W P  +  + +N DAA     +  G+  +IR+  G +I A  K
Sbjct: 88  GKEQTSKRSEDVSKQDQWFPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQIIVAAVK 147

Query: 121 KFFKHEPIKVLESKAIKLGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSE 180
                + +   E++A+K GLE  +        +R   +++E++  EV NL N K     E
Sbjct: 148 STKFQDNVTAAEAEAVKWGLEIAL-------EARLATVIIETDCIEVANLANSKTSSRKE 207

Query: 181 ISCIIDEVEELALPAKVTSFSYCRRECNLLAHFLAHAML 220
           I   I ++       +  S  +  R CN  AH LA   L
Sbjct: 208 IMWTISDIHSYKEKFQSLSIQHVPRCCNSCAHSLAKRAL 239

[Close]

BLAST of Lcy07g002310 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 48/219 (21.92%), Postives = 94/219 (42.92%), Query Frame = 0


Query: 8   FKIQSKEELARVAQ-----IFWTIWEARNQI--NHSTSKPDPT--PCIRDIERRIESLSE 67
           F++ +   + RV +     + W IW++ N +  NH+ +K   T    + D +  +++   
Sbjct: 28  FQMHNDSRVDRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMT 87

Query: 68  EKKKLQTSRSSENHPSHISWKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAG 127
            ++  Q    + +   +  W P   +    N DA+    +   G+ WI+R+S G++I  G
Sbjct: 88  NEQ--QNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECG 147

Query: 128 CKKFFKHEPIKVLESKAIKLGLEC--LIGILNADESSRAKPIVVESNSTEVVNLINHKAQ 187
             KF         + +      EC  LI  + A      K ++ E ++  +  +IN K+ 
Sbjct: 148 MGKF---------QGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSS 207

Query: 188 DLSEISCIIDEVEELALPAKVTSFSYCRRECNLLAHFLA 216
           +   +   +D ++      +   FS+  RE N  A FLA
Sbjct: 208 N-PRLQHFLDTIQSWIPSFESIEFSFKHREQNGCADFLA 234

[Close]

BLAST of Lcy07g002310 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04
Identity = 33/150 (22.00%), Postives = 64/150 (42.67%), Query Frame = 0


Query: 78  WKPSEIECWTMNSDAAWFGASKSGGIDWIIRDSDGSLIGAGCKKFFKHEPIKVLESKAIK 137
           W+    E    N D +     +  G+ WIIR+S G+ +  GC KF   + IK  E  A+ 
Sbjct: 30  WQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTALI 89

Query: 138 LGLECLIGILNADESSRAKPIVVESNSTEVVNLINHKAQDLSEISCIIDEVEELALPAKV 197
             ++C   +         + +  E ++  V  LI +K  +   +   ++ +++ +     
Sbjct: 90  WAIQCAWDL-------GYRRVEFEGDNITVNRLIRNKETN-PRLRYYLEFIQQWSKAFTT 149

Query: 198 TSFSYCRRECNLLAHFLAHAMLLTGISYFL 228
             F++  RE N+    LA   +   I++ L
Sbjct: 150 VKFTFRHREQNVCVDVLAKKAVANHINHTL 171

The following BLAST results are available for this feature:

BLAST of Lcy07g002310 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g002310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	1.4e-16	29.77	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	8.8e-16	30.26	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	1.1e-15	29.91	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D4B6	9.1e-13	29.44	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
B8AP27	4.5e-12	28.43	F-box domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12...	[more]

BLAST of Lcy07g002310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143535.1	2.8e-16	29.77	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	1.8e-15	30.26	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	2.4e-15	29.91	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_015388376.1	2.0e-14	26.24	uncharacterized protein LOC102612209 [Citrus sinensis]	[more]
XP_024033146.1	7.6e-14	26.94	uncharacterized protein LOC112095446 [Citrus clementina]	[more]

BLAST of Lcy07g002310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65005.1	1.6e-06	21.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G23320.1	3.4e-04	22.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 75..217
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 75..217
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 89..216 e-value: 1.9E-16 score: 60.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 86..221 e-value: 1.8E-9 score: 39.7
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 89..216 e-value: 1.09216E-15 score: 68.88
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 85..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g002310.1	Lcy07g002310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity