Lcy07g001280 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g001280
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein rough sheath 2 homolog
LocationChr07: 3361595 .. 3363022 (-)
RNA-Seq ExpressionLcy07g001280
SyntenyLcy07g001280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGACAGGAAGCCGACAAGCTACAGATCTGGGCGCGGTAGTCGTAGCCCAGCCACCGGCACAGTTCAACTGCAGCTCGCCCGTCGTAGTCGTCCGTTCGTGATCCTCGTGCTGGAGATCTCGAGGATCTTGAAGAAATCTCGCCAGATCTGGGCGTGGGCGTGCGTGCGTGAGAAGGAGGGACAATGGGTGTGAGATCTGGGCGGGCGAACAGGCGTGAGAGAGACGGTGAGGGAGAGAAAGAGAGGAATGATGAGGGAGAGAGAAAGATAGAAGAAGAAAGAAAAAGAAAGAAAGAAAGAGGAAGAAAAGAAAAGAAAAAGAAAAGTTGGAGAAGATAGAAGGAAAGGAAAAAAAAAATCATTGCCGGCCGCCGGCCATGGAGGAAGATTGAAGAAGAAGAAGTAGTAGAAAGAGGAGGATGAGGAAGAAGAAGATGGAAGAGAGAAGAATAAAAAATAAAATAAAATAAAAAAAAATATTAATATTTGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTTACACTTTGGTTCCTAAGTTTTAAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGCAGCATTTTGGTCCCTGCCGTCTAATTTGTCGTTAGATGCTAACAAATTGCTGACATGGCCACATTTTTTTAATTAAAAAAATTATATTTTTTATTTTTAAAATAAAATTAAATAAAAACAATAAAATATTATTATTTTAATTATTTTTTAATCCCTTTCTTCTTCTCCACTTCTTCATCCTCTTCCCTCCACCCTATCTTCATCTTCTTCAAATCTCCTTGCTGGCGACCGGCGGCCGACCGGCGACTGTAACTTTTTTTTTTCTCTTTTCTTCTTCTCTCTTACCCCATTTTTCTTCTTTTCTTTTTTTTTTTAAAAAACAAATATAGAAGACTCCCTCCTCCTCCATCCTCCATTTCCGGACGGAAACAGAGTTTCCTCGCTAGAGAAGGCGCTCCAGGGTCCCTACGACCATATCCTCGAGACCTTCACTGAGAAGTACGTCCAGCCGAAGCTCTACGCCGCTGCCTTCCAGTCTCCTCCACCGCTGCCCTTGGCCAACGTCATGTCTCGCCTTCCCGTCCCCGACGTCAATCTGGTCCTTTCACTCGGATCCGTCAGCTCCACGACATCGTCTTCCATCGTCCTCCCTCTGTGGATGAACGTCAACTCCACCAGAACCGCTTCCTCTTCCACCTCGTCGACCACGCCCTTGCCATCGGTGAGCCTCACGCTATCTCCCTCTGAACCTGCCGCTCTCGACTTGGAAGAAGGCTGGCAGATCGGAGCCTTAGTCCAGCAGATCGGAGCAGATCGGAAGAAGGTAGCCCTCGCCGTTGTTCAGCAGATCGGAGCCCTAGTCCAGTACTGCAAGGAGTTGGAAGAAGGTCGGTAG

mRNA sequence

ATGTTCGACAGGAAGCCGACAAGCTACAGATCTGGGCGCGGTAGTCGTAGCCCAGCCACCGGCACAGTTCAACTGCAGCTCGCCCGTCGTAGTCGTCCGTTCGTGATCCTCGTGCTGGAGATCTCGAGGATCTTGAAGAAATCTCGCCAGATCTGGGCGTGGGCGTGCGTGCAAGACTCCCTCCTCCTCCATCCTCCATTTCCGGACGGAAACAGAGTTTCCTCGCTAGAGAAGGCGCTCCAGGGTCCCTACGACCATATCCTCGAGACCTTCACTGAGAAGTACGTCCAGCCGAAGCTCTACGCCGCTGCCTTCCAGTCTCCTCCACCGCTGCCCTTGGCCAACGTCATGTCTCGCCTTCCCGTCCCCGACGTCAATCTGGTCCTTTCACTCGGATCCGTCAGCTCCACGACATCGTCTTCCATCGTCCTCCCTCTGTGGATGAACGTCAACTCCACCAGAACCGCTTCCTCTTCCACCTCGTCGACCACGCCCTTGCCATCGGTGAGCCTCACGCTATCTCCCTCTGAACCTGCCGCTCTCGACTTGGAAGAAGGCTGGCAGATCGGAGCCTTAGTCCAGCAGATCGGAGCAGATCGGAAGAAGGTAGCCCTCGCCGTTGTTCAGCAGATCGGAGCCCTAGTCCAGTACTGCAAGGAGTTGGAAGAAGGTCGGTAG

Coding sequence (CDS)

ATGTTCGACAGGAAGCCGACAAGCTACAGATCTGGGCGCGGTAGTCGTAGCCCAGCCACCGGCACAGTTCAACTGCAGCTCGCCCGTCGTAGTCGTCCGTTCGTGATCCTCGTGCTGGAGATCTCGAGGATCTTGAAGAAATCTCGCCAGATCTGGGCGTGGGCGTGCGTGCAAGACTCCCTCCTCCTCCATCCTCCATTTCCGGACGGAAACAGAGTTTCCTCGCTAGAGAAGGCGCTCCAGGGTCCCTACGACCATATCCTCGAGACCTTCACTGAGAAGTACGTCCAGCCGAAGCTCTACGCCGCTGCCTTCCAGTCTCCTCCACCGCTGCCCTTGGCCAACGTCATGTCTCGCCTTCCCGTCCCCGACGTCAATCTGGTCCTTTCACTCGGATCCGTCAGCTCCACGACATCGTCTTCCATCGTCCTCCCTCTGTGGATGAACGTCAACTCCACCAGAACCGCTTCCTCTTCCACCTCGTCGACCACGCCCTTGCCATCGGTGAGCCTCACGCTATCTCCCTCTGAACCTGCCGCTCTCGACTTGGAAGAAGGCTGGCAGATCGGAGCCTTAGTCCAGCAGATCGGAGCAGATCGGAAGAAGGTAGCCCTCGCCGTTGTTCAGCAGATCGGAGCCCTAGTCCAGTACTGCAAGGAGTTGGAAGAAGGTCGGTAG

Protein sequence

MFDRKPTSYRSGRGSRSPATGTVQLQLARRSRPFVILVLEISRILKKSRQIWAWACVQDSLLLHPPFPDGNRVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQSPPPLPLANVMSRLPVPDVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDLEEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR
Homology
BLAST of Lcy07g001280 vs. ExPASy TrEMBL
Match: A0A6J1GCE3 (protein rough sheath 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452685 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 6.2e-46
Identity = 117/162 (72.22%), Postives = 121/162 (74.69%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS-PPPLPLANVMSRLPVP 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+AAFQS PPP PLANVM RLPVP
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSAAFQSPPPPPPLANVMPRLPVP 186

Query: 129 DVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDL 188
           D + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD 
Sbjct: 187 DADPVLSLGSVNSTTSSSTVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDS 246

Query: 189 EEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
           E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 EMN-----------------RLLPVQQMGALVLYCKELEEGR 271

BLAST of Lcy07g001280 vs. ExPASy TrEMBL
Match: A0A6J1KCH4 (protein rough sheath 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492624 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-45
Identity = 115/162 (70.99%), Postives = 120/162 (74.07%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS-PPPLPLANVMSRLPVP 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+ AFQS PPP PLAN+M RLPVP
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSTAFQSPPPPPPLANLMPRLPVP 186

Query: 129 DVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDL 188
           D + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD 
Sbjct: 187 DADPVLSLGSVNSTTSSSNVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDS 246

Query: 189 EEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
           E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 EMN-----------------RLLPVQQMGALVLYCKELEEGR 271

BLAST of Lcy07g001280 vs. ExPASy TrEMBL
Match: A0A6J1FAF4 (protein rough sheath 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111442290 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 7.8e-41
Identity = 107/161 (66.46%), Postives = 116/161 (72.05%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQSPPPLPLANVMSRLPVPD 128
           DGN     VSS EKA+QGPYDHILETF EKYVQPK+YAAAFQSPPP P      RL VP+
Sbjct: 127 DGNIPVVGVSSPEKAVQGPYDHILETFAEKYVQPKIYAAAFQSPPPPP------RLSVPE 186

Query: 129 VNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDLE 188
            + VLSLGSVSSTTSS  VLPLWMNVNST TASSST+STTP PSVSLTLSPSEPA L+ E
Sbjct: 187 ADPVLSLGSVSSTTSSPTVLPLWMNVNSTSTASSSTASTTPSPSVSLTLSPSEPAILESE 246

Query: 189 EGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
                               +  VQQ+GALVQYCK+LEEGR
Sbjct: 247 VN-----------------RILPVQQMGALVQYCKDLEEGR 264

BLAST of Lcy07g001280 vs. ExPASy TrEMBL
Match: A0A6J1IZB3 (protein rough sheath 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482044 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.6e-39
Identity = 105/161 (65.22%), Postives = 113/161 (70.19%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQSPPPLPLANVMSRLPVPD 128
           DGN     VSS EKA+QGPYDHILETF EKYVQPK+YAAAFQSPPP P      RL VP+
Sbjct: 127 DGNIPIVGVSSPEKAVQGPYDHILETFAEKYVQPKIYAAAFQSPPPPP---PPPRLSVPE 186

Query: 129 VNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDLE 188
            + VLSLGSVSSTTSS  VLPLWMN NST TASSST STTP PSVSLTLSPSEPA  + E
Sbjct: 187 ADPVLSLGSVSSTTSSPTVLPLWMNANSTSTASSSTVSTTPSPSVSLTLSPSEPAINETE 246

Query: 189 EGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
                               +  VQQ+GALVQYCK+LEEGR
Sbjct: 247 VN-----------------RILPVQQMGALVQYCKDLEEGR 267

BLAST of Lcy07g001280 vs. ExPASy TrEMBL
Match: A0A5D3CNU9 (Transcription factor AS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00170 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.3e-34
Identity = 96/163 (58.90%), Postives = 105/163 (64.42%), Query Frame = 0

Query: 63  LHPPFPDGNRVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQSPPPLPLANVMSRLPV 122
           L P  P    VSS EKALQGPYDHILETF EKYVQPKLY      P P         +P+
Sbjct: 122 LDPNLPISLAVSSPEKALQGPYDHILETFAEKYVQPKLY------PHP---------IPI 181

Query: 123 PDVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALD 182
           PD + +LSLGSV+STTSSS +LPLWMNVNST TASSST STTP PSVSLTLSPSEP  L+
Sbjct: 182 PDADPLLSLGSVTSTTSSSTLLPLWMNVNSTSTASSSTCSTTPSPSVSLTLSPSEPGCLE 241

Query: 183 LEEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
            E                       V +IGALVQYCKE+EEGR
Sbjct: 242 SE-----------------------VNRIGALVQYCKEVEEGR 246

BLAST of Lcy07g001280 vs. NCBI nr
Match: KAG7036747.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-45
Identity = 117/162 (72.22%), Postives = 121/162 (74.69%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS-PPPLPLANVMSRLPVP 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+AAFQS PPP PLANVM RLPVP
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSAAFQSPPPPPPLANVMPRLPVP 186

Query: 129 DVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDL 188
           D + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD 
Sbjct: 187 DADPVLSLGSVNSTTSSSTVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDS 246

Query: 189 EEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
           E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 EMN-----------------RLLPVQQMGALVLYCKELEEGR 271

BLAST of Lcy07g001280 vs. NCBI nr
Match: XP_022949284.1 (protein rough sheath 2 homolog [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-45
Identity = 117/162 (72.22%), Postives = 121/162 (74.69%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS-PPPLPLANVMSRLPVP 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+AAFQS PPP PLANVM RLPVP
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSAAFQSPPPPPPLANVMPRLPVP 186

Query: 129 DVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDL 188
           D + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD 
Sbjct: 187 DADPVLSLGSVNSTTSSSTVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDS 246

Query: 189 EEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
           E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 EMN-----------------RLLPVQQMGALVLYCKELEEGR 271

BLAST of Lcy07g001280 vs. NCBI nr
Match: XP_023525837.1 (protein rough sheath 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-45
Identity = 117/163 (71.78%), Postives = 121/163 (74.23%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS--PPPLPLANVMSRLPV 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+AAFQS  PPP PLANVM RLPV
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSAAFQSPPPPPPPLANVMPRLPV 186

Query: 129 PDVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALD 188
           PD + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD
Sbjct: 187 PDADPVLSLGSVNSTTSSSTVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLD 246

Query: 189 LEEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
            E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 SEMN-----------------RLLPVQQMGALVLYCKELEEGR 272

BLAST of Lcy07g001280 vs. NCBI nr
Match: XP_023521553.1 (transcription factor AS1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-44
Identity = 113/154 (73.38%), Postives = 117/154 (75.97%), Query Frame = 0

Query: 74  SSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS--PPPLPLANVMSRLPVPDVNLVLSL 133
           SS EKALQGPYDHILETF EKYVQPKLY+AAFQS  PPP PLANVM RLPVPD + VLSL
Sbjct: 1   SSPEKALQGPYDHILETFAEKYVQPKLYSAAFQSPPPPPPPLANVMPRLPVPDADPVLSL 60

Query: 134 GSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDLEEGWQIGA 193
           GSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD E       
Sbjct: 61  GSVNSTTSSSTVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDSEMN----- 120

Query: 194 LVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
                        L  VQQ+GALV YCKELEEGR
Sbjct: 121 ------------RLLPVQQMGALVLYCKELEEGR 137

BLAST of Lcy07g001280 vs. NCBI nr
Match: XP_022997764.1 (protein rough sheath 2 homolog [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-44
Identity = 115/162 (70.99%), Postives = 120/162 (74.07%), Query Frame = 0

Query: 69  DGN----RVSSLEKALQGPYDHILETFTEKYVQPKLYAAAFQS-PPPLPLANVMSRLPVP 128
           DGN     VSS EKALQGPYDHILETF EKYVQPKLY+ AFQS PPP PLAN+M RLPVP
Sbjct: 127 DGNLSISGVSSPEKALQGPYDHILETFAEKYVQPKLYSTAFQSPPPPPPLANLMPRLPVP 186

Query: 129 DVNLVLSLGSVSSTTSSSIVLPLWMNVNSTRTASSSTSSTTPLPSVSLTLSPSEPAALDL 188
           D + VLSLGSV+STTSSS VLPLWMNVNST TASSSTSSTTP PSVSLTLSPSEP  LD 
Sbjct: 187 DADPVLSLGSVNSTTSSSNVLPLWMNVNSTSTASSSTSSTTPSPSVSLTLSPSEPVVLDS 246

Query: 189 EEGWQIGALVQQIGADRKKVALAVVQQIGALVQYCKELEEGR 226
           E                    L  VQQ+GALV YCKELEEGR
Sbjct: 247 EMN-----------------RLLPVQQMGALVLYCKELEEGR 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GCE36.2e-4672.22protein rough sheath 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452685 PE=... [more]
A0A6J1KCH46.8e-4570.99protein rough sheath 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492624 PE=4 ... [more]
A0A6J1FAF47.8e-4166.46protein rough sheath 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111442290 PE=... [more]
A0A6J1IZB35.6e-3965.22protein rough sheath 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482044 PE=4 ... [more]
A0A5D3CNU99.3e-3458.90Transcription factor AS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
Match NameE-valueIdentityDescription
KAG7036747.11.3e-4572.22Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949284.11.3e-4572.22protein rough sheath 2 homolog [Cucurbita moschata][more]
XP_023525837.11.7e-4571.78protein rough sheath 2 homolog [Cucurbita pepo subsp. pepo][more]
XP_023521553.11.1e-4473.38transcription factor AS1-like, partial [Cucurbita pepo subsp. pepo][more]
XP_022997764.11.4e-4470.99protein rough sheath 2 homolog [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR47214:SF1PROTEIN ROUGH SHEATH 2 HOMOLOGcoord: 68..225
NoneNo IPR availablePANTHERPTHR47214PROTEIN ROUGH SHEATH 2 HOMOLOGcoord: 68..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g001280.1Lcy07g001280.1mRNA