Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA
mRNA sequence
ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA
Coding sequence (CDS)
ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA
Protein sequence
MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP
Homology
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match:
A0A6J1DLQ2 (uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022107 PE=4 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 4.4e-33
Identity = 72/166 (43.37%), Postives = 109/166 (65.66%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y+ + SS S S +A ++ +
Sbjct: 1 MTTNIAESVNALFRHARKLPVTVLLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIXE 60
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
A + AR H+V I + FEV DG+L G +L ++TCTCREF+Y+++PCSHAI A R+I
Sbjct: 61 ASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAANSRSI 120
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +T+ Y V+S + A+PI P+ S WK SP FV+++V PP
Sbjct: 121 NPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPP 166
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match:
A0A6J1CVL4 (uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015181 PE=4 SV=1)
HSP 1 Score: 150.6 bits (379), Expect = 5.8e-33
Identity = 71/166 (42.77%), Postives = 107/166 (64.46%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y + +S + S +A + +
Sbjct: 320 MTTNIAESVNTLFRHARKLPVTALLDHIRGKLQNWFYDRRTLAASRSTTLSDYAENMYAE 379
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
RRH+V I ++ F+V D +L G +L+A TC CREF+Y+++PCSHAI A T RNI
Sbjct: 380 YSNSVRRHVVDNIDQFHFQVQDDNLDGIVDLNAMTCNCREFDYFKIPCSHAIAAATMRNI 439
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +++ Y +S I AYA+PI P+ HVS W SP+FV++ V PP
Sbjct: 440 NPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVNIPVEPP 485
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match:
A0A6J1DQY6 (uncharacterized protein LOC111023509 OS=Momordica charantia OX=3673 GN=LOC111023509 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 71/166 (42.77%), Postives = 111/166 (66.87%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y + +S + S +A + +
Sbjct: 215 MTTNIAESVNALFRHARKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDYAENMYAE 274
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
++ARRH V I ++ F+V DG+L G +L+A TC+C+EF Y+++PCSHAI A T RNI
Sbjct: 275 YSDRARRH-VDNIDQFHFQVQDGNLDGIVDLNAMTCSCQEFYYFKIPCSHAIAAATMRNI 334
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +++ Y +S I AYA+PI P+R++S W SP+FV++ V PP
Sbjct: 335 NPYSLCDEAYTANSWILAYAEPIFPIRYISTWSSSPEFVNIPVEPP 379
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match:
A0A6J1DNT3 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022108 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSS--------------- 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y+ + SS
Sbjct: 196 MTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 255
Query: 61 ---NPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFE 120
N + S +A ++ +A + ARRH+V I ++ FEV DG+L G +L ++TCTCREF+
Sbjct: 256 ASDNARRXSDYAEEMIAEASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFD 315
Query: 121 YYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVE 167
Y+++PCSHAI A R+I+ +T+ Y V+S + AYA+PI P+ S WK SP FV+++
Sbjct: 316 YFKVPCSHAIAAACSRSINPYTLCDEAYTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNID 375
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match:
A0A6J1DQV1 (uncharacterized protein LOC111022299 OS=Momordica charantia OX=3673 GN=LOC111022299 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 67/165 (40.61%), Postives = 107/165 (64.85%), Query Frame = 0
Query: 2 TTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEKA 61
TTN+AE ++L AR LP+TT + H LQ YY+ + S+ S + + I++ A
Sbjct: 69 TTNIAESMNAVLVHARYLPVTTLLEHCGALLQRWYYEQRTYASTRASILTDYVEGIVKSA 128
Query: 62 EEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNID 121
E+AR+H +RPI YE+EV DG+ R NL++++CTC++F+YY++PCSHA+VA +RN+
Sbjct: 129 VEQARQHTIRPIDNYEYEVHDGNSKVRVNLNSKSCTCKQFDYYQIPCSHAVVATMHRNVS 188
Query: 122 YHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+T+ S Y +++L++ YA+PI PL +W FV+ + PP
Sbjct: 189 IYTLCSPKYKLETLLNTYAEPIYPLGDEEDWPLPDDFVEYTIEPP 233
BLAST of Lcy07g000560 vs. NCBI nr
Match:
XP_022154963.1 (uncharacterized protein LOC111022107 [Momordica charantia])
HSP 1 Score: 151.0 bits (380), Expect = 9.1e-33
Identity = 72/166 (43.37%), Postives = 109/166 (65.66%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y+ + SS S S +A ++ +
Sbjct: 1 MTTNIAESVNALFRHARKLPVTVLLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIXE 60
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
A + AR H+V I + FEV DG+L G +L ++TCTCREF+Y+++PCSHAI A R+I
Sbjct: 61 ASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAANSRSI 120
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +T+ Y V+S + A+PI P+ S WK SP FV+++V PP
Sbjct: 121 NPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPP 166
BLAST of Lcy07g000560 vs. NCBI nr
Match:
XP_022145820.1 (uncharacterized protein LOC111015181 [Momordica charantia])
HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 71/166 (42.77%), Postives = 107/166 (64.46%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y + +S + S +A + +
Sbjct: 320 MTTNIAESVNTLFRHARKLPVTALLDHIRGKLQNWFYDRRTLAASRSTTLSDYAENMYAE 379
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
RRH+V I ++ F+V D +L G +L+A TC CREF+Y+++PCSHAI A T RNI
Sbjct: 380 YSNSVRRHVVDNIDQFHFQVQDDNLDGIVDLNAMTCNCREFDYFKIPCSHAIAAATMRNI 439
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +++ Y +S I AYA+PI P+ HVS W SP+FV++ V PP
Sbjct: 440 NPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVNIPVEPP 485
BLAST of Lcy07g000560 vs. NCBI nr
Match:
XP_022156660.1 (uncharacterized protein LOC111023509 [Momordica charantia])
HSP 1 Score: 149.4 bits (376), Expect = 2.7e-32
Identity = 71/166 (42.77%), Postives = 111/166 (66.87%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y + +S + S +A + +
Sbjct: 215 MTTNIAESVNALFRHARKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDYAENMYAE 274
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
++ARRH V I ++ F+V DG+L G +L+A TC+C+EF Y+++PCSHAI A T RNI
Sbjct: 275 YSDRARRH-VDNIDQFHFQVQDGNLDGIVDLNAMTCSCQEFYYFKIPCSHAIAAATMRNI 334
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
+ +++ Y +S I AYA+PI P+R++S W SP+FV++ V PP
Sbjct: 335 NPYSLCDEAYTANSWILAYAEPIFPIRYISTWSSSPEFVNIPVEPP 379
BLAST of Lcy07g000560 vs. NCBI nr
Match:
XP_038891632.1 (uncharacterized protein LOC120081024 [Benincasa hispida])
HSP 1 Score: 149.4 bits (376), Expect = 2.7e-32
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
M +N AEC S+ K+ R +PI + H+RG LQ+ +Y+ +N +S + S + L
Sbjct: 1 MISNSAECFNSLTKEYRLMPIVCLIEHVRGMLQSWFYEQRNYWASRTTLHSNYCETRLAS 60
Query: 61 AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
+K RR+ V I Y V + L G NLH + CTC+EFE +PCSHAIVA RNI
Sbjct: 61 ETDKGRRYRVESIDCYRVHVRNNRLDGIINLHTKECTCKEFESLGIPCSHAIVAARERNI 120
Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
H + SR Y VDSL+ AYA+PI PL H+SEWKR +V+ +LPP
Sbjct: 121 PIHGLCSRFYTVDSLMTAYAEPINPLGHISEWKRPSGYVEKIILPP 166
BLAST of Lcy07g000560 vs. NCBI nr
Match:
XP_022154964.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])
HSP 1 Score: 149.1 bits (375), Expect = 3.5e-32
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 0
Query: 1 MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSS--------------- 60
MTTN+AE ++ + AR+LP+T ++HIRG LQ +Y+ + SS
Sbjct: 196 MTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 255
Query: 61 ---NPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFE 120
N + S +A ++ +A + ARRH+V I ++ FEV DG+L G +L ++TCTCREF+
Sbjct: 256 ASDNARRXSDYAEEMIAEASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFD 315
Query: 121 YYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVE 167
Y+++PCSHAI A R+I+ +T+ Y V+S + AYA+PI P+ S WK SP FV+++
Sbjct: 316 YFKVPCSHAIAAACSRSINPYTLCDEAYTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNID 375
BLAST of Lcy07g000560 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 29/126 (23.02%), Postives = 55/126 (43.65%), Query Frame = 0
Query: 32 LQAKYYKCKNKHSSNPSQWSKFATAILEKAEE---KARRHMVRPIARYEFEVDDGHLGGR 91
L++ + K + S+ ++ + ++K EE + +++ + R F+V +
Sbjct: 574 LRSSFDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEE 633
Query: 92 --ANLHARTCTCREFEYYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPL 151
L+ TCTCR+F+ Y+ PC HA+ I+ Y V+ YA P+
Sbjct: 634 WIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPV 693
Query: 152 RHVSEW 153
V+ W
Sbjct: 694 PDVAAW 699
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DLQ2 | 4.4e-33 | 43.37 | uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1CVL4 | 5.8e-33 | 42.77 | uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
A0A6J1DQY6 | 1.3e-32 | 42.77 | uncharacterized protein LOC111023509 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DNT3 | 1.7e-32 | 40.76 | protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1DQV1 | 1.7e-32 | 40.61 | uncharacterized protein LOC111022299 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
Match Name | E-value | Identity | Description | |
AT1G64260.1 | 1.1e-04 | 23.02 | MuDR family transposase | [more] |