Lcy07g000560 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g000560
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
LocationChr07: 1546411 .. 1546911 (+)
RNA-Seq ExpressionLcy07g000560
SyntenyLcy07g000560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA

mRNA sequence

ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA

Coding sequence (CDS)

ATGACCACCAATCTTGCGGAGTGCACTAAATCAATGTTGAAGGATGCACGAGAGCTCCCAATCACTACATTTATGAATCATATTAGAGGGTGGCTCCAAGCAAAATACTACAAATGCAAGAATAAGCACTCCAGTAACCCAAGCCAGTGGTCAAAGTTTGCAACGGCCATTTTGGAAAAAGCAGAGGAGAAGGCAAGAAGACACATGGTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGCCAATCTTCACGCTAGAACATGCACCTGTCGTGAATTTGAATATTACGAACTTCCATGCTCCCATGCGATTGTTGCATGCACTTATCGCAACATTGACTATCATACCATTTCTTCCAGAGTCTACCATGTGGACTCCTTGATAGATGCATATGCACAACCCATACAACCCCTTAGGCATGTGTCGGAGTGGAAGAGGTCACCTCAATTCGTCGACGTGGAAGTCTTGCCCCCTTGA

Protein sequence

MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP
Homology
BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match: A0A6J1DLQ2 (uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022107 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.4e-33
Identity = 72/166 (43.37%), Postives = 109/166 (65.66%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y+ +   SS  S  S +A  ++ +
Sbjct: 1   MTTNIAESVNALFRHARKLPVTVLLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIXE 60

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
           A + AR H+V  I  + FEV DG+L G  +L ++TCTCREF+Y+++PCSHAI A   R+I
Sbjct: 61  ASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAANSRSI 120

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +T+    Y V+S +   A+PI P+   S WK SP FV+++V PP
Sbjct: 121 NPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPP 166

BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match: A0A6J1CVL4 (uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015181 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.8e-33
Identity = 71/166 (42.77%), Postives = 107/166 (64.46%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y  +   +S  +  S +A  +  +
Sbjct: 320 MTTNIAESVNTLFRHARKLPVTALLDHIRGKLQNWFYDRRTLAASRSTTLSDYAENMYAE 379

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
                RRH+V  I ++ F+V D +L G  +L+A TC CREF+Y+++PCSHAI A T RNI
Sbjct: 380 YSNSVRRHVVDNIDQFHFQVQDDNLDGIVDLNAMTCNCREFDYFKIPCSHAIAAATMRNI 439

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +++    Y  +S I AYA+PI P+ HVS W  SP+FV++ V PP
Sbjct: 440 NPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVNIPVEPP 485

BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match: A0A6J1DQY6 (uncharacterized protein LOC111023509 OS=Momordica charantia OX=3673 GN=LOC111023509 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 71/166 (42.77%), Postives = 111/166 (66.87%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y  +   +S  +  S +A  +  +
Sbjct: 215 MTTNIAESVNALFRHARKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDYAENMYAE 274

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
             ++ARRH V  I ++ F+V DG+L G  +L+A TC+C+EF Y+++PCSHAI A T RNI
Sbjct: 275 YSDRARRH-VDNIDQFHFQVQDGNLDGIVDLNAMTCSCQEFYYFKIPCSHAIAAATMRNI 334

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +++    Y  +S I AYA+PI P+R++S W  SP+FV++ V PP
Sbjct: 335 NPYSLCDEAYTANSWILAYAEPIFPIRYISTWSSSPEFVNIPVEPP 379

BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match: A0A6J1DNT3 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022108 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSS--------------- 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y+ +   SS               
Sbjct: 196 MTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 255

Query: 61  ---NPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFE 120
              N  + S +A  ++ +A + ARRH+V  I ++ FEV DG+L G  +L ++TCTCREF+
Sbjct: 256 ASDNARRXSDYAEEMIAEASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFD 315

Query: 121 YYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVE 167
           Y+++PCSHAI A   R+I+ +T+    Y V+S + AYA+PI P+   S WK SP FV+++
Sbjct: 316 YFKVPCSHAIAAACSRSINPYTLCDEAYTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNID 375

BLAST of Lcy07g000560 vs. ExPASy TrEMBL
Match: A0A6J1DQV1 (uncharacterized protein LOC111022299 OS=Momordica charantia OX=3673 GN=LOC111022299 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 67/165 (40.61%), Postives = 107/165 (64.85%), Query Frame = 0

Query: 2   TTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEKA 61
           TTN+AE   ++L  AR LP+TT + H    LQ  YY+ +   S+  S  + +   I++ A
Sbjct: 69  TTNIAESMNAVLVHARYLPVTTLLEHCGALLQRWYYEQRTYASTRASILTDYVEGIVKSA 128

Query: 62  EEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNID 121
            E+AR+H +RPI  YE+EV DG+   R NL++++CTC++F+YY++PCSHA+VA  +RN+ 
Sbjct: 129 VEQARQHTIRPIDNYEYEVHDGNSKVRVNLNSKSCTCKQFDYYQIPCSHAVVATMHRNVS 188

Query: 122 YHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
            +T+ S  Y +++L++ YA+PI PL    +W     FV+  + PP
Sbjct: 189 IYTLCSPKYKLETLLNTYAEPIYPLGDEEDWPLPDDFVEYTIEPP 233

BLAST of Lcy07g000560 vs. NCBI nr
Match: XP_022154963.1 (uncharacterized protein LOC111022107 [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 9.1e-33
Identity = 72/166 (43.37%), Postives = 109/166 (65.66%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y+ +   SS  S  S +A  ++ +
Sbjct: 1   MTTNIAESVNALFRHARKLPVTVLLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIXE 60

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
           A + AR H+V  I  + FEV DG+L G  +L ++TCTCREF+Y+++PCSHAI A   R+I
Sbjct: 61  ASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAANSRSI 120

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +T+    Y V+S +   A+PI P+   S WK SP FV+++V PP
Sbjct: 121 NPYTLCDEAYTVNSWMLGCAEPIFPVGSSSTWKSSPGFVNIDVQPP 166

BLAST of Lcy07g000560 vs. NCBI nr
Match: XP_022145820.1 (uncharacterized protein LOC111015181 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 71/166 (42.77%), Postives = 107/166 (64.46%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y  +   +S  +  S +A  +  +
Sbjct: 320 MTTNIAESVNTLFRHARKLPVTALLDHIRGKLQNWFYDRRTLAASRSTTLSDYAENMYAE 379

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
                RRH+V  I ++ F+V D +L G  +L+A TC CREF+Y+++PCSHAI A T RNI
Sbjct: 380 YSNSVRRHVVDNIDQFHFQVQDDNLDGIVDLNAMTCNCREFDYFKIPCSHAIAAATMRNI 439

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +++    Y  +S I AYA+PI P+ HVS W  SP+FV++ V PP
Sbjct: 440 NPYSLCDEAYTTNSWILAYAEPIFPVGHVSTWNSSPEFVNIPVEPP 485

BLAST of Lcy07g000560 vs. NCBI nr
Match: XP_022156660.1 (uncharacterized protein LOC111023509 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-32
Identity = 71/166 (42.77%), Postives = 111/166 (66.87%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y  +   +S  +  S +A  +  +
Sbjct: 215 MTTNIAESVNALFRHARKLPVTALLDHIRGKLQTWFYDRRTLAASRSTTLSDYAENMYAE 274

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
             ++ARRH V  I ++ F+V DG+L G  +L+A TC+C+EF Y+++PCSHAI A T RNI
Sbjct: 275 YSDRARRH-VDNIDQFHFQVQDGNLDGIVDLNAMTCSCQEFYYFKIPCSHAIAAATMRNI 334

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
           + +++    Y  +S I AYA+PI P+R++S W  SP+FV++ V PP
Sbjct: 335 NPYSLCDEAYTANSWILAYAEPIFPIRYISTWSSSPEFVNIPVEPP 379

BLAST of Lcy07g000560 vs. NCBI nr
Match: XP_038891632.1 (uncharacterized protein LOC120081024 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-32
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSSNPSQWSKFATAILEK 60
           M +N AEC  S+ K+ R +PI   + H+RG LQ+ +Y+ +N  +S  +  S +    L  
Sbjct: 1   MISNSAECFNSLTKEYRLMPIVCLIEHVRGMLQSWFYEQRNYWASRTTLHSNYCETRLAS 60

Query: 61  AEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFEYYELPCSHAIVACTYRNI 120
             +K RR+ V  I  Y   V +  L G  NLH + CTC+EFE   +PCSHAIVA   RNI
Sbjct: 61  ETDKGRRYRVESIDCYRVHVRNNRLDGIINLHTKECTCKEFESLGIPCSHAIVAARERNI 120

Query: 121 DYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVEVLPP 167
             H + SR Y VDSL+ AYA+PI PL H+SEWKR   +V+  +LPP
Sbjct: 121 PIHGLCSRFYTVDSLMTAYAEPINPLGHISEWKRPSGYVEKIILPP 166

BLAST of Lcy07g000560 vs. NCBI nr
Match: XP_022154964.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-32
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 0

Query: 1   MTTNLAECTKSMLKDARELPITTFMNHIRGWLQAKYYKCKNKHSS--------------- 60
           MTTN+AE   ++ + AR+LP+T  ++HIRG LQ  +Y+ +   SS               
Sbjct: 196 MTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 255

Query: 61  ---NPSQWSKFATAILEKAEEKARRHMVRPIARYEFEVDDGHLGGRANLHARTCTCREFE 120
              N  + S +A  ++ +A + ARRH+V  I ++ FEV DG+L G  +L ++TCTCREF+
Sbjct: 256 ASDNARRXSDYAEEMIAEASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFD 315

Query: 121 YYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPLRHVSEWKRSPQFVDVE 167
           Y+++PCSHAI A   R+I+ +T+    Y V+S + AYA+PI P+   S WK SP FV+++
Sbjct: 316 YFKVPCSHAIAAACSRSINPYTLCDEAYTVNSWMLAYAEPIFPVGSSSTWKSSPGFVNID 375

BLAST of Lcy07g000560 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 29/126 (23.02%), Postives = 55/126 (43.65%), Query Frame = 0

Query: 32  LQAKYYKCKNKHSSNPSQWSKFATAILEKAEE---KARRHMVRPIARYEFEVDDGHLGGR 91
           L++ + K  +   S+ ++   +    ++K EE    +  +++  + R  F+V +      
Sbjct: 574 LRSSFDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEE 633

Query: 92  --ANLHARTCTCREFEYYELPCSHAIVACTYRNIDYHTISSRVYHVDSLIDAYAQPIQPL 151
               L+  TCTCR+F+ Y+ PC HA+       I+        Y V+     YA    P+
Sbjct: 634 WIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPV 693

Query: 152 RHVSEW 153
             V+ W
Sbjct: 694 PDVAAW 699

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DLQ24.4e-3343.37uncharacterized protein LOC111022107 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CVL45.8e-3342.77uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1DQY61.3e-3242.77uncharacterized protein LOC111023509 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DNT31.7e-3240.76protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DQV11.7e-3240.61uncharacterized protein LOC111022299 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
XP_022154963.19.1e-3343.37uncharacterized protein LOC111022107 [Momordica charantia][more]
XP_022145820.11.2e-3242.77uncharacterized protein LOC111015181 [Momordica charantia][more]
XP_022156660.12.7e-3242.77uncharacterized protein LOC111023509 [Momordica charantia][more]
XP_038891632.12.7e-3244.58uncharacterized protein LOC120081024 [Benincasa hispida][more]
XP_022154964.13.5e-3240.76protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G64260.11.1e-0423.02MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 94..121
e-value: 2.1E-9
score: 47.3
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 94..118
e-value: 4.8E-7
score: 29.3
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 76..119
score: 9.532228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g000560.1Lcy07g000560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding