Lcy07g000160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g000160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr07: 448196 .. 448706 (+)
RNA-Seq Expression	Lcy07g000160
Synteny	Lcy07g000160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAAATGATTATTAAACGGGGCCTAAGGATTACAGAAGGAGATCCTGGAGTTTCGACAAAGCTTTGCACATTTTTTGGTCCATTTCCATGACTTGTTTGTTTTTCTTGCAGGAAGATGGCGATGGCGTTGGGCAACTCCGTTGGCACGGTAGAAACTAACGAGAAAGGAAAATGTTGGGGGAGAAATGCTAAGGGTGAAAAGCAACGGTTGAGGAGGGGTATGAAAATAAGGTTGGGAGCATCGACTGAGCAAGTGTGGGTGAGAATGTCATATGAGAAGCTCCTACACTTGTGTTATGGATGCCATATGATTGGGTATGTGGCGAAAGATCATCAATTTGGTGAATGGTTAAGAGCAACCCACAGCCAAAATCTGAAACACAGGGACGAAAGGAGAAGAATGTACTTAATCACTAATCATTTTGATCTTTGGCTTATACATTCTTAATAGTTACTTTGAAGTGCTCTTAGGTTAAATACTTGAGCTAAAAACATTTTACCTGTGCC

mRNA sequence

AAAACAAAATGATTATTAAACGGGGCCTAAGGATTACAGAAGGAGATCCTGGAGTTTCGACAAAGCTTTGCACATTTTTTGGTCCATTTCCATGACTTGTTTGTTTTTCTTGCAGGAAGATGGCGATGGCGTTGGGCAACTCCGTTGGCACGGTAGAAACTAACGAGAAAGGAAAATGTTGGGGGAGAAATGCTAAGGGTGAAAAGCAACGGTTGAGGAGGGGTATGAAAATAAGGTTGGGAGCATCGACTGAGCAAGTGTGGGTGAGAATGTCATATGAGAAGCTCCTACACTTGTGTTATGGATGCCATATGATTGGGTATGTGGCGAAAGATCATCAATTTGGTGAATGGTTAAGAGCAACCCACAGCCAAAATCTGAAACACAGGGACGAAAGGAGAAGAATGTACTTAATCACTAATCATTTTGATCTTTGGCTTATACATTCTTAATAGTTACTTTGAAGTGCTCTTAGGTTAAATACTTGAGCTAAAAACATTTTACCTGTGCC

Coding sequence (CDS)

ATGGCGATGGCGTTGGGCAACTCCGTTGGCACGGTAGAAACTAACGAGAAAGGAAAATGTTGGGGGAGAAATGCTAAGGGTGAAAAGCAACGGTTGAGGAGGGGTATGAAAATAAGGTTGGGAGCATCGACTGAGCAAGTGTGGGTGAGAATGTCATATGAGAAGCTCCTACACTTGTGTTATGGATGCCATATGATTGGGTATGTGGCGAAAGATCATCAATTTGGTGAATGGTTAAGAGCAACCCACAGCCAAAATCTGAAACACAGGGACGAAAGGAGAAGAATGTACTTAATCACTAATCATTTTGATCTTTGGCTTATACATTCTTAA

Protein sequence

MAMALGNSVGTVETNEKGKCWGRNAKGEKQRLRRGMKIRLGASTEQVWVRMSYEKLLHLCYGCHMIGYVAKDHQFGEWLRATHSQNLKHRDERRRMYLITNHFDLWLIHS

Homology

[Close]

BLAST of Lcy07g000160 vs. ExPASy TrEMBL
Match: A0A6P6FRB5 (uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC112489822 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 1   MAMALGNSVG---TVETNEKGKCWGRNAKGE-------KQRLRRGMKIRLGASTEQVWVR 60
           + MA+G+ +G   +V+++E+G CWG+  +         ++ LRRGM IR   + +  WV 
Sbjct: 87  VGMAIGSQLGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDGA-DSFWVE 146

Query: 61  MSYEKLLHLCYGCHMIGYVAKD---------HQFGEWLRA-THSQNLK 89
             YE+LL  C+ C M+G+  KD         +Q+G WLRA TH  N K
Sbjct: 147 FQYERLLEFCFTCGMLGHSQKDCASGVAGKANQYGAWLRASTHQINSK 193

[Close]

BLAST of Lcy07g000160 vs. NCBI nr
Match: XP_024924622.1 (uncharacterized protein LOC112489822 [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 1   MAMALGNSVG---TVETNEKGKCWGRNAKGE-------KQRLRRGMKIRLGASTEQVWVR 60
           + MA+G+ +G   +V+++E+G CWG+  +         ++ LRRGM IR   + +  WV 
Sbjct: 87  VGMAIGSQLGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDGA-DSFWVE 146

Query: 61  MSYEKLLHLCYGCHMIGYVAKD---------HQFGEWLRA-THSQNLK 89
             YE+LL  C+ C M+G+  KD         +Q+G WLRA TH  N K
Sbjct: 147 FQYERLLEFCFTCGMLGHSQKDCASGVAGKANQYGAWLRASTHQINSK 193

The following BLAST results are available for this feature:

BLAST of Lcy07g000160 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g000160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6FRB5	3.6e-07	36.11	uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC11248982...	[more]

BLAST of Lcy07g000160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024924622.1	7.5e-07	36.11	uncharacterized protein LOC112489822 [Ziziphus jujuba]	[more]

BLAST of Lcy07g000160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 30..71 e-value: 2.3E-8 score: 33.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g000160.1	Lcy07g000160.1	mRNA