Lcy06g022690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g022690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Dynein light chain
Location	Chr06: 47459411 .. 47460381 (+)
RNA-Seq Expression	Lcy06g022690
Synteny	Lcy06g022690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGTGGGGATCCAGGGCCATGTCCTTGGGTTGGCTTATAAAGCTCTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGGTTTATTTTCTTAAACACTCAGAATCTTCTTTATGTAGTGGTTTAAATTTCAATTTTATTAAATTTAAAATATCCCCTTTTTCCCTTTTATTTCAAAAAAGGAAGACAAGTCCTTTCATTGCAATAATAGATTGAAAAGATTCATTTTTGTAACCTGTAAAAGTTGTGGAGACCCTTTTATGATATAAAGAAGATATGCTTCATCATTCACAGTAACCACATCAACAAACAAAGTTACCTTTTCCTTTTAAAATATTCGAGTGTGTGTCATTTTCAGATACTATAAATTTCTACACACAAATATAGCTGATCTATGTACACGTCATCCACCATCTGATCTGATATGATGAGACTAAATCTGGAATATACTTTGTGTGGATGATGTTTGAATCAACTTGTCTGAAGAGTAAAGGGACATCATTTTGAATGAAATGACCCAGAAGTTCCCATGTTCATCATTTCTATCTTTTTGCTGGTTTGTGAATGAACAATCTCAGTATAATAATTAATAATAAGGAAAAAAAGCTGCTAGATATCAAATTTTTTAGTATTGAATGGACCAACCCGTGACATATTAATGAAAGATTACAAAATAATGTCTGTAAAAACTGCATACTGATATGACTTTGAGCTTTGATAATTAGAGGTTTGATGAAGCTTATGGCCCGGCTTGGCATTGTGTGGTGGGCAGAGCGTTTGGAGGTTGCATTACGCATTTATCTGGTAGCTTCATCTTCTTCCATGTGGATACCATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCGTTGAAGAGACCGTCGGAGTTCGCCAGAAAAGTTAA

mRNA sequence

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGTGGGGATCCAGGGCCATGTCCTTGGGTTGGCTTATAAAGCTCTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGAGGTTTGATGAAGCTTATGGCCCGGCTTGGCATTGTGTGGTGGGCAGAGCGTTTGGAGGTTGCATTACGCATTTATCTGGTAGCTTCATCTTCTTCCATGTGGATACCATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCGTTGAAGAGACCGTCGGAGTTCGCCAGAAAAGTTAA

Coding sequence (CDS)

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCAGTGGGGATCCAGGGCCATGTCCTTGGGTTGGCTTATAAAGCTCTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCACGTTTCATCAAACAGAGGTTTGATGAAGCTTATGGCCCGGCTTGGCATTGTGTGGTGGGCAGAGCGTTTGGAGGTTGCATTACGCATTTATCTGGTAGCTTCATCTTCTTCCATGTGGATACCATGGAGTTTCTCATCTTTAAGGACGGAAGAGACTGCTCCAAAAGCGTTGAAGAGACCGTCGGAGTTCGCCAGAAAAGTTAA

Protein sequence

MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVVGRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQKS

Homology

[Close]

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-16
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DM   +Q   + +A  A+D+H++   + IA  IK+ FD  Y P WHC+V
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFKDG 92
          GR FG  +TH + +FI+F++D   FL+FK G
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

[Close]

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DMP  +Q   +  A +AL++  +   + IA +IK+ FD+ Y P WHC+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFKDG 92
          GR FG  +TH +  FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-15
Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M++ KAV++  DM   +Q   +  A +AL+++ +   + IA +IK+ FD+ Y P WHC+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFKDG 92
          GR FG  +TH +  FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-15
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M E KAV++  DM   +Q   +  A  ALD++E+   + +A +IK+ FD  Y P WHC+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFKDG 92
          G+ FG  +TH +  FI+F++    FL+FK G
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

[Close]

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-15
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          M + KAV++  DM   +Q   +  A +AL+++ +   + IA FIK+ FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFKDG 92
          GR FG  +TH +  FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP GIQ HVL LAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+AFGGCITHL GSFIFFHVDTMEFL+FKDGRDCSKSVEETVGV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107

[Close]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.9e-50
Identity = 97/108 (89.81%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKA VRETDMP GIQ HVL LAYKALD HEVSDCQSIARFIKQRFDEAYGPAWHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQKS 109
           G+AFGGCITHL GSFIFFHVD MEFLIFKDGRD SKS+EET+GVRQKS
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQKS 108

[Close]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP GIQ HVL LAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+AFGGCITHL GS+IFFHVDTMEFL+FKDGRDC KSVEETVGV +K
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 107

[Close]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL
Match: A0A5J4ZMN8 (Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAV+RETDMP  +Q HV+ LAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+ FG CITHL GSFIFF VD MEFL+FKDG+D ++S EE +GV QK
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL
Match: A0A2P5EZ32 (Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 79/108 (73.15%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP  +Q HV+ LAYKALD HEVSDCQSIA +IKQ+FDE YGPAW+CVV
Sbjct: 1   MLEGKAVVRETDMPEAMQSHVMELAYKALDLHEVSDCQSIANYIKQKFDEEYGPAWNCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQKS 109
           G+ FG CITHL GSFIFFHV+ MEFLIFKDG+D +++++E +GV QK+
Sbjct: 61  GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDFNETMDEAIGVLQKA 108

[Close]

BLAST of Lcy06g022690 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP GIQ HVL LAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+AFGGCITHL GSFIFFHVDTMEFL+FKDGRDCSKSVEETVGV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107

[Close]

BLAST of Lcy06g022690 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 97/108 (89.81%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKA VRETDMP GIQ HVL LAYKALD HEVSDCQSIARFIKQRFDEAYGPAWHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQKS 109
           G+AFGGCITHL GSFIFFHVD MEFLIFKDGRD SKS+EET+GVRQKS
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQKS 108

[Close]

BLAST of Lcy06g022690 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAVVRETDMP GIQ HVL LAYKALDQHEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+AFGGCITHL GS+IFFHVDTMEFL+FKDGRDC KSVEETVGV +K
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 107

[Close]

BLAST of Lcy06g022690 vs. NCBI nr
Match: XP_023540066.1 (dynein light chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 7.7e-41
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGK VVRETDM   IQGH L LAYKALDQHEVSD QSIARFIKQR DEAYGPAW CVV
Sbjct: 1   MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVG 104
           G+AFGGCITH+ G+FIFFHVDTMEFLIFKD  DC KS++ T+G
Sbjct: 61  GKAFGGCITHVCGTFIFFHVDTMEFLIFKDATDCFKSLQHTLG 103

[Close]

BLAST of Lcy06g022690 vs. NCBI nr
Match: KAA8518956.1 (hypothetical protein F0562_016270 [Nyssa sinensis])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
           MLEGKAV+RETDMP  +Q HV+ LAY+ALD HE SDCQSIA +IKQ+FDEAYGPAWHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GRAFGGCITHLSGSFIFFHVDTMEFLIFKDGRDCSKSVEETVGVRQK 108
           G+ FG CITHL GSFIFF VD MEFL+FKDG+D ++S EE +GV QK
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of Lcy06g022690 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-23
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKA+V ++DMPV +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFK 90
          G  FG   TH  G+FI+F ++T++FLIFK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Lcy06g022690 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-22
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKA V ETDMPV +Q   + +A ++LD  +V D  SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFK 90
          G  FG   TH  G+FI+FH+ T+ FLIFK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Lcy06g022690 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 94.4 bits (233), Expect = 6.2e-20
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60
          MLEGKAV+ +TDM   ++   L LA KALD  +V++   IARFIK+ FD +YG  W C+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GRAFGGCITHLSGSFIFFHVDTMEFLIFK 90
          G  FG  +TH SG FI F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of Lcy06g022690 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-15
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMPVGIQGHVLGLAYKALDQHEVSDCQSIARFIKQRFDEAYGPAWHCVVGRAFGGCITHL 71
           DMP  +Q H    A   LD  E    + +A  +K+ FD+ YGPAWHC+VG +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  SGSFIFFHVDTMEFLIFK 90
           +G FI+F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of Lcy06g022690 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.8e-15
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 8   VRETDMPVGIQGHVLGLAYKALDQHE-VSDCQSIARFIKQRFDEAYGPAWHCVVGRAFGG 67
           VR +DMP+  Q     L+ + L+     +D + +A  +K+ FD AYGPAWHC+VG +FG 
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 68  CITHLSGSFIFFHVDTMEFLIFK 90
            +TH +G F++F +D +  L+FK
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFK 120

The following BLAST results are available for this feature:

BLAST of Lcy06g022690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	6.9e-16	42.86	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
O02414	2.6e-15	40.66	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	7.6e-15	38.46	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q94748	7.6e-15	40.66	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O96860	9.9e-15	39.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of Lcy06g022690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B5U2	2.6e-50	90.65	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A6J1CWC6	9.9e-50	89.81	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
A0A0A0LA26	2.9e-49	88.79	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A5J4ZMN8	1.1e-40	73.83	Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1	[more]
A0A2P5EZ32	1.4e-40	73.15	Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1	[more]

BLAST of Lcy06g022690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442502.1	5.4e-50	90.65	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
XP_022145583.1	2.0e-49	89.81	dynein light chain-like [Momordica charantia]	[more]
KGN58830.1	5.9e-49	88.79	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
XP_023540066.1	7.7e-41	80.58	dynein light chain-like [Cucurbita pepo subsp. pepo]	[more]
KAA8518956.1	2.3e-40	73.83	hypothetical protein F0562_016270 [Nyssa sinensis]	[more]

BLAST of Lcy06g022690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	5.9e-23	53.93	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	5.0e-22	55.06	Dynein light chain type 1 family protein	[more]
AT4G27360.1	6.2e-20	50.56	Dynein light chain type 1 family protein	[more]
AT5G20110.1	6.0e-15	43.59	Dynein light chain type 1 family protein	[more]
AT1G23220.1	7.8e-15	40.96	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 4.7E-37 score: 139.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 1.3E-28 score: 99.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..107
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 6.4E-29 score: 101.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g022690.1	Lcy06g022690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010274	hydrotropism
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding