Lcy06g022100 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g022100
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr06: 47008002 .. 47008775 (+)
RNA-Seq ExpressionLcy06g022100
SyntenyLcy06g022100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGACTCTCACTATTTCTTTCTCTCTCTCTCTTTCTCTCTGCTTTCCCCTTCTTTCGCCATTCCCAAATCCGCTCTCTCCATTCTCAAATCTCCGCCGGAGAATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCAGCCGATTACCTCTCCGAACCGCCTCCGCCGGCCGGACCGGTCCAGACGGTTGAATCTGCCGCCCCGCACTCGACTCTCCTGTCTCGGCCGCCGCAGCAGAGCCGCAACGCTGATCCGGCGGCGGCAAAGCCTCCTGCTCCGGCAGGTTCGAATGCAGGTCCGAATCCGGCCAGCTAATGGACCAACCGCCGCCGGATTCGACGGCGACGTTTTGGTCGATCGGAATTTGAAGATGAAGATGTAGGTTCTGTGTTCGATCTGTCGTTTCGTTTCGTTCCTTTTTTTTTTCTTTGTTTTTTTGGTAAGATTTGGTTTAGTTGATGTGCATGGAATCTTATCTCACAGAAATTGTGGGGAAATTTGCAGTTAAATTTCAGTTTCTTTTTCTTTTTAAATTTTTACTCTCTTTATCTTTTATGGTATTTTTCTATGTTGACTCTTAGAAAGGTAGTCTTTGCATTTGACGTTTTGTGAGCGGAAATCGGTGCTTCAATGGGACCCAAACTGTTTCGATTGTCGTGTCTATTTAGTTACTCAATTTTTTTAGTTGAACGACATTTGGGATAGAAGAATTTGAATTTTTTGTCTCGATGATACAATGTTAATTATTGTTG

mRNA sequence

GGCGACTCTCACTATTTCTTTCTCTCTCTCTCTTTCTCTCTGCTTTCCCCTTCTTTCGCCATTCCCAAATCCGCTCTCTCCATTCTCAAATCTCCGCCGGAGAATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCAGCCGATTACCTCTCCGAACCGCCTCCGCCGGCCGGACCGGTCCAGACGGTTGAATCTGCCGCCCCGCACTCGACTCTCCTGTCTCGGCCGCCGCAGCAGAGCCGCAACGCTGATCCGGCGGCGGCAAAGCCTCCTGCTCCGGCAGGTTCGAATGCAGGTCCGAATCCGGCCAGCTAATGGACCAACCGCCGCCGGATTCGACGGCGACGTTTTGGTCGATCGGAATTTGAAGATGAAGATGTAGGTTCTGTGTTCGATCTGTCGTTTCGTTTCGTTCCTTTTTTTTTTCTTTGTTTTTTTGGTAAGATTTGGTTTAGTTGATGTGCATGGAATCTTATCTCACAGAAATTGTGGGGAAATTTGCAGTTAAATTTCAGTTTCTTTTTCTTTTTAAATTTTTACTCTCTTTATCTTTTATGGTATTTTTCTATGTTGACTCTTAGAAAGGTAGTCTTTGCATTTGACGTTTTGTGAGCGGAAATCGGTGCTTCAATGGGACCCAAACTGTTTCGATTGTCGTGTCTATTTAGTTACTCAATTTTTTTAGTTGAACGACATTTGGGATAGAAGAATTTGAATTTTTTGTCTCGATGATACAATGTTAATTATTGTTG

Coding sequence (CDS)

ATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCAGCCGATTACCTCTCCGAACCGCCTCCGCCGGCCGGACCGGTCCAGACGGTTGAATCTGCCGCCCCGCACTCGACTCTCCTGTCTCGGCCGCCGCAGCAGAGCCGCAACGCTGATCCGGCGGCGGCAAAGCCTCCTGCTCCGGCAGGTTCGAATGCAGGTCCGAATCCGGCCAGCTAA

Protein sequence

MSQRPGRHQRRPSQGVFMAADYLSEPPPPAGPVQTVESAAPHSTLLSRPPQQSRNADPAAAKPPAPAGSNAGPNPAS
Homology
BLAST of Lcy06g022100 vs. ExPASy TrEMBL
Match: A0A5A7TPQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001830 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPP--AGPVQTVESAAPHSTLLSRPPQQSRNADP 60
          MSQRPGRHQRRPSQGVFMAADYLSEPPPP   GP  TVES  PHS LL+RPPQQSRNADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAAKPPAPAGSNAGPNPAS 78
           A +PPAPA +N   NPAS
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of Lcy06g022100 vs. ExPASy TrEMBL
Match: A0A0A0LAM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPAGPVQTVESAAPH-STLLSRPPQQSRNADPA 60
          MSQRP RHQRRPSQGVFM ADYLS+PPPP GP  TVES  PH STLL+RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 AAKPPAP--AGSNAGPNPAS 78
          AA+PPAP    +N  PNPAS
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

BLAST of Lcy06g022100 vs. NCBI nr
Match: KAA0044076.1 (hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK25061.1 hypothetical protein E5676_scaffold352G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPP--AGPVQTVESAAPHSTLLSRPPQQSRNADP 60
          MSQRPGRHQRRPSQGVFMAADYLSEPPPP   GP  TVES  PHS LL+RPPQQSRNADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAAKPPAPAGSNAGPNPAS 78
           A +PPAPA +N   NPAS
Sbjct: 61 VAPRPPAPAAANDAQNPAS 79

BLAST of Lcy06g022100 vs. NCBI nr
Match: KAG6596419.1 (hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPAGPVQTVESAAPHSTLLSRPPQQSRNADPAA 60
          MSQR GRHQRRPSQGVFM ADYLSEPPPP GP   VES  P S+ LSRPP QSR ADP A
Sbjct: 1  MSQRSGRHQRRPSQGVFMTADYLSEPPPPTGPPLPVESVDPQSSFLSRPPPQSRYADPPA 60

Query: 61 AKPPAPAGSNAGPNPAS 78
          A+PPAPA SN  PNPAS
Sbjct: 61 ARPPAPAVSNEAPNPAS 77

BLAST of Lcy06g022100 vs. NCBI nr
Match: KGN58888.1 (hypothetical protein Csa_002334 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPAGPVQTVESAAPH-STLLSRPPQQSRNADPA 60
          MSQRP RHQRRPSQGVFM ADYLS+PPPP GP  TVES  PH STLL+RP QQSR+ADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADPV 60

Query: 61 AAKPPAP--AGSNAGPNPAS 78
          AA+PPAP    +N  PNPAS
Sbjct: 61 AARPPAPPAVANNDAPNPAS 80

BLAST of Lcy06g022100 vs. NCBI nr
Match: KAG6580559.1 (hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPAGPVQTVESAAPHSTLLSRPPQQSRNADPAA 60
          MSQR GRHQRRPSQ VF+AADYLSEPP   GP   VE A PHS  L RPPQQSRNADPAA
Sbjct: 1  MSQRQGRHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSAHLPRPPQQSRNADPAA 60

Query: 61 AKPPAPAGSNAGPNPAS 78
           +PPAPA SN  PNP +
Sbjct: 61 PRPPAPAASNEAPNPTN 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TPQ11.2e-2278.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAM07.6e-2073.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0044076.12.6e-2278.48hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK250... [more]
KAG6596419.11.8e-2076.62hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN58888.11.6e-1973.75hypothetical protein Csa_002334 [Cucumis sativus][more]
KAG6580559.13.5e-1972.73hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g022100.1Lcy06g022100.1mRNA