Lcy06g021880 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g021880
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr06: 46841688 .. 46846973 (+)
RNA-Seq ExpressionLcy06g021880
SyntenyLcy06g021880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGTAATCGCTTTCTCCACCGCATAGCCTTTTTACAAATACCTCATTCTCCACTCCCAATGTCCAAACAAAACAACCACAAATCTCTCTCTCTCTCTCTCTTTGTCTGTTCCTCTGTTTTCGTCTCTGAATTCCTTGGATGGATCTTCAATGGCTTCTCGATTTCCTTCAAGGAATGACGAAGCCCTTTCTCGCCACTGCCATTGTCGCCGTCGCCGTCGTCCTCTCTTACTTGCAGAAGCTCGGCCTCGAAGGCGAAATGATCTACGCCATTTTCAGAGCCTTTCTCCAGCTCTCTGTTATTGGCTTCGTTCTTCAGTTCATCTTCAACCAGCAGAACCTCGCTTGGATCCTCCTCGCCTATCTCTTCATGGTAATTTCTCGCTTCCGTTTTATGCCTGCCAACTGTTTGATGTTTGGTTCCTCAGAAAATTTTATGCCCACATCAATGGGAATTGTATTTCTTTTCCGATCGGACAATACTTGATTGCATATCGAGATTTTTTCACACACATCGTTAAAATGTTAACAATTAGGGGAGTCAAAAAAAGGGTAAAATTATCAAAAATACCCCTGAACTAAGGGTTGGTTTCAATTATACCCTGAACTTTCAAAAGTTTTATTTTAATCTTCGAAAACGACCCTCGAAGACATTTTTCGTTAAATTTATGGACGGAAAAATTCAACGAAAAAATGCATGCACGAGTTATTTTGAGACAAAGTTCAAACTTTGTGGACTAAAACGAAACTTTGAAAGTTCATGTGTATAATTGAAACCAAACTCATAGTTTAGGGGTATATTTGATAATTTAACCAAAAACTTCTCATTTTCTATCATTTTTTTCCTTAATTGTCAATATTTTAATAGAGTGGTAGGAGATCAACGTTATGCAGCCAAGCAAAATATTTTTATTTCAATCAAAGTTTTAATTAAGTTATTTTCAAATGAAAAAACTCTGTTGCATATCGATATATAGACATTTTTTTACACGCCACTATTAAAATGTTTTTTTTTTAATTTTACTATTAGAAATACCTATATATGACTAGGTAAAATTATTGAAAAGTTTGAATCTCTATTTTTATTTCATTTTAACCAAGTAAACAAGTTGACTTCTAGAGAGTTCTCTTTTTTTTGGGGGGCTAAATTATAAAAAAAATGCCCTTAAACTATGGGATTTGTTTCAAAAATGTCTCTGAACTTTCAAAAGTTTAAAAAATACCTCTGAACTTAAAAAAATGTTTCAAAAATACCCTTGTTAATTTTTTTTTTTTTTGTTATGAAAACCATTAAAAACTTCAGTTTCATTAATACTCTATAACTTTCAAAATATTTAAAAAAATAATCTTATTAGAAAATGTTTTTTTTTTTCCTTATCCCACCGTAAATTCTTCTTCTATGAAAATTAATGAGAAGTTTTACCTATTTTTCATATATTCATACATTAGGAGTTTTTCTTCTCTTTCAACACATCATTCCAAGAGCTTGACTAGATTTTCGGCAATGGTATTTTCGAAACATTTTTAACAGTTTTAACTGTTTTTCATCCAAAAATTAACTACAAGGGTATTTTTTAAATGTTTTGTAAAGTTTAGGGGTATTTTTGAAATTTTTTAAAGTTCAGGGACATTTTGAAACAAATTCCATAGTTAGGGGCATTTTCTATAATTTAACCTTTTTTTGTTGGAAGAGAAGTTTTTATTTTCTTTTTTTTATAATGGGTTTCGCGTGGTTATCTGGTTTTGTGGGTGTCACGCTCATGAACTCTTTTGCGAAAATAGAGAGAATGTTTTCGGGATAATTTTGACAAATAATTGAGGTGGTATTTTTTTTTTTTTTTTTTTTTACTTTGACAAATATGACGTGATAATTTTGCAAGCTTCTTTTGATATTAACAGAAAATCATTTTGTAAATAGTTTTTTCTAGAAAAAATAATAATAATTATTATCCTGGGTGGATTTTATTTTCTGGTGTGTTTTTGTAATATTTGTATTACTTTCGCCTGTATATTTTAAGATTCTTTTTTTTTTTTAATTTGTTGATTTTAAGAATTAATTAGTGTTGAGAAAAAGTTGACTTTTTGATGGTCAACATGGGCTGAGCGTGACTATGTGCAGAGTTTATGAATTGGTTATAAGGATGGTCTATAGCTTTTTTTTTTTTTTTTTGTGTGAAAAAAATCATAGTCTATAGTTAAATTTTGGGGAATTTAAAATTTTGATTATTTCAAAAGTTTTTCTTAAGGCAAATTATAAATTTGATTATTATGATTTTAGCTTAATTTTAATTTTATTAGTTTAGTTTGTGTTTAGTTTGAATTTAGTCTTTGTACCTTGGACTAAATCTTATAAATCATTTTTGTTGCTACAATTCAAATACATGATTATTTAGGTCCCGTTTGATAATCATTTGGTTTCTGGTTTTTGAAAATTATGCTTGTTTTCTCTCAATTTTTCTACCATGGTTTTCATCTTTGTCAAGGAAACATTTGAATTCCTAGCTAAATTCCAAAAACAAAACCAAGTTTTTGAAAACTATTTTTTTTAGTTTTCAAAAATTGGCTTGGTTTTTGAAAACATGAAAAGAATGTATTAGGAAAACAAAGAAATTTGTAGGTGAAAGTAGTGTTTATAGGCTTAATTTTCAAAAACCAAAAACAAAAAATCAAATGGTTATCAAACGGGAACTTATTTATTTGACTATGAGCATGTGATTTGCTTTCAATTATGTTGCTAATTAACCAAATTAAGATATATGCAAAATATATATATATATATATATAAATAAAGCGAGTTAGGATTTTTTGTGGGTAAAAATGGTTTATAGACAATTTGTGAGTTCTAACCAAACCTCATCATCCAAATTGAAAACTTTTTATTTAAGATAGAAACCAAATTGAAAATTAAGTTCAAAACACAATGTCTAGGATCCTGTTTGATAACCATTTGGTTTTTTAAAATTATGCATGTTTTCTCCTAAATTCCAACTTTCATCCTAGTTAAGGTTGCATTTGAATTCCTAACCAAATTTTAAAAACAAAAACAAGTTTTTGAAAACTATTTTTTTTTTTTCAAAATTGGACTTGGTTTTTGAAAACAAAGTAGAAGAGTGATACTAAAACCAAAAAACTTATAGGTGGAAGCACGTGTGTATAAGTTTAATTTTCAAAAACAAAAAACCAAAAACCAAATGGTTATCAAACGGGGCCTAAATATTTTAATTCTTGTTCCATTGGTAAGTATATCCATTTTTGGATTTGAAATTCGTGGTTAAGTAACAAATTTATTCTCTTTGAACACATTTTCAATGGGATCCTTGTAGTTTTAAAAGTTTCAATTTAGTTCTTGTCACTTGGATTTGATTATTTTCAATTTGGTTCATATATTTCTTTTTATTTTTGCTCAACCCAAAACCTTAAATACAATTAACCAAATAGAAATCATCATCTCATTTTCACAAAAAAAAAAAAAAAAAAATAAATAAATAAATAAAAAATAAAAAACAAAACAAAAAAATGTAAATCAATTTAGGAAACTTGACTAGACTATACAAATCGGATTTGACTTTTTTTTTTTTTACAACAAATCAAATTTGACTTAGACAATAGAAATCAAATTTAATATTTTTCAAAGCACATAAATCGAGTTGAAACCAAACTCAAACTATAGGGATCAAATTTATAATTTTTTTAAAAATAAATGGGATCAAAATTATAATTTAGTCAAAATCAATTAACTTTATAATTGCTGCTGCAGGTGACGGTTGCGGGATACACAGCAGGGCAGCGTGCGAAGCACGTGCCTCGAGGAAAATTGGTCGCCGGAGCTTCAATTTTGGCCGGAACTTCAGTGACTATGGTGATGCTTGTGGTGTTAAAAGTCTTCCCCTTCACTCCAAGGTACATAATCCCGGTCGCCGGAATGATGGTCGGAAACGCCATGACTGTCACCGGCGTCACCATGAAGAGACTCAGAGACGATATCAGAACTCAATTCAGCCTCGTAATTTCTCTCTCCCTCATACTTTTGATTTTGCATCTAACAAATATGCGAACGTTCAATTTTGTATTTCATATGTTCTTGAATTTTTAACGTCGTGTCTAATAGAATTCTAATATTTTAATTCTTATTTTTGAAAAGTCCATAAATTTAAAGATAGAAAGTGTCTAATGGAACCTATCAAATATAAAATTGAAAGTTTTGAAATTTGTTAAATGCTTTGTAAAGTTTAAACACTTATAATAATCCGATTAGTAAACTTGAAATTTAACCTTTGAACCTTTTCTTTTTCTTTTTATTTATATCAAACACTTTTTGTGGAATTGGAAATTAATATTAGTACAAGATCTTAATTAGAATTCTGACCCCGAAAATGGGTTATTCGTACAAATTTTTCTAGACTTTTATATGAAATGGAGGGAAGCCATATTTTAGTAGTTTGAATATGAGTTGGTTTGGTTCAAAACCATGTTAAATTATGACTACGTTTAAAAGCTTAAACAAATGTTTGTGTATTTTAATATTTAAGTTACAAGTTTGATTTATAAGCTTTGTTACCCAAAGTTTTTAATATATGTTCTTAAATTTTCAATTGTGTTTAATTAAAATTTCAACATGAGCATAGCTTAACTGACATAATTTTTATAACGACTAAAAGGTTTGTGGTTTAAGTCTCCCACTCTCACATGTATTATTGTCGATAATCTATTAGACACAACGTTTCGAATTTAATAATGAATCTAATACTTTAACCACCATCTATTATTCAATTCAGGTGGAGACGGCGTTGGCTCTAGGAGCAACGCCGCGGCAAGCGACGCACCAGCAAGTGAAGAGAGCATTGGTGCTGGCATTGTCGCCGGTGGTCGACAACGCGAAGACGGTGGGGCTGATCTCGCTCCCGGGGGCGATGACGGGGCTGATAATGGGCGGAGCGTCTCCGATCGAAGCCATTCAGCTGCAAATTGTGGTGATGAATTTTCTGATCGGAGCTTCGACGGTGAGCAGTATAATGTCCACTTACCTCTGCTGGCCTTCCTTCTTCACCGCCGCCTACCAGTTGGAAACGGCCGTCTTTGCCTCCGCCTGATTTCCTTTGCCTTTCTCATTTCAGTTTTTCATTACTTTTTAGAGTTCAAATGTAAATTCAATTAGGCTAGTTTTTTGGTTTTTGTTTATAAACTTTAGTTTAATCCATAAATGGGCTAAAGTTTCGATTTAGTCTCTATGATTTGAAAATTTTTATTTTAGCGAATGATATGTTTTACTAATAATTTAGATTTGAA

mRNA sequence

CAAGTAATCGCTTTCTCCACCGCATAGCCTTTTTACAAATACCTCATTCTCCACTCCCAATGTCCAAACAAAACAACCACAAATCTCTCTCTCTCTCTCTCTTTGTCTGTTCCTCTGTTTTCGTCTCTGAATTCCTTGGATGGATCTTCAATGGCTTCTCGATTTCCTTCAAGGAATGACGAAGCCCTTTCTCGCCACTGCCATTGTCGCCGTCGCCGTCGTCCTCTCTTACTTGCAGAAGCTCGGCCTCGAAGGCGAAATGATCTACGCCATTTTCAGAGCCTTTCTCCAGCTCTCTGTTATTGGCTTCGTTCTTCAGTTCATCTTCAACCAGCAGAACCTCGCTTGGATCCTCCTCGCCTATCTCTTCATGGTGACGGTTGCGGGATACACAGCAGGGCAGCGTGCGAAGCACGTGCCTCGAGGAAAATTGGTCGCCGGAGCTTCAATTTTGGCCGGAACTTCAGTGACTATGGTGATGCTTGTGGTGTTAAAAGTCTTCCCCTTCACTCCAAGGTACATAATCCCGGTCGCCGGAATGATGGTCGGAAACGCCATGACTGTCACCGGCGTCACCATGAAGAGACTCAGAGACGATATCAGAACTCAATTCAGCCTCGTGGAGACGGCGTTGGCTCTAGGAGCAACGCCGCGGCAAGCGACGCACCAGCAAGTGAAGAGAGCATTGGTGCTGGCATTGTCGCCGGTGGTCGACAACGCGAAGACGGTGGGGCTGATCTCGCTCCCGGGGGCGATGACGGGGCTGATAATGGGCGGAGCGTCTCCGATCGAAGCCATTCAGCTGCAAATTGTGGTGATGAATTTTCTGATCGGAGCTTCGACGGTGAGCAGTATAATGTCCACTTACCTCTGCTGGCCTTCCTTCTTCACCGCCGCCTACCAGTTGGAAACGGCCGTCTTTGCCTCCGCCTGATTTCCTTTGCCTTTCTCATTTCAGTTTTTCATTACTTTTTAGAGTTCAAATGTAAATTCAATTAGGCTAGTTTTTTGGTTTTTGTTTATAAACTTTAGTTTAATCCATAAATGGGCTAAAGTTTCGATTTAGTCTCTATGATTTGAAAATTTTTATTTTAGCGAATGATATGTTTTACTAATAATTTAGATTTGAA

Coding sequence (CDS)

ATGGCTTCTCGATTTCCTTCAAGGAATGACGAAGCCCTTTCTCGCCACTGCCATTGTCGCCGTCGCCGTCGTCCTCTCTTACTTGCAGAAGCTCGGCCTCGAAGGCGAAATGATCTACGCCATTTTCAGAGCCTTTCTCCAGCTCTCTGTTATTGGCTTCGTTCTTCAGTTCATCTTCAACCAGCAGAACCTCGCTTGGATCCTCCTCGCCTATCTCTTCATGGTGACGGTTGCGGGATACACAGCAGGGCAGCGTGCGAAGCACGTGCCTCGAGGAAAATTGGTCGCCGGAGCTTCAATTTTGGCCGGAACTTCAGTGACTATGGTGATGCTTGTGGTGTTAAAAGTCTTCCCCTTCACTCCAAGGTACATAATCCCGGTCGCCGGAATGATGGTCGGAAACGCCATGACTGTCACCGGCGTCACCATGAAGAGACTCAGAGACGATATCAGAACTCAATTCAGCCTCGTGGAGACGGCGTTGGCTCTAGGAGCAACGCCGCGGCAAGCGACGCACCAGCAAGTGAAGAGAGCATTGGTGCTGGCATTGTCGCCGGTGGTCGACAACGCGAAGACGGTGGGGCTGATCTCGCTCCCGGGGGCGATGACGGGGCTGATAATGGGCGGAGCGTCTCCGATCGAAGCCATTCAGCTGCAAATTGTGGTGATGAATTTTCTGATCGGAGCTTCGACGGTGAGCAGTATAATGTCCACTTACCTCTGCTGGCCTTCCTTCTTCACCGCCGCCTACCAGTTGGAAACGGCCGTCTTTGCCTCCGCCTGATTTCCTTTGCCTTTCTCATTTCAGTTTTTCATTACTTTTTAGAGTTCAAATGTAAATTCAATTAG

Protein sequence

MASRFPSRNDEALSRHCHCRRRRRPLLLAEARPRRRNDLRHFQSLSPALCYWLRSSVHLQPAEPRLDPPRLSLHGDGCGIHSRAACEARASRKIGRRSFNFGRNFSDYGDACGVKSLPLHSKVHNPGRRNDGRKRHDCHRRHHEETQRRYQNSIQPRGDGVGSRSNAAASDAPASEESIGAGIVAGGRQREDGGADLAPGGDDGADNGRSVSDRSHSAANCGDEFSDRSFDGEQYNVHLPLLAFLLHRRLPVGNGRLCLRLISFAFLISVFHYFLEFKCKFN
Homology
[Close]
BLAST of Lcy06g021880 vs. ExPASy TrEMBL
Match: C0PC98 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-21
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 0 

Query: 64  PRLDPPRLSLHGDGCGIHSRAACEARASRKIGRRSFNFGRNFSDYGDACGVKSLPLHSKV 123
           P   PP  SL GDG  +H  AA  A A+R+  R   +  R+   +  AC  + LPLH  +
Sbjct: 15  PVAQPPNPSLAGDGRRVHGGAARRAGAAREAHRLRLHPRRHRRHHAPACPPRRLPLHPAL 74

Query: 124 HNPGRRNDGRKRHDCHRRHHEETQRRYQNSIQPRGDGVGSRSNAAASDAPASEESIGAGI 183
           H+P RR+DGR+RHD HRRHHEE     Q+  +P GDG G+  +AAA DA A E   G   
Sbjct: 75  HHPRRRHDGRQRHDRHRRHHEEAPGGRQDPEEPGGDGAGAGRDAAAGDAAAGEAVAGHRA 134

Query: 184 VAGGRQREDGGADLAPGGDDGADNGRSVS 213
           V G RQR+DGGA  A G  DGA +GR V+
Sbjct: 135 VPGDRQRQDGGAHRAAGRHDGAHHGRRVA 163

[Close]
BLAST of Lcy06g021880 vs. NCBI nr
Match: ACN31793.1 (unknown [Zea mays])

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-21
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 0 

Query: 64  PRLDPPRLSLHGDGCGIHSRAACEARASRKIGRRSFNFGRNFSDYGDACGVKSLPLHSKV 123
           P   PP  SL GDG  +H  AA  A A+R+  R   +  R+   +  AC  + LPLH  +
Sbjct: 15  PVAQPPNPSLAGDGRRVHGGAARRAGAAREAHRLRLHPRRHRRHHAPACPPRRLPLHPAL 74

Query: 124 HNPGRRNDGRKRHDCHRRHHEETQRRYQNSIQPRGDGVGSRSNAAASDAPASEESIGAGI 183
           H+P RR+DGR+RHD HRRHHEE     Q+  +P GDG G+  +AAA DA A E   G   
Sbjct: 75  HHPRRRHDGRQRHDRHRRHHEEAPGGRQDPEEPGGDGAGAGRDAAAGDAAAGEAVAGHRA 134

Query: 184 VAGGRQREDGGADLAPGGDDGADNGRSVS 213
           V G RQR+DGGA  A G  DGA +GR V+
Sbjct: 135 VPGDRQRQDGGAHRAAGRHDGAHHGRRVA 163

[Close]
BLAST of Lcy06g021880 vs. NCBI nr
Match: XP_038980165.1 (uncharacterized protein LOC108511366 isoform X1 [Phoenix dactylifera] >XP_038980166.1 uncharacterized protein LOC108511366 isoform X1 [Phoenix dactylifera] >XP_038980167.1 uncharacterized protein LOC108511366 isoform X1 [Phoenix dactylifera] >XP_038980168.1 uncharacterized protein LOC108511366 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0 

Query: 41  HFQSLSPALCYWLRSSVHLQPAEPRLDPPRLSLHGDGCGIHSRAACEARASRKIGRRSFN 100
           H Q LSPALCY +R+ VHL   E R+D PRL +HG  C ++SR+AC+A +S K+     +
Sbjct: 158 HRQGLSPALCYRVRAPVHLYAEECRVDHPRLLVHGICCWLYSRSACKACSSWKVHSWGVH 217

Query: 101 FGRNFSDYGDACGVKSLPLHSKV 124
           F RN SD+  A   + + LHS V
Sbjct: 218 FDRNSSDHVLARCTECVSLHSTV 240

[Close]
BLAST of Lcy06g021880 vs. NCBI nr
Match: XP_021302747.1 (UPF0014 membrane protein STAR2 isoform X2 [Sorghum bicolor])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-08
Identity = 51/115 (44.35%), Postives = 66/115 (57.39%), Query Frame = 0 

Query: 157 RGDGVGSRSNAAASDAPASEESIGAGIVAGGRQREDGGADLAPGGDDGADNGRSVSDRSH 216
           RGDG  S  +AAA DA A E   G   VAG RQR+DGGAD A G  DGA +GR V+   H
Sbjct: 187 RGDGACSGRDAAAGDAAAGEAVAGDRAVAGDRQRQDGGADRAAGRHDGAHHGRRVAAGGH 246

Query: 217 SAANCGDEFSDRSFDGEQYNVHLPLLAFLLHRRLPVGNGRLC-LRLISFAFLISV 271
            AA+   E +      +Q+ +HLPLLA +LH+ +P     LC L ++   F + V
Sbjct: 247 PAADRRHEHAYGCRHRQQHPLHLPLLAGILHQGVPARGQGLCGLVMLMVTFCVDV 301

[Close]
BLAST of Lcy06g021880 vs. NCBI nr
Match: XP_021302748.1 (UPF0014 membrane protein STAR2 isoform X3 [Sorghum bicolor])

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-08
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 157 RGDGVGSRSNAAASDAPASEESIGAGIVAGGRQREDGGADLAPGGDDGADNGRSVSDRSH 216
           RGDG  S  +AAA DA A E   G   VAG RQR+DGGAD A G  DGA +GR V+   H
Sbjct: 187 RGDGACSGRDAAAGDAAAGEAVAGDRAVAGDRQRQDGGADRAAGRHDGAHHGRRVAAGGH 246

Query: 217 SAANCGDEFSDRSFDGEQYNVHLPLLAFLLHRRLP 252
            AA+   E +      +Q+ +HLPLLA +LH+ LP
Sbjct: 247 PAADRRHEHAYGCRHRQQHPLHLPLLAGILHQGLP 281

The following BLAST results are available for this feature:
BLAST of Lcy06g021880 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g021880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
C0PC983.9e-2146.98Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
BLAST of Lcy06g021880 vs. NCBI nr
Match NameE-valueIdentityDescription
ACN31793.18.0e-2146.98unknown [Zea mays][more]
XP_038980165.11.4e-0946.99uncharacterized protein LOC108511366 isoform X1 [Phoenix dactylifera] >XP_038980... [more]
XP_021302747.11.6e-0844.35UPF0014 membrane protein STAR2 isoform X2 [Sorghum bicolor][more]
XP_021302748.15.9e-0849.47UPF0014 membrane protein STAR2 isoform X3 [Sorghum bicolor][more]
BLAST of Lcy06g021880 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..220

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g021880.1Lcy06g021880.1mRNA