Lcy06g021530 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g021530
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-binding protein S1FA
Location	Chr06: 46561266 .. 46563912 (+)
RNA-Seq Expression	Lcy06g021530
Synteny	Lcy06g021530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAACTAACAACATTATACATACGAGAGCCAAAACGATTGTCTAAAAAATTAAAGAAAATGGAAGGACCAAAATAAAATAACCCTAAAAATTCAGTGACTAGAAATTAAAGCTAAAATAAGACTTGAAACTAAATTTAAAATATGAATATTCTAAAAATAAAATAAAAAATACTACGAGCGTACACGAGCCCATTACGATGAAAAGAACGGCCCATAGAAAGCGCAGGACTCGGCTGGACCAAATCGCCGATTTATATGAATCTTTCCATTTTTCTTAGATCTCGCTCGCTGACATTTTTTCCGTCAACGCTTCACCGCCGATCCGATCCGATCCGTACAATTGCCTATATTCTGGATCTTCCTGCCGGCCGATCTATCCGGCTCTGAGTCGTAGTCATGGCTTCAGCCAATGGCAAGGTACGGTTGTCGAAGGAATCCCCCTTTGTTTCTTGCTTTTTCCGTTCAATTTCACGAGATCTGTGCTTTTTGGATTCCATTTTTGATTCTGTGTTCGAATGCCTTTTTCCTTCAATTTGGTTGTTTGGATCGATCTGGGTGCGTTGGGAATCGTCTTTTGTTCTTTTCTGAAAGCTCGATTTCATCTGGTTGGGCGGTGATTTGATTAGCGAGTGCTGGTTCGGATCGGAATTTTGTTTTGGGTTTTTTTGGCTGGGATTCTACGGGCGGGAAATTGAGCTTCTGATTGTTTGGCGCACGCATTGTAGGACCTGTAAATCTTGGTTCTAGAGATGGAATTTGTCTCTGGGGGGAAAATTTGGGGATGGATGAGCCGTACTGGCGAATTGTCGTTTAGAATTGGGGAAAATTTTAGGGATAGATGAACCGTACAGGCGAGTTGTCGTTTCAAATTGGGGAATTTCGAGTGGATGGGTTGTGAATGTGTGATCAGACTGCTTTGCAATATCGGCATTCATCATTGAAGTTTGGATGATATTTGAAATTATTATTTGTTTTGTGGAGAACTAATTTAAGATCAAAAGTGGGCTAGGTTTAAGAAAAATGATGAGAGTGAGAGAGGCCATTTTGGTTTATGCCTTAGAGTTCAATTAAGATAACTTTGTACAGAACTCCCTATGATTAGTTGAATTGTGATTTCTCATTATTAGAAGTGAATCTCCATTTCTGAAAGCGTCTAATTAGAAATTCCCTGATGAGATCTAAGTATAATTTAGATCATCCATTACTTTTGAAAAATATGTCATGATGGGTCTTGTTTATTGAAAACATCAACTTTGATTTTTTGGCTCATTGGTGATGGTTTATTAATTGTTGTTCTGCAAGTGAACAGGGAAATGTGATCAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTGCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAAAATATTTAACTTCCCGAGGTTTCCTTCTCTGTAGAACGTTTTGATTTTCAAAAATTTTCCTACATAGACTGCCTAGAAAGTTGTTACAGTTATTTCTTTTATCTACTGCCTTTAACTCTTCAGAAATCGAACTTGATTGTGAGTTTTTAACTCATATTTACATGGGCACTTTTCTCAAGGTTCCATTGACTCTTTACTACTTATTCCCCTCTTTTTGGTACACACCAGAAAGATTTTTGTTTCTCCATCTTTAAACAGCCTTAACTCAGTCCTTTTTACTATTAGAATCTTTTCTCTTTTTTTTTTTTTGCTTTTGATCTTTCAATAAATGGTGGGGTTAGATTGTAGACTCTATAGAGAGAGAGAAAGAGAGATTGCATGGCTGAGTGGTGGATTTGTGTAACTCTCTGTTAAGAAGATTACAAGACACTCTTTTCAACAGAAAGACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAAAGACATGTTCTTCAAGGGTCCATTACTTATTTGATTCACGTGGAACACTAGAGAGAGAACATTGAAGCCCAGAAAAGCTTACCTTTTACTGAAGCAAGCAAGTCATCTTGTCCCCTTCTGCGTTTTTATGGGATTCATTGTTTTCAAGTCTCGATCAACATAATTGCGGATTCTGTCCCAACAGGCAATGCTGATATAAAACACTCAGCTTTTAGACTTTTGCTATTTTTTGTGTTGGCTTGTTCTATCTCAGTTGCTTGCTTTGCCATACTCCCACAGGCAAGTCAGTGGCTTTTGATATGGGCAAAAGCAGCCCATTTTGCTTTTAACATTACCTGTGGTAAAGCCACAGTGTGTACCTGATCTCTGTAAACTTAGGTTGTGTGTATTTGTTTTTGTTGGAGAATGTTAGATGGGCAACTAAATTCTCCACTTTGTTTTATGTATTGTATATATCGTCATTGTCTTGTTTAAGTTGTATTGAGATGTCAGGTTGAGCTATTATGAGCATAGCTCAACGGGTGAAGAGATATATTATCGACCAAGAATTTTGAGGTGCAAATCTTCACTCCACATGTTAAACTAAAAAAAAATCATATTAAGATAATTAATGTTGTCTCAGGAG

mRNA sequence

AAACAACTAACAACATTATACATACGAGAGCCAAAACGATTGTCTAAAAAATTAAAGAAAATGGAAGGACCAAAATAAAATAACCCTAAAAATTCAGTGACTAGAAATTAAAGCTAAAATAAGACTTGAAACTAAATTTAAAATATGAATATTCTAAAAATAAAATAAAAAATACTACGAGCGTACACGAGCCCATTACGATGAAAAGAACGGCCCATAGAAAGCGCAGGACTCGGCTGGACCAAATCGCCGATTTATATGAATCTTTCCATTTTTCTTAGATCTCGCTCGCTGACATTTTTTCCGTCAACGCTTCACCGCCGATCCGATCCGATCCGTACAATTGCCTATATTCTGGATCTTCCTGCCGGCCGATCTATCCGGCTCTGAGTCGTAGTCATGGCTTCAGCCAATGGCAAGGGAAATGTGATCAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTGCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAAAATATTTAACTTCCCGAGGTTTCCTTCTCTGTAGAACGTTTTGATTTTCAAAAATTTTCCTACATAGACTGCCTAGAAAGTTGTTACAGTTATTTCTTTTATCTACTGCCTTTAACTCTTCAGAAATCGAACTTGATTGTGAGTTTTTAACTCATATTTACATGGGCACTTTTCTCAAGGTTCCATTGACTCTTTACTACTTATTCCCCTCTTTTTGGTACACACCAGAAAGATTTTTGTTTCTCCATCTTTAAACAGCCTTAACTCAGTCCTTTTTACTATTAGAATCTTTTCTCTTTTTTTTTTTTTGCTTTTGATCTTTCAATAAATGGTGGGGTTAGATTGTAGACTCTATAGAGAGAGAGAAAGAGAGATTGCATGGCTGAGTGGTGGATTTGTGTAACTCTCTGTTAAGAAGATTACAAGACACTCTTTTCAACAGAAAGACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAAAGACATGTTCTTCAAGGGTCCATTACTTATTTGATTCACGTGGAACACTAGAGAGAGAACATTGAAGCCCAGAAAAGCTTACCTTTTACTGAAGCAAGCAAGTCATCTTGTCCCCTTCTGCGTTTTTATGGGATTCATTGTTTTCAAGTCTCGATCAACATAATTGCGGATTCTGTCCCAACAGGCAATGCTGATATAAAACACTCAGCTTTTAGACTTTTGCTATTTTTTGTGTTGGCTTGTTCTATCTCAGTTGCTTGCTTTGCCATACTCCCACAGGCAAGTCAGTGGCTTTTGATATGGGCAAAAGCAGCCCATTTTGCTTTTAACATTACCTGTGGTAAAGCCACAGTGTGTACCTGATCTCTGTAAACTTAGGTTGTGTGTATTTGTTTTTGTTGGAGAATGTTAGATGGGCAACTAAATTCTCCACTTTGTTTTATGTATTGTATATATCGTCATTGTCTTGTTTAAGTTGTATTGAGATGTCAGGTTGAGCTATTATGAGCATAGCTCAACGGGTGAAGAGATATATTATCGACCAAGAATTTTGAGGTGCAAATCTTCACTCCACATGTTAAACTAAAAAAAAATCATATTAAGATAATTAATGTTGTCTCAGGAG

Coding sequence (CDS)

ATGGCTTCAGCCAATGGCAAGGGAAATGTGATCAATGATGTTGAAGCAAAAGGATTCAATCCAGGGCTAATAGTGCTTCTGCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Protein sequence

MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Homology

[Close]

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 11 INDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLK 70
          +N+VEAKG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 71 QGVSAPGE 79
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  VEAKG NPGLIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKK+KRE+LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 14 VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          +E+KG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-21
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 15 EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVS 74
          EAKG NPGLIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 75 APGE 79
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 4  ANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKK 63
          A+   NV+ +   KG NPG+IVL++V   LL+F VGNYALY+YAQK LPP+KKKPVSKKK
Sbjct: 6  ADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKK 65

Query: 64 MKRERLKQGVSAPGE 79
          MKRE+LKQGVSAPGE
Sbjct: 66 MKREKLKQGVSAPGE 80

[Close]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL
Match: A0A0A0LAW3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-32
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL
Match: A0A1S3B680 (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKGFNP LIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL
Match: A0A6J1KWU8 (DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498311 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKGFNPGL+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL
Match: A0A6J1IZV9 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.4e-31
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKG NP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKR+RLKQGVSAPGE
Sbjct: 61 KKKMKRDRLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL
Match: A0A6J1CUM0 (DNA-binding protein S1FA-like OS=Momordica charantia OX=3673 GN=LOC111014929 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.4e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MAS+N KGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASSNAKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKM++ERLKQGVSAPGE
Sbjct: 61 KKKMRKERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. NCBI nr
Match: XP_038905724.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. NCBI nr
Match: KAE8651038.1 (hypothetical protein Csa_000825 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
           MASANGKGNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 819 MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 878

Query: 61  KKKMKRERLKQGVSAPGE 79
           KKKMKRERLKQGVSAPGE
Sbjct: 879 KKKMKRERLKQGVSAPGE 896

[Close]

BLAST of Lcy06g021530 vs. NCBI nr
Match: XP_004137812.1 (DNA-binding protein S1FA [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. NCBI nr
Match: XP_008442666.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKGFNP LIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. NCBI nr
Match: XP_023005220.1 (DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-binding protein S1FA-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6596464.1 DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028009.1 DNA-binding protein S1FA2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.0e-31
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKGFNPGL+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of Lcy06g021530 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MASANGKGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  VEAKG NPGLIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKK+KRE+LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]

BLAST of Lcy06g021530 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 14 VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          +E+KG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of Lcy06g021530 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-22
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 15 EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVS 74
          EAKG NPGLIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 75 APGE 79
           PGE
Sbjct: 73 VPGE 76

[Close]

BLAST of Lcy06g021530 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 46 YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE 79
          +A KNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:

BLAST of Lcy06g021530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	2.2e-24	82.35	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
Q42337	1.8e-21	66.67	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
Q93VI0	1.8e-21	76.92	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
P42551	2.3e-21	79.69	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q7XLX6	5.1e-21	69.33	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]

BLAST of Lcy06g021530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW3	8.7e-32	97.44	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1	[more]
A0A1S3B680	2.5e-31	97.44	DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1	[more]
A0A6J1KWU8	4.3e-31	94.87	DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1IZV9	7.4e-31	96.15	DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 S...	[more]
A0A6J1CUM0	7.4e-31	94.87	DNA-binding protein S1FA-like OS=Momordica charantia OX=3673 GN=LOC111014929 PE=...	[more]

BLAST of Lcy06g021530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905724.1	1.4e-31	98.72	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
KAE8651038.1	1.8e-31	97.44	hypothetical protein Csa_000825 [Cucumis sativus]	[more]
XP_004137812.1	1.8e-31	97.44	DNA-binding protein S1FA [Cucumis sativus]	[more]
XP_008442666.1	5.3e-31	97.44	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]	[more]
XP_023005220.1	9.0e-31	94.87	DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-...	[more]

BLAST of Lcy06g021530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37120.1	1.2e-22	66.67	S1FA-like DNA-binding protein	[more]
AT3G09735.1	1.2e-22	76.92	S1FA-like DNA-binding protein	[more]
AT3G53370.1	1.6e-22	79.69	S1FA-like DNA-binding protein	[more]
AT3G53370.2	6.7e-08	78.79	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 14..78 e-value: 2.1E-40 score: 136.7
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 6..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 6..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g021530.1	Lcy06g021530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding