Lcy06g021250 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g021250
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr06: 46329653 .. 46332357 (-)
RNA-Seq ExpressionLcy06g021250
SyntenyLcy06g021250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAACGAAAGAAGCAGTGCTTCTGAGAAGCCAAAGCGAGAGAGACGAAGAAATGGAGAAGTATTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGCTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGCTCTCACCTGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAAGTACTCTTCTCCGATCTCTCTCTGTTTGTTTGCAGTCAATTTAGGGTTCTATTTTCAGGGAAACGCCTCAATTCAATAATTATTGTCTTGCTTTCCAATTCGCTTTCCTGCTTCGTCGCTCTGTTGTTATGTACTGATGTTCAATTTCTGTTGGAATAGCTTCACCTTGTTTAACTGTTAGAGTTGGAGTTTTGATGAGGAATTTGTCGAGGATTTATTTGTGTGAGATTCCGATTGTAAACCTGCTTTACATGCCTGTATAGTGATCCCAGTAGGCCTTATCGCTCTAGAAGTTTCAGTGACTTGGCTGTACAGTGATAATCTTATTACTTATTATTCATCATTCAACTGGTTGTGAAATTGGAATGTATAGTGATAGATAGTCTTTCATGGACTGTCTAGTGATAATTTTACCACTTATTGTTCATTTCCCTGTATAGGATTGTACATCTTCTTTTCTGCGGAAGTGTTAATTCTGTTATTGGACTTTGTATTCCTTTCACATTAGAATTTATGCTATTCTCCAAAAATGATTTTTTGCTGATGCATCTACATGTGCCGAGAAGAAAAGAAATTTGCTCTTCCTGACGTCTTCTGGCAAGTACATGAAGTATTGTAATTATAAATGCTTTTCTTCTTATGTTTGGATTCGGCTTCTTTTAGTCTTAAGAGAACACTCTCTTATATGAATCTGATATAGTGGATCTTTAGATCAGTTTATGTCTCATGTTATCACTTGGTTCATCGATGTTGTCTTTTAACTTAGAAGCACGAATCTAATTTTGATGAAATGTACATGGTGGGTTGTTAATTTAGGAGATATTGGCATCCTTTCTTGTAAGCATTTTGATGAAATGTACATGCTGGGTTGTCTATGCCTCTCTTGTTGCTCGTAGTGCACTTTCTTGTCATCTTTATTCTCGGCTCATACTTGAAGCGAGAGTTCTCAATTTGTAATTTGTAGTTGGCATGACAAAGCATTTTTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAGCCATACCAGTTCAAGGTACATTGTTCTACTCCAGTTTATATGGAAGTAAACAAGCACATATTATTGCATATGAGCAATATTATTCTTTTAAGATCTCATGGTGTGGTTATGTTTCTCTTACAAAATTTTCACTTCTGCAGTGGAATCAGTACATGGACAAGGACCATCGGGAATCCTACTATTTTAACTGGCCCGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAATACTGATGCTTGGCTGCTTAGTTATTTGGTTCGTTAGAGTGGCAAAGTGAGAGTAGTACTGCACTAAGGTTTGAAGTTTTAAGAATTTGTATAATCATATTTCTCAAGACCCGTTTGGATAACAGCCTGTCGAGTGGTCATTCTATACTGTAGTAATCATTTTGAGAATGAATGAATCATAGGAGGTACTATTTGCAATCATGTGACCAAAATCTGAATGACATTTTATATCATACTGAAATGGAGCTTTGTAACTGAAAGAAGTGCTACAACTCTGTGGCTGTCCCCAAGTGAGATGCTCTCTCCCTCCTGATTAATAGATATTAAGGACATGATTGGGAGGAATTTTAGAATAACGAAAGTCATTTTCATCATGTCTTTTTTAATAATTTTGGACACGACAAAAGTGATAGGTCATTCTAAAATCACTCAAACATACTCTATTTTTTTGGGTACCAATAATGATAATCATGGGTACAATGATATTCCATTCAGCTTGGCTTTGATCTAGGCACATTTTCATCATTTTGTTGTGGTGTCGTATAGATTTTAGATCTTGGCATTATTCTTTTTACTTTCTACCATATACCTTTTCATTTAATTCTTGGATTGTTCCAAATTCCTTCGATCCGATGGAAATGGTCGATTCGATTATGATCATTGCATTTTGCAGGTAGGGTATTCTGATTCCAAGATGATACAGAAACCCAGCTTCATTTATGGATTTCTTATAGCACAGCACATCACTATTGCTGTTTTTACAGCCCATCCAAGCTCACTGCTGCAATTGGGCCTGGATTTTTAGTCAAGGCCCAAAATGAATCTTTGGGCCAAAACTTCATCTGTTGCCACGTCTGAACAACTGTACCCTCTTTTGAGGCACATCCATAATTCTGCTTTTTGCATAAAGGAAAAAGGTCATATGTCCAAAATAAAGCATCTTCCTTCCAAAAGATTCCAACTTGTACCACTTATCATATTTGACAAGCAAATTCCCACCTATGGAAGAACTGTTTGAATTCAAAGATGGGGAAAAAGGAAAAAAAAAAAAAAGGTAAGAAAGCATTGGAGAAGAGAATTTCAACCAAGTTTTGAAGACCTTTTCCTTTTCCATTAGCTTATCTAAATATAAAAGTCAAATTAGAATGATTATGGTGATCAACTTCATTCTTCATTATGATGATGATATTCACCAAGATATTGTTCATTCTCCTATACTTGAAAATGGGTGAATTTCCCTTTA

mRNA sequence

AAAGAACGAAAGAAGCAGTGCTTCTGAGAAGCCAAAGCGAGAGAGACGAAGAAATGGAGAAGTATTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGCTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGCTCTCACCTGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAATTGGCATGACAAAGCATTTTTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAGCCATACCAGTTCAAGTGGAATCAGTACATGGACAAGGACCATCGGGAATCCTACTATTTTAACTGGCCCGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAATACTGATGCTTGGCTGCTTAGTTATTTGGTTCGTTAGAGTGGCAAAGTGAGAGTAGTACTGCACTAAGGTTTGAAGTTTTAAGAATTTGTATAATCATATTTCTCAAGACCCGTTTGGATAACAGCCTGTCGAGTGGTCATTCTATACTGTAGTAATCATTTTGAGAATGAATGAATCATAGGAGGTACTATTTGCAATCATGTGACCAAAATCTGAATGACATTTTATATCATACTGAAATGGAGCTTTGTAACTGAAAGAAGTGCTACAACTCTGTGGCTGTCCCCAAGTGAGATGCTCTCTCCCTCCTGATTAATAGATATTAAGGACATGATTGGGAGGAATTTTAGAATAACGAAAGTCATTTTCATCATGTCTTTTTTAATAATTTTGGACACGACAAAAGTGATAGGTCATTCTAAAATCACTCAAACATACTCTATTTTTTTGGGTACCAATAATGATAATCATGGGTACAATGATATTCCATTCAGCTTGGCTTTGATCTAGGCACATTTTCATCATTTTGTTGTGGTGTCGTATAGATTTTAGATCTTGGCATTATTCTTTTTACTTTCTACCATATACCTTTTCATTTAATTCTTGGATTGTTCCAAATTCCTTCGATCCGATGGAAATGGTCGATTCGATTATGATCATTGCATTTTGCAGGTAGGGTATTCTGATTCCAAGATGATACAGAAACCCAGCTTCATTTATGGATTTCTTATAGCACAGCACATCACTATTGCTGTTTTTACAGCCCATCCAAGCTCACTGCTGCAATTGGGCCTGGATTTTTAGTCAAGGCCCAAAATGAATCTTTGGGCCAAAACTTCATCTGTTGCCACGTCTGAACAACTGTACCCTCTTTTGAGGCACATCCATAATTCTGCTTTTTGCATAAAGGAAAAAGGTCATATGTCCAAAATAAAGCATCTTCCTTCCAAAAGATTCCAACTTGTACCACTTATCATATTTGACAAGCAAATTCCCACCTATGGAAGAACTGTTTGAATTCAAAGATGGGGAAAAAGGAAAAAAAAAAAAAAGGTAAGAAAGCATTGGAGAAGAGAATTTCAACCAAGTTTTGAAGACCTTTTCCTTTTCCATTAGCTTATCTAAATATAAAAGTCAAATTAGAATGATTATGGTGATCAACTTCATTCTTCATTATGATGATGATATTCACCAAGATATTGTTCATTCTCCTATACTTGAAAATGGGTGAATTTCCCTTTA

Coding sequence (CDS)

ATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGCTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGCTCTCACCTGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAATTGGCATGACAAAGCATTTTTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAGCCATACCAGTTCAAGTGGAATCAGTACATGGACAAGGACCATCGGGAATCCTACTATTTTAACTGGCCCGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAATACTGATGCTTGGCTGCTTAGTTATTTGGTTCGTTAGAGTGGCAAAGTGA

Protein sequence

MLTEATLEFHTPTQIASSTFGLDPPPSPLSPGSIPTCGNSPINSIGMTKHFCLSNTTGKRPDKRISHTSSSGISTWTRTIGNPTILTGPCTFLRLSDYVRILMLGCLVIWFVRVAK
Homology
[Close]
BLAST of Lcy06g021250 vs. ExPASy TrEMBL
Match: A0A2I0VT32 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca006889 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 1   MLTEATLEFHTPTQIASSTFGLDPPPSPLSPGSIPTCGNSPINSIGMTKHFCLSNTTGKR 60
           +L    L  HTP   A  T GL   PSP SP S  TCG+ P NS GMT+  CLS T G++
Sbjct: 42  ILIAVILACHTPIPNALQTSGLAHSPSPPSPSSTLTCGSCPTNSTGMTRPCCLSTTIGRK 101

Query: 61  PDKRISHTSS 71
           P ++ SH SS
Sbjct: 102 PRRKGSHISS 111

[Close]
BLAST of Lcy06g021250 vs. NCBI nr
Match: PKU66561.1 (hypothetical protein MA16_Dca006889 [Dendrobium catenatum])

HSP 1 Score: 60.8 bits (146), Expect = 8.7e-06
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 1   MLTEATLEFHTPTQIASSTFGLDPPPSPLSPGSIPTCGNSPINSIGMTKHFCLSNTTGKR 60
           +L    L  HTP   A  T GL   PSP SP S  TCG+ P NS GMT+  CLS T G++
Sbjct: 42  ILIAVILACHTPIPNALQTSGLAHSPSPPSPSSTLTCGSCPTNSTGMTRPCCLSTTIGRK 101

Query: 61  PDKRISHTSS 71
           P ++ SH SS
Sbjct: 102 PRRKGSHISS 111

The following BLAST results are available for this feature:
BLAST of Lcy06g021250 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g021250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I0VT324.2e-0648.57Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca006889 PE=4... [more]
BLAST of Lcy06g021250 vs. NCBI nr
Match NameE-valueIdentityDescription
PKU66561.18.7e-0648.57hypothetical protein MA16_Dca006889 [Dendrobium catenatum][more]
BLAST of Lcy06g021250 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g021250.1Lcy06g021250.1mRNA