Lcy06g020420 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g020420
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr06: 45224847 .. 45225926 (-)
RNA-Seq ExpressionLcy06g020420
SyntenyLcy06g020420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGATGATACGTACCAATTGGTGAATCCAAGACCTCCTTCGACCAACGATCCAGCATCGTAGCTTAAATGGATTTTGTTGAGGATCCCACATTGAAAATATAAGTGGAGACCTCACAATGCTCTTCCTACTAACATCAATGTTTCAAAGAAAGGGATCGATACTAATTTGGCTTGTTTTATGTGCAGGAGCAAAGAGGAATCAAATGAACACATCTTTTGGGACTGTAAGGTAGCCAAAAATTTATGGAATTCTTTTCTCCCTAGCTTATGGAACTGTCTTCCGTGTCACAGGGAGCAATGGAGAGCCATGGATTATTGGGAGTTTATGACCAACCAGTGGAGCAAATTAAAGAAGAGCTATCCAAAGCAGCCTTATTGATGTGGGTTCTATGGAATACGCGCAATAAAAGCAGAATTAGTCGTGGCATACCTGACATTGAGAGCATCAATAGGTCGATGAGGCCTCAAAAAGCATCTGGAAGCAGCAGCGTTGAAGAGCCCGATGAGTCACCCTTCTTGGAGGCCACCGGATCTTGGTTCGTGGAAGCTCAACTCGGACGCGTCTTGGATCGATTCCATCAAAAAAGGTGGTTTAGGATGGGTGATTCGTGACTCATCTGGATCTTTAATTGGAGCAAGCTGCAAGCAAGTTTCTCGATCTTGGTCAGTTAAAGCCCTTGAAGGCGAGGCTTTGTTAGAAGGAGTGAGAGCGTACCTGAATTGGGTCGATGCTGGCAATCTCACCCTCCCCCTGGCCGCTGAATCGGACTCCTTAGGCATCATCAAGGCGGTTGCAGGCGAGGAGGAAGATTTTTCGGAAGTGGGTTTGATTATTGACTCCATTGTCTGTTTGTCGAAGGATAAATCCATTTCTTTCTCTTTTTGTAATAGGAACTGCAATACTTTGGCCCATCAAGTTGCTCTTGCAGCAGCAAAATATGGGAGTTGCTCTGTTTTTTTTTTTTGTCATGCATTTTCCTGTACGTGGGAAGATGTGGTGCGGATGAGGGATGAGGATATCCCTCAATGGTTCATTAATTCTTTTGCTGATGTAGTTGGTGGTTGTGTTTAA

mRNA sequence

ATGGAAGAAGATGATACGTACCAATTGGTGAATCCAAGACCTCCTTCGACCAACGATCCAGCATCGAGCAAAGAGGAATCAAATGAACACATCTTTTGGGACTGTAAGCTTATGGAACTGTCTTCCGTGTCACAGGGAGCAATGGAGAGCCATGGATTATTGGGAGTTTATGACCAACCAGTGGAGCAAATTAAAGAAGAGCTATCCAAAGCAGCCTTATTGATGTGGGTTCTATGGAATACGCGCAATAAAAGCAGAATTAGTCTTAAAGCCCTTGAAGGCGAGGCTTTGTTAGAAGGAGTGAGAGCGTACCTGAATTGGGTCGATGCTGGCAATCTCACCCTCCCCCTGGCCGCTGAATCGGACTCCTTAGGCATCATCAAGGCGGTTGCAGGCGAGGAGGAAGATTTTTCGGAAGTGGGTTTGATTATTGACTCCATTGTCTGTTTGTCGAAGGATAAATCCATTTCTTTCTCTTTTTGTAATAGGAACTGCAATACTTTGGCCCATCAAGTTGCTCTTGCAGCAGCAAAATATGGGAGTTGCTCTGTTTTTTTTTTTTGTCATGCATTTTCCTGTACGTGGGAAGATGTGGTGCGGATGAGGGATGAGGATATCCCTCAATGGTTCATTAATTCTTTTGCTGATGTAGTTGGTGGTTGTGTTTAA

Coding sequence (CDS)

ATGGAAGAAGATGATACGTACCAATTGGTGAATCCAAGACCTCCTTCGACCAACGATCCAGCATCGAGCAAAGAGGAATCAAATGAACACATCTTTTGGGACTGTAAGCTTATGGAACTGTCTTCCGTGTCACAGGGAGCAATGGAGAGCCATGGATTATTGGGAGTTTATGACCAACCAGTGGAGCAAATTAAAGAAGAGCTATCCAAAGCAGCCTTATTGATGTGGGTTCTATGGAATACGCGCAATAAAAGCAGAATTAGTCTTAAAGCCCTTGAAGGCGAGGCTTTGTTAGAAGGAGTGAGAGCGTACCTGAATTGGGTCGATGCTGGCAATCTCACCCTCCCCCTGGCCGCTGAATCGGACTCCTTAGGCATCATCAAGGCGGTTGCAGGCGAGGAGGAAGATTTTTCGGAAGTGGGTTTGATTATTGACTCCATTGTCTGTTTGTCGAAGGATAAATCCATTTCTTTCTCTTTTTGTAATAGGAACTGCAATACTTTGGCCCATCAAGTTGCTCTTGCAGCAGCAAAATATGGGAGTTGCTCTGTTTTTTTTTTTTGTCATGCATTTTCCTGTACGTGGGAAGATGTGGTGCGGATGAGGGATGAGGATATCCCTCAATGGTTCATTAATTCTTTTGCTGATGTAGTTGGTGGTTGTGTTTAA

Protein sequence

MEEDDTYQLVNPRPPSTNDPASSKEESNEHIFWDCKLMELSSVSQGAMESHGLLGVYDQPVEQIKEELSKAALLMWVLWNTRNKSRISLKALEGEALLEGVRAYLNWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFSEVGLIIDSIVCLSKDKSISFSFCNRNCNTLAHQVALAAAKYGSCSVFFFCHAFSCTWEDVVRMRDEDIPQWFINSFADVVGGCV
Homology
[Close]
BLAST of Lcy06g020420 vs. ExPASy TrEMBL
Match: A0A2K3L6G5 (RNase H domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g030044 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-04
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 83  NKSRISLKALEGEALLEGVRAYLNWVDA-GNLTLPLAAESDSLGIIKAVAGEEEDFSEVG 142
           NKS  S    EGEA  +G+   L W+ A G LT+P+  E+D L +++ +  ++++++E  
Sbjct: 14  NKSYGSPTISEGEA--KGLLDVLEWLSASGKLTMPITIETDCLRVVQTLQSKQKNYTEFA 73

Query: 143 LIIDSI-VCLSKDKSISFSFCNRNCNTLAHQVALAAAKYGSCSVFFFCHA 191
            IID     ++  ++ S S+  R  N +A  +A A+    S  VFFF  A
Sbjct: 74  KIIDQCWSIVNSHQNYSISYVRRQANRVARDLAQASHFIASPQVFFFVSA 121

The following BLAST results are available for this feature:
BLAST of Lcy06g020420 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g020420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2K3L6G55.8e-0432.73RNase H domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g030044... [more]
BLAST of Lcy06g020420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lcy06g020420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 85..173
e-value: 3.5E-7
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g020420.1Lcy06g020420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity