Lcy06g019800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g019800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine-rich RNA-binding protein 4
Location	Chr06: 44528085 .. 44531266 (-)
RNA-Seq Expression	Lcy06g019800
Synteny	Lcy06g019800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATTTCAGCCTTCACCATCTGGGCTCGGCCCAGAATGCGGCCAGAATTGGGCTTTGAAACTTTTATACGACCATTCGTCGCCGTTGCTGCTCCAGTCAAACCTCCGGCCGCCGTTCTTTCACCCGCTCTCTTGACTCGAACATGAACGCATAGCATCACCCTCATACTACTACCATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAGCTCAACGTTCCTCCTCTCTATTCTACTCTTAGTTTTCCGATTCATCATATCTGCAGTTTACGTTTTAGCATCGAAATCACACTTTTTTGCCGCGATTTTTTTTTTTTTTTTTATGCTGATTAACTGTTCCTCTGTTTCCGTGAATTGAGCTAACTGTGTAGTCTGCGCGAGAGACTGTGAATTGTTTGAAGTAAGGTCTCTGTGATGTCCGCACGTTAAGTTTTGTGAAGTATGAACTTTGTTTTGATCTTAAAAGTGAAAGTATAACTGTATAAATGTGAGCTTCTGTACTAATTTACTTCAGGAAACCGAGATCGTGGAAAACTCTGGAGAAAAATTCTTGTATTGATATTCATTTCAAAATTGATATCCGTTCTATATATTATTAAGGATAGACATCTATTGGATATGTATGCTTCCACTTAATGTTGATGTCAAAGATCAAAAGGATGGATTGATATGAAAGGAATGTACAGAATTTTTTTAAATGTTTCATCCTTGATGTTAAGAATATGTCCATGTACTTATGGAGGGACAAAAAATAGCAGAGCTCGTACATCCAACGTCTCTCACCAAGGGAAAGACCAGGAAAATGAAAAACCAGACTGTAAAACCTGGACTTCTCTAGTAAGAGCTTCCTTAGCTAAATTATGTGTCTTGATGTCCATAAGCACCAAGCCAATTTTTTAGAGATCTTCCTCTTCATCATTCAACATGTTTCTTTTTGCCACTTCTGAGGATGGCTAAGTTCCTAAGCCCCAAGCCAGTAGCTAGAATGTAATGTAAACCTCCCAAATAGCTTCATTGTCCACCAAGAGTACGTGTCTTCTTTGTGAGTCTTGGCTTGCCCTTTGCCCCTAAAGAATCTGGTAGCAAAATGAAGGTTAGAGAAGTGGGTGTAAACAGTAAATAAGGGTGGCACTTCTAGGAAGAGAGTAAGATAATCAAGGAATTTTGCTTGCTCCATAAACTATGATAGTAAACTTCATTTGAAGTTGGGTAGATCTAAGAGGGATCTTAAGGATGTTGAGGGTTCTTGCAAGGAGGTGTAGGGTTTGGCCTGTTTTAATGATTCTCTTTATGTTTCTATGACTAAATTATCTGTAATCTTCATATTAGTTTTGATTTTTAATAATGGGAATCTTCTTTTGTAATGTCGGCTCTTCGGTTGGGCTTCCCTTTTTGTATGATTTTTGCTTTTGTTCTTTCATTTATCTGAATGAAAATTGGTTTCTTGTCGAGGAAAAAAAAAAGATAATGGTTGGCTTGTCGAAGAACCATGGTCCATATGCTTAGAAGTTTTCATTTTTTAGTCCTGAAATTGGAAGTTTCCTCACTAATGATACCTCTTTTTAGTTTGCTACAATTTCTTCATAAACCATCACAGCTTGTTTATCTTCTTCCATGAAACTGAACTCCCTAAATCTGTCTGCAATTGTATTGGAAGATCTACTTCGGTTGCCATTGCTCATTGTACTTGACCGCCAAAACCAGCAAGCACTGGAGGCTGAAGGAGCTAAAAATGTAGCATATCTCTTAAACTCTCATAAGAAGAAAACCTATAGAAACCTAGAATGAATAGGCAGCTTTAGGTTTATATATCTAGGATGTGTCAGGTTCTTTAAGATGCAAATAATCTGCAGTGGATGTCATTTATGGGTGATATACAACTAGAGACCAAGAATGTACTCGCAGTCGCAGCTTAGGTTTAACCTTGATTGTGGTAAACTGTTACTGTGTTCTTGTTCTGCTAGACTGCCACATCAACTTGTTCTTTAATGGGATTTGTGGATTTTGAGGAACTGACCCAATACTTATCCCTCCTTCATTGTTAACCTTTGTAAGTTTTTTTTCCCTTTCTGGAAGATTCTTACATGTCACATTGATTAATAGGAATGTTTATTGTTCTTATGAAAAAGAATAGAATCATTTGTCTAATAATGCTCTCGAGATTTTTGCTATTGATTATTTTATCAGTCTATACATATTACAACTCATTCCATATTGAAATCACTTTCTGGAATATTTTGCTACAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGGTGACTCCCATTCAGATACTTTAGATTTCATGTCTAACCATGGAAATTTAGTTTCATGGAGCATAACACAATTTTCTCTACTCCAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGGTCTGCAGTCTGCACTTTCCTCTATCATTACTTTTACTGTTTTACATTTTAGAATTTAAGTCTAATGGTTATTTGTTGCAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGATTGCTCATAGAATTTTGCTTTGTCATTTATCAAAAATAAATTAGCTGAAAAGGGAGGGAATAACCCATGTAGCTGTGCGTGAAAAGTGTGATTCAGACGTGTTCTTTCAGCAATTTGCTTCATGCCAGAGATTTGAAAAGCTTCAGGAACTAGAGGTCAGCTTGCAGGAATCTTTAAAATTCGATGAAATTAGATTAACAGATTCTGTTTCTCTTCTCAAAAAAAAGATTAACAGATTGATTTTTTTAAAAAAATATTTAAGTTTGCTTCTTATTAGTTAAGTATCTTATTAACTATAGTTAAACTGAAATTCAGACGTTTTTTTATGTATTTCCTTAGTTCTCAGATTGATGATATATTGTGATAGTAATCTTTCTTTTCACAACCATTAA

mRNA sequence

GTAAATTTCAGCCTTCACCATCTGGGCTCGGCCCAGAATGCGGCCAGAATTGGGCTTTGAAACTTTTATACGACCATTCGTCGCCGTTGCTGCTCCAGTCAAACCTCCGGCCGCCGTTCTTTCACCCGCTCTCTTGACTCGAACATGAACGCATAGCATCACCCTCATACTACTACCATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGATTGCTCATAGAATTTTGCTTTGTCATTTATCAAAAATAAATTAGCTGAAAAGGGAGGGAATAACCCATGTAGCTGTGCGTGAAAAGTGTGATTCAGACGTGTTCTTTCAGCAATTTGCTTCATGCCAGAGATTTGAAAAGCTTCAGGAACTAGAGGTCAGCTTGCAGGAATCTTTAAAATTCGATGAAATTAGATTAACAGATTCTGTTTCTCTTCTCAAAAAAAAGATTAACAGATTGATTTTTTTAAAAAAATATTTAAGTTTGCTTCTTATTAGTTAAGTATCTTATTAACTATAGTTAAACTGAAATTCAGACGTTTTTTTATGTATTTCCTTAGTTCTCAGATTGATGATATATTGTGATAGTAATCTTTCTTTTCACAACCATTAA

Coding sequence (CDS)

ATGGCGGCGATCAGAAAAGCTATGGCACTAGCCTCCAATCGTCGTGTTCTTCCCTCTCTATTATCACCGCCGTCTCGCCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTCTCATTTTACACCACGGACAAAGGACTGTCAGAAGCCTTTTCTCAATATGGTCAAGTTGTCGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGATGAAGCACATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAATGGAAGGGTTATTTTTGTGGACTATGCAAAACCGACATCCAATTTTCGTGGCGGAATTCCTATAGCAAGAGGACCTCCTGAGGAGAAAACTGATAAATGA

Protein sequence

MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGGIPIARGPPEEKTDK

Homology

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BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-34
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKPLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

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BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-20
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFRGG 121
            ED A+ A+ EM+GK LNGR I V+ A      P S+F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

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BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGL+F TT++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGK ++GR I VD A  +SN     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRG 102

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BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-18
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLF+ GLSFYT++K L  AF  +G++VE K++MD++S +SKG+ F+ + +E+ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKPLNGRVIFVDYAKPTSNFR 119
           MNGK +NG +I VD AK T  FR
Sbjct: 343 MNGKIINGWMIVVDVAK-TKPFR 364

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BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 36  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGLSF T ++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGK ++GR I VD A  +S+     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

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BLAST of Lcy06g019800 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++SNR VLPS+ +PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

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BLAST of Lcy06g019800 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++S+RRVL SL  PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

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BLAST of Lcy06g019800 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKA+A++SNRRVLPSL  PPSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Lcy06g019800 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMA+ SNRRVLPSL  PPSRLVS+RGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Lcy06g019800 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKA+A++SNRRVLPSL  PPSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Lcy06g019800 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62
Identity = 124/134 (92.54%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++SNR VLPS+ +PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Lcy06g019800 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida])

HSP 1 Score: 243.8 bits (621), Expect = 8.4e-61
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           M AIRKAMA++SNR VLPSL + PSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAISSNRCVLPSLFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTS FR G
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSKFRSG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Lcy06g019800 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++S+RRVL SL  PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Lcy06g019800 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 122/134 (91.04%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++S+RRVL SL  PPSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Lcy06g019800 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MAAIRKAMALASNRRVLPSLLSPPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60
           MAAIRKAMA++S+RRVL SL  PPSRL+SFRGIASKLFVGGLSFYT+DKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFAS+DEAHTALTEMNGK LNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Lcy06g019800 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKPLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of Lcy06g019800 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFRGG 121
            ED A+ A+ EM+GK LNGR I V+ A      P S+F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

[Close]

BLAST of Lcy06g019800 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHTALTEMNGKPLNGRVIFVDYA-----KPTSNFRGG 121
            ED A+ A+ EM+GK LNGR I V+ A      P S+F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

[Close]

BLAST of Lcy06g019800 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 33  IASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTA 92
           I+++LFV  LS YTTD+ L + FS +GQ+ EA+++ D  + + KGFGF+TF SED+A  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 93  LTEMNGKPLNGRVIFVDYAKPTSNFRGGI 122
           L  ++GK ++GR+IFV+ AK     R GI
Sbjct: 65  LKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93

[Close]

BLAST of Lcy06g019800 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 25  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R +++KLF+GGLS+ T D  L +AF+ +G VV+AKV++DR + +S+GFGFV F 
Sbjct: 25  SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84

Query: 85  SEDEAHTALTEMNGKPLNGRVIFVDYA--KPTSNFRGG 121
            E  A  A++EM+GK LNGR I V+ A  +P+  + GG
Sbjct: 85  DEGAATAAISEMDGKELNGRHIRVNPANDRPSGGYGGG 122

The following BLAST results are available for this feature:

BLAST of Lcy06g019800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	2.4e-34	72.28	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	4.4e-20	51.49	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	2.8e-19	52.08	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q8L440	3.1e-18	53.01	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
P60826	5.3e-18	50.00	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of Lcy06g019800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYF3	2.1e-62	92.54	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F5P0	6.9e-61	91.04	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7TKK4	2.5e-58	87.31	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LE31	2.5e-58	87.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]
A0A1S3B7I3	2.5e-58	87.31	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]

BLAST of Lcy06g019800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005174.1	4.4e-62	92.54	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_038903502.1	8.4e-61	92.54	small RNA-binding protein 11, chloroplastic [Benincasa hispida]	[more]
XP_023538908.1	1.4e-60	91.04	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933740.1	1.4e-60	91.04	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
KAG7028125.1	1.4e-60	90.30	Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Lcy06g019800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	1.7e-35	72.28	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	3.1e-21	51.49	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	3.1e-21	51.49	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	1.7e-19	48.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.4	1.7e-19	48.98	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 2.6E-28 score: 110.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 6.9E-22 score: 77.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 20.951591
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..131 e-value: 2.4E-30 score: 107.5
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..133
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g019800.1	Lcy06g019800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding