Lcy06g019560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g019560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Early nodulin-20-like
Location	Chr06: 44197369 .. 44197884 (+)
RNA-Seq Expression	Lcy06g019560
Synteny	Lcy06g019560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGAGCTCCGCTCTAAAACCAGACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCACGGTGCCCGTCGTCGTGCCATCTAAACTGAACCTTTTAGCCGCCGCCGCCACCAAGTCCTCCGGCGGCGCAGCAGCATCGCCGCCGTTACCGTTGGCTTTCGAGCTCGTCCCTATTAAATCCTCCTCCTCCTCCTCATCCCCTTCCCTTGCCTACACTTCCCTCAGAGACATTTTGCCATCTGCCACCGCCATCGGCTCCCCCACCGCCGCCTCTGCTGTAAATTCCGGCTACGAGATCTCGATCCGAAACCGCCTCGTGAAGCAGGCGGCGTGGGCGTATCTTCAGCCCATGTCCTCCTCGCCGGGCTCCTCCGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTCAGCTTCCTCAACCTGCGCATAATTTCCAGTATAACAAAGGCTTTTGATCGGATATTTCGCGTTGTGGGGATCAGTTTTGTCTATTGA

mRNA sequence

ATGGATGAGAGCTCCGCTCTAAAACCAGACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCACGGTGCCCGTCGTCGTGCCATCTAAACTGAACCTTTTAGCCGCCGCCGCCACCAAGTCCTCCGGCGGCGCAGCAGCATCGCCGCCGTTACCGTTGGCTTTCGAGCTCGTCCCTATTAAATCCTCCTCCTCCTCCTCATCCCCTTCCCTTGCCTACACTTCCCTCAGAGACATTTTGCCATCTGCCACCGCCATCGGCTCCCCCACCGCCGCCTCTGCTGTAAATTCCGGCTACGAGATCTCGATCCGAAACCGCCTCGTGAAGCAGGCGGCGTGGGCGTATCTTCAGCCCATGTCCTCCTCGCCGGGCTCCTCCGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTCAGCTTCCTCAACCTGCGCATAATTTCCAGTATAACAAAGGCTTTTGATCGGATATTTCGCGTTGTGGGGATCAGTTTTGTCTATTGA

Coding sequence (CDS)

ATGGATGAGAGCTCCGCTCTAAAACCAGACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCACGGTGCCCGTCGTCGTGCCATCTAAACTGAACCTTTTAGCCGCCGCCGCCACCAAGTCCTCCGGCGGCGCAGCAGCATCGCCGCCGTTACCGTTGGCTTTCGAGCTCGTCCCTATTAAATCCTCCTCCTCCTCCTCATCCCCTTCCCTTGCCTACACTTCCCTCAGAGACATTTTGCCATCTGCCACCGCCATCGGCTCCCCCACCGCCGCCTCTGCTGTAAATTCCGGCTACGAGATCTCGATCCGAAACCGCCTCGTGAAGCAGGCGGCGTGGGCGTATCTTCAGCCCATGTCCTCCTCGCCGGGCTCCTCCGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTCAGCTTCCTCAACCTGCGCATAATTTCCAGTATAACAAAGGCTTTTGATCGGATATTTCGCGTTGTGGGGATCAGTTTTGTCTATTGA

Protein sequence

MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVPIKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFVY

Homology

[Close]

BLAST of Lcy06g019560 vs. ExPASy TrEMBL
Match: A0A5A7TKK1 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004370 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 153/170 (90.00%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MDE+SALKPDPP  NLRRRNSITVPV VPSKLNLL  AATK S GA ASPPLPLAFELVP
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLL--AATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSSS SSPSLAYTSLRDILPS TA  SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           SSSPGSSGPHLLRRIWLRFSACLSFLNL IISSIT AFDRIFRVVGI+FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]

BLAST of Lcy06g019560 vs. ExPASy TrEMBL
Match: A0A1S3B6B1 (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 153/170 (90.00%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MDE+SALKPDPP  NLRRRNSITVPV VPSKLNLL  AATK S GA ASPPLPLAFELVP
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLL--AATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSSS SSPSLAYTSLRDILPS TA  SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           SSSPGSSGPHLLRRIWLRFSACLSFLNL IISSIT AFDRIFRVVGI+FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]

BLAST of Lcy06g019560 vs. ExPASy TrEMBL
Match: A0A0A0LE45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.4e-68
Identity = 149/170 (87.65%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPD P  NLRRRNSITVPV VPSKLNLL  AATKSS GA ASP LPLAFELVP
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLL--AATKSSRGAEASPRLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSSS SSPSLAYTSL+DILPS TA  SPTA SA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           SSSPGSSGPHLLRRIWLRFSACLSFLNL IISSIT AFDRIFRVVGI+FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]

BLAST of Lcy06g019560 vs. ExPASy TrEMBL
Match: A0A6J1J4V9 (uncharacterized protein LOC111481768 OS=Cucurbita maxima OX=3661 GN=LOC111481768 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPDPP PNLRRRNSITVPVVV SKLNLL  AATKSS G A+SPPLPLAFELVP
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVSSKLNLL--AATKSSRGVASSPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IK  SSSSSPSLAYTSLRDILPSATAI SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IK--SSSSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           +SSP SSGPHLL RIWLRFSA LSF+NL IISSIT AF+RIFRVVG+SFV
Sbjct: 121 ASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSITNAFNRIFRVVGVSFV 166

[Close]

BLAST of Lcy06g019560 vs. ExPASy TrEMBL
Match: A0A6J1F639 (uncharacterized protein LOC111442465 OS=Cucurbita moschata OX=3662 GN=LOC111442465 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.0e-66
Identity = 146/170 (85.88%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPDPP PNLRRRNSITVPVVVPSKL+LL  AATKSS G A+SP LPLAFELVP
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLSLL--AATKSSRGVASSPQLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IK  SSSSSPSLAYTSLRDILPSATAI SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IK--SSSSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           +SSP SSGPHLL RIWLRFSA LSF+NL IISS+T AF+RIFRVVG+SFV
Sbjct: 121 ASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRVVGVSFV 166

[Close]

BLAST of Lcy06g019560 vs. NCBI nr
Match: XP_008442897.1 (PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo] >KAA0043832.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa] >TYK25301.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.6e-70
Identity = 153/170 (90.00%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MDE+SALKPDPP  NLRRRNSITVPV VPSKLNLL  AATK S GA ASPPLPLAFELVP
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLL--AATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSSS SSPSLAYTSLRDILPS TA  SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           SSSPGSSGPHLLRRIWLRFSACLSFLNL IISSIT AFDRIFRVVGI+FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]

BLAST of Lcy06g019560 vs. NCBI nr
Match: XP_011652026.1 (uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hypothetical protein Csa_001918 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 149/170 (87.65%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPD P  NLRRRNSITVPV VPSKLNLL  AATKSS GA ASP LPLAFELVP
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLL--AATKSSRGAEASPRLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSSS SSPSLAYTSL+DILPS TA  SPTA SA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           SSSPGSSGPHLLRRIWLRFSACLSFLNL IISSIT AFDRIFRVVGI+FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]

BLAST of Lcy06g019560 vs. NCBI nr
Match: XP_023526406.1 (uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 5.8e-67
Identity = 148/170 (87.06%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPDPP PNLRRRNSITVPVVVPSKLNLL  AATKSS G A+SPPLPLAFELVP
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLNLL--AATKSSRGVASSPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IK SSS SSPSLAYTSLRDILPSATAI SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IK-SSSPSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           +SSP SSGPHLL RIWLRFSA LSF+NL IISS+T AF+RIFRVVG+SFV
Sbjct: 121 ASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRVVGVSFV 167

[Close]

BLAST of Lcy06g019560 vs. NCBI nr
Match: XP_022983125.1 (uncharacterized protein LOC111481768 [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 2.9e-66
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD++SALKPDPP PNLRRRNSITVPVVV SKLNLL  AATKSS G A+SPPLPLAFELVP
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVSSKLNLL--AATKSSRGVASSPPLPLAFELVP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IK  SSSSSPSLAYTSLRDILPSATAI SPTAASA NSGYEISIRNRLVKQAAWAYLQPM
Sbjct: 61  IK--SSSSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFV 171
           +SSP SSGPHLL RIWLRFSA LSF+NL IISSIT AF+RIFRVVG+SFV
Sbjct: 121 ASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSITNAFNRIFRVVGVSFV 166

[Close]

BLAST of Lcy06g019560 vs. NCBI nr
Match: XP_023539526.1 (uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-66
Identity = 144/171 (84.21%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 1   MDESSALKPDPPPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVP 60
           MD+ SALKP PPPPNLRRRNSI VPVVVPSKLNL A AATKSSGG+AASP  PLAFEL P
Sbjct: 1   MDDISALKPHPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60

Query: 61  IKSSSSSSSPSLAYTSLRDILPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQPM 120
           IKSSS     SL YTSLRDILPS+T++ SPTAASA NSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSH----SLTYTSLRDILPSSTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFRVVGISFVY 172
           SSSPGSSGPHLLRRIWLRFSACL FLNL IISS+TKA DRIFRVVG SFVY
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY 165

[Close]

BLAST of Lcy06g019560 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 61/164 (37.20%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 12  PPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVPIKSSSSSSSPS 71
           P   LRR  SI+         N+      +     A++PP    +EL+ +K SS      
Sbjct: 9   PATQLRRTKSIS---------NMTTLTPPEVPFDIASTPPSSFDYELISVKPSS-----F 68

Query: 72  LAYTSLRDI----------LPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQP-- 131
           +AYTSLRDI          LPS     SP  ++A     +ISIRNRLVKQAA +YLQP  
Sbjct: 69  VAYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTV 128

Query: 132 MSSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFR 164
           ++SS  S+G    RR+WL  SA   FL         + FD IF+
Sbjct: 129 LTSSDDSAGSQFFRRVWLHLSAGFQFLR--------RVFDWIFQ 147

[Close]

BLAST of Lcy06g019560 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 61/164 (37.20%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 12  PPPNLRRRNSITVPVVVPSKLNLLAAAATKSSGGAAASPPLPLAFELVPIKSSSSSSSPS 71
           P   LRR  SI+         N+      +     A++PP    +EL+ +K SS      
Sbjct: 9   PATQLRRTKSIS---------NMTTLTPPEVPFDIASTPPSSFDYELISVKPSS-----F 68

Query: 72  LAYTSLRDI----------LPSATAIGSPTAASAVNSGYEISIRNRLVKQAAWAYLQP-- 131
           +AYTSLRDI          LPS     SP  ++A     +ISIRNRLVKQAA +YLQP  
Sbjct: 69  VAYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTV 128

Query: 132 MSSSPGSSGPHLLRRIWLRFSACLSFLNLRIISSITKAFDRIFR 164
           ++SS  S+G    RR+WL  SA   FL         + FD IF+
Sbjct: 129 LTSSDDSAGSQFFRRVWLHLSAGFQFLR--------RVFDWIFQ 147

[Close]

BLAST of Lcy06g019560 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-11
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 33  NLLAAAATKSSGGAAASPPLPLAFELVPIKSSSSSSSPSLAYTSLRDILP-SATAIGSPT 92
           NL+  +  +   GA +     L  ELV +  SS    P   YTSL+DILP S+T + SP 
Sbjct: 5   NLMNLSLLQRRNGAVSQ---TLDLELVSVNKSSEDPLP--CYTSLKDILPSSSTTVDSPA 64

Query: 93  AASAVN---SGYEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLSFLNL 152
            + AV    SG  I+IRNRLVKQAA +YLQP + +P SS P  LRR+   F        +
Sbjct: 65  ISFAVASAVSGPTITIRNRLVKQAACSYLQPSTPTP-SSNPSFLRRVSSSF--------I 124

Query: 153 RIISSITKAFDRIF 163
           R++S+   A  RIF
Sbjct: 125 RLVSAFFDALLRIF 124

The following BLAST results are available for this feature:

BLAST of Lcy06g019560 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g019560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKK1	2.7e-70	90.00	Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B6B1	2.7e-70	90.00	uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=...	[more]
A0A0A0LE45	7.4e-68	87.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1	[more]
A0A6J1J4V9	1.4e-66	87.06	uncharacterized protein LOC111481768 OS=Cucurbita maxima OX=3661 GN=LOC111481768...	[more]
A0A6J1F639	7.0e-66	85.88	uncharacterized protein LOC111442465 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]

BLAST of Lcy06g019560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442897.1	5.6e-70	90.00	PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo] >KAA0043832.1 put...	[more]
XP_011652026.1	1.5e-67	87.65	uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hypothetical ...	[more]
XP_023526406.1	5.8e-67	87.06	uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo]	[more]
XP_022983125.1	2.9e-66	87.06	uncharacterized protein LOC111481768 [Cucurbita maxima]	[more]
XP_023539526.1	3.8e-66	84.21	uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy06g019560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06280.1	2.6e-12	37.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G06280.3	2.6e-12	37.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52520.1	6.3e-11	41.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR34569:SF2	EXPRESSED PROTEIN	coord: 8..161
None	No IPR available	PANTHER	PTHR34569	EXPRESSED PROTEIN	coord: 8..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g019560.1	Lcy06g019560.1	mRNA