Lcy06g019380 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g019380
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUbiquitin
LocationChr06: 43997934 .. 43998741 (+)
RNA-Seq ExpressionLcy06g019380
SyntenyLcy06g019380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCCCCGTCTTCGCCGATATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACTCTCGAGGTCGAGAGCTCCGATACGATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGAACTCTAGCCGATTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTGAGGCTTCGTGGAGGAGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCTGTGCTTCAGTTCTACAAGGTCGACGATTCCGGAAAGGTCCAGAGGCTAAGAAAAGAGTGTCCTAATGCGGAGTGCGGAGCCGGTACTTTCATGGCCAATCACTTTGATCGTCATTATTGTGGCAAGTGTGGCTTAACTTATGTCTACCAGAAACCTGGTAGTGATTAGGTCTACTATATTGATAGAAAATTGGTGATTAGAATAGCACATTTGAAGACGCGTCTTGAATTTTCTTAGTTTTGTTGCCATGGTTGAGATTCTTATAATTTCATATTGGTTGACAGTTTTGTTTTGCGTCTATTTTTTGATTGTTATTGCTGGATATACGTTATGCACTTTCGTAATCTCGAAATAAGTAGAGTTAATATATCATGGAATTCATATGGCTAGTGATCCTCTTTCCTAGGATTTAGAATTATCTTTTTCTCCTTTGAATCAGTCATTTGAGAATTGAGAGGACCTCTTACTACTGAAAGTAGAAAAT

mRNA sequence

CTCTTCCCCGTCTTCGCCGATATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACTCTCGAGGTCGAGAGCTCCGATACGATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGAACTCTAGCCGATTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTGAGGCTTCGTGGAGGAGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCTGTGCTTCAGTTCTACAAGGTCGACGATTCCGGAAAGGTCCAGAGGCTAAGAAAAGAGTGTCCTAATGCGGAGTGCGGAGCCGGTACTTTCATGGCCAATCACTTTGATCGTCATTATTGTGGCAAGTGTGGCTTAACTTATGTCTACCAGAAACCTGGTAGTGATTAGGTCTACTATATTGATAGAAAATTGGTGATTAGAATAGCACATTTGAAGACGCGTCTTGAATTTTCTTAGTTTTGTTGCCATGGTTGAGATTCTTATAATTTCATATTGGTTGACAGTTTTGTTTTGCGTCTATTTTTTGATTGTTATTGCTGGATATACGTTATGCACTTTCGTAATCTCGAAATAAGTAGAGTTAATATATCATGGAATTCATATGGCTAGTGATCCTCTTTCCTAGGATTTAGAATTATCTTTTTCTCCTTTGAATCAGTCATTTGAGAATTGAGAGGACCTCTTACTACTGAAAGTAGAAAAT

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACTCTCGAGGTCGAGAGCTCCGATACGATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGAACTCTAGCCGATTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTGAGGCTTCGTGGAGGAGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCTGTGCTTCAGTTCTACAAGGTCGACGATTCCGGAAAGGTCCAGAGGCTAAGAAAAGAGTGTCCTAATGCGGAGTGCGGAGCCGGTACTTTCATGGCCAATCACTTTGATCGTCATTATTGTGGCAAGTGTGGCTTAACTTATGTCTACCAGAAACCTGGTAGTGATTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD
Homology
[Close]
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match: P62980 (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY K G D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match: P62981 (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY K G D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match: P47905 (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2)

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-79
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 153
           CPN ECGAGTFMANHFDRHYCGKCG TYVYQK
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCGKTYVYQK 152

[Close]
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 295.4 bits (755), Expect = 3.7e-79
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGS 156
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G+
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEGA 155

[Close]
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match: P59233 (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27AC PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 8.2e-79
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match: A0A6J1HAY0 (Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111462355 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.0e-81
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match: A0A0A0LQL6 (Ubiquitin OS=Cucumis sativus OX=3659 GN=Csa_2G348875 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match: A0A6J1BRE2 (Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005022 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match: A0A6J1BV75 (Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005021 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.0e-80
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 66  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 125

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGG+KKRKKKTYTKPKKIKHKKKKVKLAVLQFYK+DDSGKVQRLRKE
Sbjct: 126 IQKESTLHLVLRLRGGSKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKIDDSGKVQRLRKE 185

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 186 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 221

[Close]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match: V4RT13 (Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10029476mg PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.0e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK GSD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGSD 156

[Close]
BLAST of Lcy06g019380 vs. NCBI nr
Match: XP_022961646.1 (ubiquitin-40S ribosomal protein S27a-like [Cucurbita moschata] >XP_023547140.1 ubiquitin-40S ribosomal protein S27a-like [Cucurbita pepo subsp. pepo] >KAG6598224.1 Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. NCBI nr
Match: XP_004142977.1 (ubiquitin-40S ribosomal protein S27a [Cucumis sativus] >XP_022132060.1 ubiquitin-40S ribosomal protein S27a-like [Momordica charantia] >XP_038884166.1 ubiquitin-40S ribosomal protein S27a-like [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 3.2e-80
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. NCBI nr
Match: XP_022132058.1 (ubiquitin-40S ribosomal protein S27a-like [Momordica charantia])

HSP 1 Score: 308.1 bits (788), Expect = 4.2e-80
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 66  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 125

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGG+KKRKKKTYTKPKKIKHKKKKVKLAVLQFYK+DDSGKVQRLRKE
Sbjct: 126 IQKESTLHLVLRLRGGSKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKIDDSGKVQRLRKE 185

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 186 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 221

[Close]
BLAST of Lcy06g019380 vs. NCBI nr
Match: XP_006424488.1 (ubiquitin-40S ribosomal protein S27a [Citrus clementina] >ESR37728.1 hypothetical protein CICLE_v10029476mg [Citrus clementina])

HSP 1 Score: 308.1 bits (788), Expect = 4.2e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK GSD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGSD 156

[Close]
BLAST of Lcy06g019380 vs. NCBI nr
Match: XP_022997484.1 (ubiquitin-40S ribosomal protein S27a-like [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 9.4e-80
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP QQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPGQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGSD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG D
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of Lcy06g019380 vs. TAIR 10
Match: AT2G47110.1 (ubiquitin 6 )

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-80
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGS 156
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G+
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEGA 155

[Close]
BLAST of Lcy06g019380 vs. TAIR 10
Match: AT2G47110.2 (ubiquitin 6 )

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-80
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGS 156
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G+
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEGA 155

[Close]
BLAST of Lcy06g019380 vs. TAIR 10
Match: AT3G62250.1 (ubiquitin 5 )

HSP 1 Score: 294.3 bits (752), Expect = 5.9e-80
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy06g019380 vs. TAIR 10
Match: AT1G23410.1 (Ribosomal protein S27a / Ubiquitin family protein )

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-75
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH  KKVKLAVLQFYKVD SGKVQRL+KE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 153
           CP+  CG GTFMA+HFDRHYCGKCG TYV++K
Sbjct: 121 CPSVSCGPGTFMASHFDRHYCGKCGTTYVFKK 152

[Close]
BLAST of Lcy06g019380 vs. TAIR 10
Match: AT5G03240.1 (polyubiquitin 3 )

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305

The following BLAST results are available for this feature:
BLAST of Lcy06g019380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P629801.4e-8197.44Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=... [more]
P629811.4e-8197.44Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 S... [more]
P479052.8e-7998.03Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2[more]
P592323.7e-7996.13Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
P592338.2e-7996.10Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
BLAST of Lcy06g019380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HAY07.0e-8199.36Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111462355 PE=3 SV=1[more]
A0A0A0LQL61.6e-8098.72Ubiquitin OS=Cucumis sativus OX=3659 GN=Csa_2G348875 PE=3 SV=1[more]
A0A6J1BRE21.6e-8098.72Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005022 PE=3 SV=1[more]
A0A6J1BV752.0e-8098.08Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005021 PE=3 SV=1[more]
V4RT132.0e-8099.36Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10029476mg PE=3 SV=1[more]
BLAST of Lcy06g019380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961646.11.4e-8099.36ubiquitin-40S ribosomal protein S27a-like [Cucurbita moschata] >XP_023547140.1 u... [more]
XP_004142977.13.2e-8098.72ubiquitin-40S ribosomal protein S27a [Cucumis sativus] >XP_022132060.1 ubiquitin... [more]
XP_022132058.14.2e-8098.08ubiquitin-40S ribosomal protein S27a-like [Momordica charantia][more]
XP_006424488.14.2e-8099.36ubiquitin-40S ribosomal protein S27a [Citrus clementina] >ESR37728.1 hypothetica... [more]
XP_022997484.19.4e-8098.72ubiquitin-40S ribosomal protein S27a-like [Cucurbita maxima][more]
BLAST of Lcy06g019380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47110.12.6e-8096.13ubiquitin 6 [more]
AT2G47110.22.6e-8096.13ubiquitin 6 [more]
AT3G62250.15.9e-8096.10ubiquitin 5 [more]
AT1G23410.11.9e-7592.11Ribosomal protein S27a / Ubiquitin family protein [more]
AT5G03240.11.8e-3698.70polyubiquitin 3 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 11..31
score: 85.2
coord: 53..74
score: 91.18
coord: 32..52
score: 95.05
IPR002906Ribosomal protein S27aSMARTSM01402Ribosomal_S27_2coord: 102..147
e-value: 3.1E-28
score: 109.8
IPR002906Ribosomal protein S27aPFAMPF01599Ribosomal_S27coord: 102..147
e-value: 1.7E-26
score: 91.9
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 1..72
e-value: 3.0E-35
score: 133.1
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..74
e-value: 6.0E-34
score: 115.6
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 30.452106
IPR038582S27a-like superfamilyGENE3D6.20.50.150coord: 81..155
e-value: 2.5E-40
score: 138.7
NoneNo IPR availableGENE3D3.10.20.90coord: 1..80
e-value: 5.6E-46
score: 156.3
NoneNo IPR availablePANTHERPTHR10666:SF363UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1coord: 1..146
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..146
NoneNo IPR availableCDDcd01803Ubl_ubiquitincoord: 1..76
e-value: 8.10544E-55
score: 165.31
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..93
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 100..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g019380.1Lcy06g019380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019941 modification-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0031386 protein tag
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding