Lcy06g017740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr06: 40851710 .. 40852613 (+)
RNA-Seq Expression	Lcy06g017740
Synteny	Lcy06g017740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCAGCTGGCCAGCGGAGGTCGGCAGCGTTCGGTAGTCGGAGGTTGACTGGGCAGTTGGTCCGAGAAGGCAGGTCAGTAGAGGTCGGCGGCAGACGGTAGTCAGAGGTCGACGGTGGTGGCTGGTCGACGGCAGTCGGTAGTCAGATGTCAACGGTGGTGATTGATCGACGGAGGGCGATCAGCGGAGGTGGTAAAAAAAATAGAGAGAGGAAGAGAGAGATGGGTGTAGGAATGGGAGAGAGAGATGGATACATGCATGAAAGATAGAAAAAAAAAAACAAAAACATAATTTGAGAAACAATTTTTTTGTAGTTTCTCAAATTTTGCCTCTTTTCTAGAAACGTTTCTAGAAATTTAGAAACAAGAAACAGGTATGAGTTATCAAACATGTTTGTTTCTTAAAAAAAATGAGCAATGGGAACAAAAAACAGGAAACGAGAACGTTATCAAATGAGCCCTACATAAATTAAAAAAAAATTGATACAGTAAATCATCAACTATTTTACACTAAATCTGTGATATAGCTTTACAGGAAGTATATCACTAATATACGTGACTCCTCCGGATTGAGGCGAGCAGAAAAGGGGGATTGGGTTGGTTAATTCGTGACTCCTCTGGATCTTTGCTAGGAGCGGGCTGCATCCAAATTGACAAGAAGTGGTCGATCAAGGTTATGGAAGCTCAAGCGGTGCTTGAAGGTTTAAAGGCCTACCTTTCGATGGCCGTAAGAGAAGATGAGGGGGCCAGACGCCCCCTTATGGTCGAGACTGATTCTGCCTGTGTTGTGAATGCAATCAAGGACAGGAATGATGATTTGTCGGAGGTGGCGATGATCGTGGACGCCATCGACGAGATTTCCAAAGGAGAAGTCATCTCCTTTGGCTTCTGCAGAAGATAG

mRNA sequence

ATGGTGGCAGCTGGCCAGCGGAGGTCGGCAGCGTTCGGTAGTCGGAGGTTGACTGGGCAGTTGGTCCGAGAAGGCAGAAAAGGGGGATTGGGTTGGTTAATTCGTGACTCCTCTGGATCTTTGCTAGGAGCGGGCTGCATCCAAATTGACAAGAAGTGGTCGATCAAGGTTATGGAAGCTCAAGCGGTGCTTGAAGGTTTAAAGGCCTACCTTTCGATGGCCGTAAGAGAAGATGAGGGGGCCAGACGCCCCCTTATGGTCGAGACTGATTCTGCCTGTGTTGTGAATGCAATCAAGGACAGGAATGATGATTTGTCGGAGGTGGCGATGATCGTGGACGCCATCGACGAGATTTCCAAAGGAGAAGTCATCTCCTTTGGCTTCTGCAGAAGATAG

Coding sequence (CDS)

ATGGTGGCAGCTGGCCAGCGGAGGTCGGCAGCGTTCGGTAGTCGGAGGTTGACTGGGCAGTTGGTCCGAGAAGGCAGAAAAGGGGGATTGGGTTGGTTAATTCGTGACTCCTCTGGATCTTTGCTAGGAGCGGGCTGCATCCAAATTGACAAGAAGTGGTCGATCAAGGTTATGGAAGCTCAAGCGGTGCTTGAAGGTTTAAAGGCCTACCTTTCGATGGCCGTAAGAGAAGATGAGGGGGCCAGACGCCCCCTTATGGTCGAGACTGATTCTGCCTGTGTTGTGAATGCAATCAAGGACAGGAATGATGATTTGTCGGAGGTGGCGATGATCGTGGACGCCATCGACGAGATTTCCAAAGGAGAAGTCATCTCCTTTGGCTTCTGCAGAAGATAG

Protein sequence

MVAAGQRRSAAFGSRRLTGQLVREGRKGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLMVETDSACVVNAIKDRNDDLSEVAMIVDAIDEISKGEVISFGFCRR

Homology

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BLAST of Lcy06g017740 vs. ExPASy TrEMBL
Match: Q2R147 (Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g40380 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           KGG+G ++RD+SGS + A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 349 KGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 408

Query: 87  VETDSACVVNAIKDRNDDLSEVAMIVDAIDEI 119
           +ETD   +VN +K+ N DLSE+A +V  I  +
Sbjct: 409 IETDCVSLVNLLKEGNRDLSELANLVQEIKRL 433

[Close]

BLAST of Lcy06g017740 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 33/101 (32.67%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           +GG+GW+IR   G ++ AG   ++   ++K++EA A+LEGL+   ++      G  RPL 
Sbjct: 93  RGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNL------GVLRPLH 152

Query: 87  VETDSACVVNAIKDRNDDLSEVAMIVDAIDEISKG-EVISF 127
           +ETDSA V + +  + +DL++   +V+ I  +    E+++F
Sbjct: 153 IETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 187

[Close]

BLAST of Lcy06g017740 vs. ExPASy TrEMBL
Match: I1Q6R4 (RNase H domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           KGG+  ++RD+SGS++ A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 23  KGGIVMILRDNSGSIVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 82

Query: 87  VETDSACVVNAIKDRNDDLSEVA 110
           +ETD   +VN +K+ N DLSE+A
Sbjct: 83  IETDCVSLVNLLKEGNRDLSELA 98

[Close]

BLAST of Lcy06g017740 vs. ExPASy TrEMBL
Match: B8BNT6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37162 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 27   KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
            KGG+  ++RD+SGS + A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 1203 KGGISMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 1262

Query: 87   VETDSACVVNAIKDRNDDLSEVAM 111
            +ETD   +VN +K+ N DLSEV +
Sbjct: 1263 IETDCVSLVNLLKEGNRDLSEVVI 1279

[Close]

BLAST of Lcy06g017740 vs. ExPASy TrEMBL
Match: C7J8D0 (Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 27   KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
            KGG+  ++RD+SGS + A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 1610 KGGISMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 1669

Query: 87   VETDSACVVNAIKDRNDDLSEVAM 111
            +ETD   +VN +K+ N DLSEV +
Sbjct: 1670 IETDCVSLVNLLKEGNRDLSEVVI 1686

[Close]

BLAST of Lcy06g017740 vs. NCBI nr
Match: ABA94760.1 (Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           KGG+G ++RD+SGS + A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 349 KGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 408

Query: 87  VETDSACVVNAIKDRNDDLSEVAMIVDAIDEI 119
           +ETD   +VN +K+ N DLSE+A +V  I  +
Sbjct: 409 IETDCVSLVNLLKEGNRDLSELANLVQEIKRL 433

[Close]

BLAST of Lcy06g017740 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           KGG+G ++RD+SGS + A C  +D   +    E +A +EGL   L   +       RP++
Sbjct: 345 KGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGLILALQWTM-------RPIL 404

Query: 87  VETDSACVVNAIKDRNDDLSEVAMIVDAIDEI 119
           +ETD   +VN +K+ N DLSE+A +V  I  +
Sbjct: 405 IETDCVSLVNLLKEGNRDLSELANLVQEIKRL 429

[Close]

BLAST of Lcy06g017740 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 29  GLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLMVE 88
           GLG ++RD  G ++  G  QI   W +++ EA+A+  GL+    + VR+       L+VE
Sbjct: 178 GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAKAIEWGLRVAAGLGVRD-------LVVE 237

Query: 89  TDSACVVNAIKDRNDDLSEVAMIVDAI 116
           +D   V+ A+K++  DLSE+++I+D I
Sbjct: 238 SDCLQVIQALKNKTADLSELSLIIDDI 257

[Close]

BLAST of Lcy06g017740 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 33/101 (32.67%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 27  KGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARRPLM 86
           +GG+GW+IR   G ++ AG   ++   ++K++EA A+LEGL+   ++      G  RPL 
Sbjct: 93  RGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNL------GVLRPLH 152

Query: 87  VETDSACVVNAIKDRNDDLSEVAMIVDAIDEISKG-EVISF 127
           +ETDSA V + +  + +DL++   +V+ I  +    E+++F
Sbjct: 153 IETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 187

[Close]

BLAST of Lcy06g017740 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 24  EGRKGGLGWLIRDSSGSLLGAGCIQIDKKWSIKVMEAQAVLEGLKAYLSMAVREDEGARR 83
           E  KGG+ W+I DS GS +   C ++ +KW +K++E +A++EGLK YL   +RE      
Sbjct: 17  EAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYL--LIRETVSYSH 76

Query: 84  PLMVETDSACVVNAIKDRNDDLSEVAMIVDAIDEIS-KGEVISF 127
             ++  + A ++N   + + DL E++ +VD I ++     +ISF
Sbjct: 77  RPIIFLELARILN---NTHMDLIELSNVVDEIFDLELLAGIISF 115

The following BLAST results are available for this feature:

BLAST of Lcy06g017740 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g017740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q2R147	8.1e-06	36.96	Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japon...	[more]
A0A6J1DNV9	1.4e-05	32.67	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
I1Q6R4	2.6e-04	37.35	RNase H domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1	[more]
B8BNT6	2.6e-04	36.90	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37162 PE=4...	[more]
C7J8D0	2.6e-04	36.90	Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE...	[more]

BLAST of Lcy06g017740 vs. NCBI nr


Match Name	E-value	Identity	Description
ABA94760.1	1.7e-05	36.96	Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group...	[more]
XP_025877173.1	1.7e-05	36.96	uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X...	[more]
XP_021753633.1	2.2e-05	35.63	uncharacterized protein LOC110719026 [Chenopodium quinoa]	[more]
XP_022155262.1	2.9e-05	32.67	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
KAG6599977.1	1.4e-04	33.65	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy06g017740 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 20..131 e-value: 4.6E-15 score: 55.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 17..131 e-value: 6.5E-8 score: 34.7
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 22..131 e-value: 2.29797E-9 score: 49.62
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 23..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017740.1	Lcy06g017740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity