Lcy06g017650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr06: 40635425 .. 40635811 (-)
RNA-Seq Expression	Lcy06g017650
Synteny	Lcy06g017650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTGGAGCACCTTAAGTCCTCATTTCCTTCCTGGTGGAATGTGGAGGCCTCAGGTAAGTGGGAAGGCTACAGGCTTATGGGTAAGTTAAGGTTTCTCAGAAGTACCCTTAAATCGTGGAATAAAGAGGTCTTTGGGGACATTAGAGTGAAGAAGCAAGAAGTGTTAAATAGGATTAAAGAGATTGATACTCTGGAAGAGGATGGTCCGTTGGATGAGAACCTCAAGGGAGAGCGCCTCTCCCTCAAAATTGAGTTCGCTAACTTGATCAAGAAAGAGACTATCAGTTGGAGGCAAAAGGCCAAGGTTAAATGGGCCAAGGACAACGATTGTAATTTGGCCTTTTTTCATAGATTGGCTATGGCAGAAGAAGCAAGAACATGA

mRNA sequence

ATGTGGTTGGAGCACCTTAAGTCCTCATTTCCTTCCTGGTGGAATGTGGAGGCCTCAGGTAAGTGGGAAGGCTACAGGCTTATGGGTAAGTTAAGGTTTCTCAGAAGTACCCTTAAATCGTGGAATAAAGAGGTCTTTGGGGACATTAGAGTGAAGAAGCAAGAAGTGTTAAATAGGATTAAAGAGATTGATACTCTGGAAGAGGATGGTCCGTTGGATGAGAACCTCAAGGGAGAGCGCCTCTCCCTCAAAATTGAGTTCGCTAACTTGATCAAGAAAGAGACTATCAGTTGGAGGCAAAAGGCCAAGGTTAAATGGGCCAAGGACAACGATTGTAATTTGGCCTTTTTTCATAGATTGGCTATGGCAGAAGAAGCAAGAACATGA

Coding sequence (CDS)

ATGTGGTTGGAGCACCTTAAGTCCTCATTTCCTTCCTGGTGGAATGTGGAGGCCTCAGGTAAGTGGGAAGGCTACAGGCTTATGGGTAAGTTAAGGTTTCTCAGAAGTACCCTTAAATCGTGGAATAAAGAGGTCTTTGGGGACATTAGAGTGAAGAAGCAAGAAGTGTTAAATAGGATTAAAGAGATTGATACTCTGGAAGAGGATGGTCCGTTGGATGAGAACCTCAAGGGAGAGCGCCTCTCCCTCAAAATTGAGTTCGCTAACTTGATCAAGAAAGAGACTATCAGTTGGAGGCAAAAGGCCAAGGTTAAATGGGCCAAGGACAACGATTGTAATTTGGCCTTTTTTCATAGATTGGCTATGGCAGAAGAAGCAAGAACATGA

Protein sequence

MWLEHLKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLNRIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFHRLAMAEEART

Homology

[Close]

BLAST of Lcy06g017650 vs. ExPASy TrEMBL
Match: A0A5A7UQK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00550 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.6e-30
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWLEH   K++F SWW++   G+W GY  M KLR L+  L+ WN EVFGDI+VK +E++ 
Sbjct: 1   MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
           RI++ID  E D P D +LKGER  LK +F  +IK E ISW +KAKVKWAK   C+  FF+
Sbjct: 61  RIEKIDAFELDVPSDGSLKGERDCLKEDFTEVIKNENISWNKKAKVKWAKVGACSTGFFY 120

Query: 121 RLA 122
           R A
Sbjct: 121 RAA 123

[Close]

BLAST of Lcy06g017650 vs. ExPASy TrEMBL
Match: A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 20  GKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLNRIKEIDTLEEDGPLDENLKGE 79
           G+W+GYR M KLR L + L+ WN++VFGDI++KK+EV+ RI EID LE +GPLD  LK E
Sbjct: 401 GRWQGYRFMDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEE 460

Query: 80  RLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFHRLA 122
           R+S K + A +I+KE +SW QK+K+KW K+ DCN +FFHR A
Sbjct: 461 RVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAA 502

[Close]

BLAST of Lcy06g017650 vs. ExPASy TrEMBL
Match: A0A438KDP4 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_73 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F SWW       WEG++ M KL+F+++ LK WNK  FG ++ +K+ +L+
Sbjct: 742 MWLQHPSFKKCFSSWWREFDGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKTILD 801

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  NL  +R+  K E   LI +E I WRQKAKVKW KD DCN   FH
Sbjct: 802 EIANIDVIEQEGVLSSNLSAQRVERKGELEELILREEIHWRQKAKVKWVKDGDCNSTLFH 861

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 862 KVANGRQNR 870

[Close]

BLAST of Lcy06g017650 vs. ExPASy TrEMBL
Match: A5C6D8 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_016057 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F +WW      +WEG++ M KL+F+++ LK WNK  FG ++ +K  +L+
Sbjct: 1   MWLQHHSFKECFSNWWREFEGNRWEGHKFMKKLQFVKAKLKDWNKNTFGMLKERKTTILD 60

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  +L  +R+ +K E   LI +E I WRQKAKVKW KD DCN   FH
Sbjct: 61  EIANIDAIEQEGALSSDLAAQRVIIKGELEELILREEIHWRQKAKVKWVKDGDCNSKLFH 120

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 121 KVANGRQNR 129

[Close]

BLAST of Lcy06g017650 vs. ExPASy TrEMBL
Match: A5AP81 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_039150 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F SWW       WEG++ M KL+F+++ LK WNK  FG ++ +K+ +L+
Sbjct: 60  MWLQHPSFKECFSSWWREFDGNGWEGHKFMRKLQFVKAKLKDWNKNSFGTLKERKKSILD 119

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  +L  +R+  K E   LI +E I WRQKAKVKW KD DCN  FFH
Sbjct: 120 EIANIDAIEQEGVLSFDLSAQRVLRKGELEELILREEIHWRQKAKVKWVKDGDCNSKFFH 179

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 180 KVANDRQNR 188

[Close]

BLAST of Lcy06g017650 vs. NCBI nr
Match: KAA0057384.1 (hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK30082.1 hypothetical protein E5676_scaffold216G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 9.5e-30
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWLEH   K++F SWW++   G+W GY  M KLR L+  L+ WN EVFGDI+VK +E++ 
Sbjct: 1   MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
           RI++ID  E D P D +LKGER  LK +F  +IK E ISW +KAKVKWAK   C+  FF+
Sbjct: 61  RIEKIDAFELDVPSDGSLKGERDCLKEDFTEVIKNENISWNKKAKVKWAKVGACSTGFFY 120

Query: 121 RLA 122
           R A
Sbjct: 121 RAA 123

[Close]

BLAST of Lcy06g017650 vs. NCBI nr
Match: TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.4e-27
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 20  GKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLNRIKEIDTLEEDGPLDENLKGE 79
           G+W+GYR M KLR L + L+ WN++VFGDI++KK+EV+ RI EID LE +GPLD  LK E
Sbjct: 401 GRWQGYRFMDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEE 460

Query: 80  RLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFHRLA 122
           R+S K + A +I+KE +SW QK+K+KW K+ DCN +FFHR A
Sbjct: 461 RVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAA 502

[Close]

BLAST of Lcy06g017650 vs. NCBI nr
Match: RVX19336.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F SWW       WEG++ M KL+F+++ LK WNK  FG ++ +K+ +L+
Sbjct: 742 MWLQHPSFKKCFSSWWREFDGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKTILD 801

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  NL  +R+  K E   LI +E I WRQKAKVKW KD DCN   FH
Sbjct: 802 EIANIDVIEQEGVLSSNLSAQRVERKGELEELILREEIHWRQKAKVKWVKDGDCNSTLFH 861

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 862 KVANGRQNR 870

[Close]

BLAST of Lcy06g017650 vs. NCBI nr
Match: CAN70928.1 (hypothetical protein VITISV_016057 [Vitis vinifera])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-26
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F +WW      +WEG++ M KL+F+++ LK WNK  FG ++ +K  +L+
Sbjct: 1   MWLQHHSFKECFSNWWREFEGNRWEGHKFMKKLQFVKAKLKDWNKNTFGMLKERKTTILD 60

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  +L  +R+ +K E   LI +E I WRQKAKVKW KD DCN   FH
Sbjct: 61  EIANIDAIEQEGALSSDLAAQRVIIKGELEELILREEIHWRQKAKVKWVKDGDCNSKLFH 120

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 121 KVANGRQNR 129

[Close]

BLAST of Lcy06g017650 vs. NCBI nr
Match: CAN82413.1 (hypothetical protein VITISV_039150 [Vitis vinifera])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 1   MWLEH--LKSSFPSWWNVEASGKWEGYRLMGKLRFLRSTLKSWNKEVFGDIRVKKQEVLN 60
           MWL+H   K  F SWW       WEG++ M KL+F+++ LK WNK  FG ++ +K+ +L+
Sbjct: 60  MWLQHPSFKECFSSWWREFDGNGWEGHKFMRKLQFVKAKLKDWNKNSFGTLKERKKSILD 119

Query: 61  RIKEIDTLEEDGPLDENLKGERLSLKIEFANLIKKETISWRQKAKVKWAKDNDCNLAFFH 120
            I  ID +E++G L  +L  +R+  K E   LI +E I WRQKAKVKW KD DCN  FFH
Sbjct: 120 EIANIDAIEQEGVLSFDLSAQRVLRKGELEELILREEIHWRQKAKVKWVKDGDCNSKFFH 179

Query: 121 RLAMAEEAR 128
           ++A   + R
Sbjct: 180 KVANDRQNR 188

[Close]

BLAST of Lcy06g017650 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 29/99 (29.29%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 31  LRFLRSTLKSWNKEVFGDIRVKKQEVLNRIKEIDTLEEDGPLDENLKGERLSLK--IEFA 90
           L+  +   K  N++ FG+I+ K +E L+ ++ I +     P D   + E ++ K    FA
Sbjct: 369 LKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFA 428

Query: 91  NLIKKETISWRQKAKVKWAKDNDCNLAFFHRLAMAEEAR 128
             ++     +RQK+++KW +D D N  FFH++ +A +A+
Sbjct: 429 AALES---FYRQKSRIKWLQDGDANTRFFHKVILANQAK 464

The following BLAST results are available for this feature:

BLAST of Lcy06g017650 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g017650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQK0	4.6e-30	53.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BW32	1.6e-27	57.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438KDP4	1.4e-26	44.96	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_73 PE=4 S...	[more]
A5C6D8	4.0e-26	43.41	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A5AP81	6.9e-26	44.96	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Lcy06g017650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057384.1	9.5e-30	53.66	hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK300...	[more]
TYK03178.1	3.4e-27	57.84	hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa]	[more]
RVX19336.1	2.9e-26	44.96	putative mitochondrial protein [Vitis vinifera]	[more]
CAN70928.1	8.3e-26	43.41	hypothetical protein VITISV_016057 [Vitis vinifera]	[more]
CAN82413.1	1.4e-25	44.96	hypothetical protein VITISV_039150 [Vitis vinifera]	[more]

BLAST of Lcy06g017650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	1.2e-06	29.29	DNAse I-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017650.1	Lcy06g017650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding