Lcy06g017480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr06: 40204673 .. 40205283 (+)
RNA-Seq Expression	Lcy06g017480
Synteny	Lcy06g017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGACTTGAAGTCTGACTTGAAGGCCATCAAGAAATTCTTACGAAGATTTTCTAAGGTACTATAATGTTTAGTTTACTTTTTTTATTTTGAAAAATCTCAACGGTGTAGTTAAACATACAATTTATGTAGGGCAAATATGTAAATCCGGAGAAATACTTTGGATCAGATGAGGGTCCTTCTAAAGAAGGTGATGAAGGTTCGTCTAAAGGAGGTGACATGTCTGAAAACCCAAAAAAAGATGATGGGGATGATGGTCCTTCTGAAGGAGGTGATAAGGGTCCTTTGGGCGGGTCCGAACACCCTGAAAAAGGAGATGAGCCAACTGAAGAGAACCCAAAAGGAGGTGATGAGGGTTCTTTGGGTGGGTCCGAACACCCAGAAAAAGGAGATGAGCCAGCTGAAGAGAACCCAAAAGGAGGTGATGAGGGTCCTTCGGGCGGGTCCGAACACTTTCAAAAGGAGGTGAAAGGAACTGACAAGGTAGAGGAGGGACACACAAACTTGGTAATAATTAGGTTGTATTATTTATCATTCGTACTATTTACGTTAGTTTATTGATATTGTGTCTGTTGCATCGTTGCATAGCCTGTTGAGACGTTATAG

mRNA sequence

ATGGAAACCGACTTGAAGTCTGACTTGAAGGCCATCAAGAAATTCTTACGAAGATTTTCTAAGGGCAAATATGTAAATCCGGAGAAATACTTTGGATCAGATGAGGGTCCTTCTAAAGAAGGTGATGAAGGTTCGTCTAAAGGAGGTGACATGTCTGAAAACCCAAAAAAAGATGATGGGGATGATGGTCCTTCTGAAGGAGGTGATAAGGGTCCTTTGGGCGGGTCCGAACACCCTGAAAAAGGAGATGAGCCAACTGAAGAGAACCCAAAAGGAGGTGATGAGGGTTCTTTGGGTGGGTCCGAACACCCAGAAAAAGGAGATGAGCCAGCTGAAGAGAACCCAAAAGGAGGTGATGAGGGTCCTTCGGGCGGGTCCGAACACTTTCAAAAGGAGGTGAAAGGAACTGACAAGGTAGAGGAGGGACACACAAACTTGCCTGTTGAGACGTTATAG

Coding sequence (CDS)

ATGGAAACCGACTTGAAGTCTGACTTGAAGGCCATCAAGAAATTCTTACGAAGATTTTCTAAGGGCAAATATGTAAATCCGGAGAAATACTTTGGATCAGATGAGGGTCCTTCTAAAGAAGGTGATGAAGGTTCGTCTAAAGGAGGTGACATGTCTGAAAACCCAAAAAAAGATGATGGGGATGATGGTCCTTCTGAAGGAGGTGATAAGGGTCCTTTGGGCGGGTCCGAACACCCTGAAAAAGGAGATGAGCCAACTGAAGAGAACCCAAAAGGAGGTGATGAGGGTTCTTTGGGTGGGTCCGAACACCCAGAAAAAGGAGATGAGCCAGCTGAAGAGAACCCAAAAGGAGGTGATGAGGGTCCTTCGGGCGGGTCCGAACACTTTCAAAAGGAGGTGAAAGGAACTGACAAGGTAGAGGAGGGACACACAAACTTGCCTGTTGAGACGTTATAG

Protein sequence

METDLKSDLKAIKKFLRRFSKGKYVNPEKYFGSDEGPSKEGDEGSSKGGDMSENPKKDDGDDGPSEGGDKGPLGGSEHPEKGDEPTEENPKGGDEGSLGGSEHPEKGDEPAEENPKGGDEGPSGGSEHFQKEVKGTDKVEEGHTNLPVETL

Homology

[Close]

BLAST of Lcy06g017480 vs. ExPASy Swiss-Prot
Match: Q01033 (Uncharacterized gene 48 protein OS=Saimiriine herpesvirus 2 (strain 11) OX=10383 GN=48 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 32  GSDEGP--SKEGDEGSSKG---GDMSENPKKDDGDDGPSEGGDKGPLGGSEHPEKGDEPT 91
           G DEG     EGDEG  +G   GD  E+  +D+GD+G  EG D+G  G  E  ++GDE  
Sbjct: 543 GEDEGDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGE 602

Query: 92  EENPKGGDEGSLG---GSEHPEKGDEPAEENPKGGDEGPSGGSEHFQKEVKGTDKVEEG 143
           +E    GDEG  G   G E  ++GDE  +E  +G DEG  G  E  + E +G +  +EG
Sbjct: 603 DEGEDEGDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEG 661

[Close]

BLAST of Lcy06g017480 vs. ExPASy TrEMBL
Match: A0A5K4FBD0 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 32  GSDEGPSKEGDEGSSKGGD---MSENPKKDDGDDGPSEGGDKGPLGGSEHPEKGDEPTEE 91
           G DEG  + GDEG  +GG+    + N  KDDGDDG  EGGD+G  GG E  E  ++  ++
Sbjct: 47  GGDEGGDEGGDEGGDEGGEEPNENNNDNKDDGDDGGDEGGDEGGEGGEEPNENNNDNKDD 106

Query: 92  NPKGGDEGSLGGSEHPEKGDEPAEENPKGGDEGPSGGSE 128
              GGDEG   G +  E G+EP E N    D+G  GG E
Sbjct: 107 GDDGGDEGGDEGGD--EGGEEPNENNNDNKDDGDDGGDE 143

The following BLAST results are available for this feature:

BLAST of Lcy06g017480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01033	2.6e-05	40.34	Uncharacterized gene 48 protein OS=Saimiriine herpesvirus 2 (strain 11) OX=10383...	[more]

BLAST of Lcy06g017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K4FBD0	8.7e-04	44.44	Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1	[more]

BLAST of Lcy06g017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lcy06g017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017480.1	Lcy06g017480.1	mRNA