Lcy06g017420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Proteasome subunit alpha type-3
Location	Chr06: 40036416 .. 40037211 (-)
RNA-Seq Expression	Lcy06g017420
Synteny	Lcy06g017420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACATCCAATTAGAGCAACAATAATGGGAGGAAATTGGTGCATGCTTCTCATGGCTATTATCCTCTTCATTTCCGGTGCTCCATTGGGTCACAGCTTAATGATCGGCGGCAACAACATCACCAAATTAATTGTTTCAGCCACAGCCTTTTGCACACCAAGTGGGAACCCCAATCCCATGGGTGGTAGCCCGGGTCTAGCCGGGGCTAATGTGACCGTAGGCTGCAACGGTGGCCAGCTCCCGATCGGGTCAGGCATCACAAATGGAACTGGCTCCGTCGAAATCAACATACCATTGCTCGACGAGGTCCCATTTAACTGCACAATGAGGATTCCACTCCCTGTCTCCGGCTGCAGCGCTTTGCCTTCAACTGGATTTCTCGAAGCTCCTCTTCAAGTGGTTTCCAATGGACTCCACTGCCTTGTCGTCACTGCCGTTAATCTCATCCTTCGTGTTTGACTTTTCATATATATACCAATGGAGTTTGTGATTAATAAGACAATAATATAATATTGCTAATTTAGAATAAACAAATGCTTTTCTTATGAGAAACTGTACTCCGATTAATGAAAAAAATTAATAATAAACCTTATAATAACTATTTTCAACTGCTTAATACTCTGTCGTTTGCTTTTAATATTATTGTGTAAAAGTTCAACTATATATATACATATTATTGTAAGAGTGTTAGTGGGAAGTCTTTTCCTTTTCTGTTGTCCAAAAAAAAAAATCTTTTCCTTTTCTTTTTCGGTAATCGACATTCGTAGAATTGATGAGTAACTGTCAAAGTGAG

mRNA sequence

ATGACACATCCAATTAGAGCAACAATAATGGGAGGAAATTGGTGCATGCTTCTCATGGCTATTATCCTCTTCATTTCCGGTGCTCCATTGGGTCACAGCTTAATGATCGGCGGCAACAACATCACCAAATTAATTGTTTCAGCCACAGCCTTTTGCACACCAAGTGGGAACCCCAATCCCATGGGTGGTAGCCCGGGTCTAGCCGGGGCTAATGTGACCGTAGGCTGCAACGGTGGCCAGCTCCCGATCGGGTCAGGCATCACAAATGGAACTGGCTCCGTCGAAATCAACATACCATTGCTCGACGAGGTCCCATTTAACTGCACAATGAGGATTCCACTCCCTGTCTCCGGCTGCAGCGCTTTGCCTTCAACTGGATTTCTCGAAGCTCCTCTTCAAGTGGTTTCCAATGGACTCCACTGCCTTGTCGTCACTGCCGTTAATCTCATCCTTCGTGTTTGACTTTTCATATATATACCAATGGAGTTTGTGATTAATAAGACAATAATATAATATTGCTAATTTAGAATAAACAAATGCTTTTCTTATGAGAAACTGTACTCCGATTAATGAAAAAAATTAATAATAAACCTTATAATAACTATTTTCAACTGCTTAATACTCTGTCGTTTGCTTTTAATATTATTGTGTAAAAGTTCAACTATATATATACATATTATTGTAAGAGTGTTAGTGGGAAGTCTTTTCCTTTTCTGTTGTCCAAAAAAAAAAATCTTTTCCTTTTCTTTTTCGGTAATCGACATTCGTAGAATTGATGAGTAACTGTCAAAGTGAG

Coding sequence (CDS)

ATGACACATCCAATTAGAGCAACAATAATGGGAGGAAATTGGTGCATGCTTCTCATGGCTATTATCCTCTTCATTTCCGGTGCTCCATTGGGTCACAGCTTAATGATCGGCGGCAACAACATCACCAAATTAATTGTTTCAGCCACAGCCTTTTGCACACCAAGTGGGAACCCCAATCCCATGGGTGGTAGCCCGGGTCTAGCCGGGGCTAATGTGACCGTAGGCTGCAACGGTGGCCAGCTCCCGATCGGGTCAGGCATCACAAATGGAACTGGCTCCGTCGAAATCAACATACCATTGCTCGACGAGGTCCCATTTAACTGCACAATGAGGATTCCACTCCCTGTCTCCGGCTGCAGCGCTTTGCCTTCAACTGGATTTCTCGAAGCTCCTCTTCAAGTGGTTTCCAATGGACTCCACTGCCTTGTCGTCACTGCCGTTAATCTCATCCTTCGTGTTTGA

Protein sequence

MTHPIRATIMGGNWCMLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVGCNGGQLPIGSGITNGTGSVEINIPLLDEVPFNCTMRIPLPVSGCSALPSTGFLEAPLQVVSNGLHCLVVTAVNLILRV

Homology

[Close]

BLAST of Lcy06g017420 vs. ExPASy TrEMBL
Match: A0A7N2M3T9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-12
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 33  SLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVGCNGGQLPIGSGITNGTG 92
           +L I G NI ++IV    FC+ +GNP P   + GLAG NV + CNG Q  +G  +TN TG
Sbjct: 27  NLSINGTNIAEIIVLGRVFCSLTGNPLPNIEASGLAGVNVALVCNGAQGSLGEALTNATG 86

Query: 93  SVEINIPLLDEVPFN---CTMRIPLPVSGCSALPSTGFLEAPLQVVS 137
              I +  +D + F+   C+M + LPV  C  LP TG L A + +VS
Sbjct: 87  FYNIVLKTVDGITFDKSLCSMAVKLPVDNCILLPPTGTLTATITLVS 133

[Close]

BLAST of Lcy06g017420 vs. ExPASy TrEMBL
Match: A0A067D2R4 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046358mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-12
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 46  VSATAFCTPSGNPNPMGGSPGLAGANVTVGCNGGQLPIGSGITNGTGSVEINIPLLDEV- 105
           ++ T FCT SGNP P   SPG+AG NV V CNGG   I   +TN  G   + + LLD + 
Sbjct: 2   ITGTVFCTVSGNPLPGVSSPGIAGINVGVRCNGGTTDIAQALTNSAGFFSVALNLLDGLL 61

Query: 106 --PFNCTMRIPLPVSGCSALPSTGFLEA 131
             P +C + I LPV+GC+ LP TG L+A
Sbjct: 62  FDPSHCVVYIKLPVAGCALLPPTGSLQA 89

[Close]

BLAST of Lcy06g017420 vs. ExPASy TrEMBL
Match: A0A1S3XIQ4 (uncharacterized protein LOC107765646 OS=Nicotiana tabacum OX=4097 GN=LOC107765646 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  + +PL H ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSLFLIATTSPLAHGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  I  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIITALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

[Close]

BLAST of Lcy06g017420 vs. ExPASy TrEMBL
Match: A0A1S3ZHJ7 (uncharacterized protein LOC107786908 OS=Nicotiana tabacum OX=4097 GN=LOC107786908 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  +  PL H ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSLFLIATTTPLAHGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  I  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIITALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

[Close]

BLAST of Lcy06g017420 vs. ExPASy TrEMBL
Match: A0A1U7VXY6 (uncharacterized protein LOC104222986 OS=Nicotiana sylvestris OX=4096 GN=LOC104222986 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  +  PL H ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSLFLIATTTPLAHGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  I  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIITALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

[Close]

BLAST of Lcy06g017420 vs. NCBI nr
Match: XP_030924683.1 (uncharacterized protein LOC115951660 [Quercus lobata])

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-12
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 33  SLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVGCNGGQLPIGSGITNGTG 92
           +L I G NI ++IV    FC+ +GNP P   + GLAG NV + CNG Q  +G  +TN TG
Sbjct: 27  NLSINGTNIAEIIVLGRVFCSLTGNPLPNIEASGLAGVNVALVCNGAQGSLGEALTNATG 86

Query: 93  SVEINIPLLDEVPFN---CTMRIPLPVSGCSALPSTGFLEAPLQVVS 137
              I +  +D + F+   C+M + LPV  C  LP TG L A + +VS
Sbjct: 87  FYNIVLKTVDGITFDKSLCSMAVKLPVDNCILLPPTGTLTATITLVS 133

[Close]

BLAST of Lcy06g017420 vs. NCBI nr
Match: KDO37239.1 (hypothetical protein CISIN_1g046358mg, partial [Citrus sinensis])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-11
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 46  VSATAFCTPSGNPNPMGGSPGLAGANVTVGCNGGQLPIGSGITNGTGSVEINIPLLDEV- 105
           ++ T FCT SGNP P   SPG+AG NV V CNGG   I   +TN  G   + + LLD + 
Sbjct: 2   ITGTVFCTVSGNPLPGVSSPGIAGINVGVRCNGGTTDIAQALTNSAGFFSVALNLLDGLL 61

Query: 106 --PFNCTMRIPLPVSGCSALPSTGFLEA 131
             P +C + I LPV+GC+ LP TG L+A
Sbjct: 62  FDPSHCVVYIKLPVAGCALLPPTGSLQA 89

[Close]

BLAST of Lcy06g017420 vs. NCBI nr
Match: XP_009627030.1 (uncharacterized protein LOC104117662 [Nicotiana tomentosiformis] >XP_016439801.1 PREDICTED: uncharacterized protein LOC107765646 [Nicotiana tabacum])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-10
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  + +PL H ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSLFLIATTSPLAHGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  I  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIITALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

[Close]

BLAST of Lcy06g017420 vs. NCBI nr
Match: XP_009772637.1 (PREDICTED: uncharacterized protein LOC104222986 [Nicotiana sylvestris] >XP_016463908.1 PREDICTED: uncharacterized protein LOC107786908 [Nicotiana tabacum])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  +  PL H ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSLFLIATTTPLAHGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  I  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIITALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

[Close]

BLAST of Lcy06g017420 vs. NCBI nr
Match: XP_019262989.1 (PREDICTED: uncharacterized protein LOC109240765 [Nicotiana attenuata] >OIT37433.1 hypothetical protein A4A49_06109 [Nicotiana attenuata])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 16  MLLMAIILFISGAPLGHSLMIGGNNITKLIVSATAFCTPSGNPNPMGGSPGLAGANVTVG 75
           + L+++ L  +  PL + ++I G N+  L V     C+ +GNP      PG+AG NV + 
Sbjct: 9   LFLLSVFLIATTTPLAYGVLINGQNVIGLRVRGLLVCSATGNP----PGPGIAGVNVKIS 68

Query: 76  CNGGQLPIGSGITNGTGSVEINIPLLDEVPFN-----CTMRIPLPVSGCSALPSTGFLEA 135
           CNGG   +   +T+  G  +  +  LD + F+     C + I  P++ CS L STG L A
Sbjct: 69  CNGGSTSLVQVLTDANGYFQTIVTALDGILFDQTTTPCQVIIDTPIASCSLLASTGTLRA 128

Query: 136 PLQVVSNGLHCLV 144
           P+ +V   +  L+
Sbjct: 129 PITLVGTLIQTLL 137

The following BLAST results are available for this feature:

BLAST of Lcy06g017420 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g017420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2M3T9	4.0e-12	42.06	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A067D2R4	8.8e-12	47.73	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046358m...	[more]
A0A1S3XIQ4	1.3e-10	33.08	uncharacterized protein LOC107765646 OS=Nicotiana tabacum OX=4097 GN=LOC10776564...	[more]
A0A1S3ZHJ7	1.7e-10	33.08	uncharacterized protein LOC107786908 OS=Nicotiana tabacum OX=4097 GN=LOC10778690...	[more]
A0A1U7VXY6	1.7e-10	33.08	uncharacterized protein LOC104222986 OS=Nicotiana sylvestris OX=4096 GN=LOC10422...	[more]

BLAST of Lcy06g017420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030924683.1	8.2e-12	42.06	uncharacterized protein LOC115951660 [Quercus lobata]	[more]
KDO37239.1	1.8e-11	47.73	hypothetical protein CISIN_1g046358mg, partial [Citrus sinensis]	[more]
XP_009627030.1	2.6e-10	33.08	uncharacterized protein LOC104117662 [Nicotiana tomentosiformis] >XP_016439801.1...	[more]
XP_009772637.1	3.4e-10	33.08	PREDICTED: uncharacterized protein LOC104222986 [Nicotiana sylvestris] >XP_01646...	[more]
XP_019262989.1	1.7e-09	31.58	PREDICTED: uncharacterized protein LOC109240765 [Nicotiana attenuata] >OIT37433....	[more]

BLAST of Lcy06g017420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040404	Phylloplanin-like	PANTHER	PTHR34458	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN-RELATED	coord: 14..142
None	No IPR available	PANTHER	PTHR34458:SF11	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN	coord: 14..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017420.1	Lcy06g017420.1	mRNA