Lcy06g017330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr06: 39866883 .. 39867359 (-)
RNA-Seq Expression	Lcy06g017330
Synteny	Lcy06g017330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGAGCTTGCAAAACAACTAGCCGATCTCAAGGTTACTCCTGCAGAAAAAGCAAGTATTTTTCAACTTCCGAACAGCGAAATAAATCGGTCAGAACAAAAACTAGTTAACTCGATACTTTGCAAAGTATACACCAACAAGAAAATCAATATGGAGATTTTCAAGTCAAAGATGCCTAAGATATGGAATCAAGAGCATACGATCATTGATAGCATGGGGTTTAATATGTTTTTGTGCAAATTCAAGAACACAAGAATAAAGGGATGGATTTTGGAGATGGGGCCATGGTTCTATGATAAGACTTTACTTCTGTTTGAGGAACCTAAAGCGGGCATCAACAGCGAAGACATGGAGTTCAAGTACGTTTCCTTTTGGATTCATTTTCCTAAATTGCCTTATGCTTGCTTTTCCAGGTCATCAGTGGAAGCGATTGGCAATTTTCTAGGTAAGGTTGAGAAAATTGATATATAG

mRNA sequence

ATGGAAGAAGAGCTTGCAAAACAACTAGCCGATCTCAAGGTTACTCCTGCAGAAAAAGCAAGTATTTTTCAACTTCCGAACAGCGAAATAAATCGGTCAGAACAAAAACTAGTTAACTCGATACTTTGCAAAGTATACACCAACAAGAAAATCAATATGGAGATTTTCAAGTCAAAGATGCCTAAGATATGGAATCAAGAGCATACGATCATTGATAGCATGGGGTTTAATATGTTTTTGTGCAAATTCAAGAACACAAGAATAAAGGGATGGATTTTGGAGATGGGGCCATGGTTCTATGATAAGACTTTACTTCTGTTTGAGGAACCTAAAGCGGGCATCAACAGCGAAGACATGGAGTTCAAGTCATCAGTGGAAGCGATTGGCAATTTTCTAGGTAAGGTTGAGAAAATTGATATATAG

Coding sequence (CDS)

ATGGAAGAAGAGCTTGCAAAACAACTAGCCGATCTCAAGGTTACTCCTGCAGAAAAAGCAAGTATTTTTCAACTTCCGAACAGCGAAATAAATCGGTCAGAACAAAAACTAGTTAACTCGATACTTTGCAAAGTATACACCAACAAGAAAATCAATATGGAGATTTTCAAGTCAAAGATGCCTAAGATATGGAATCAAGAGCATACGATCATTGATAGCATGGGGTTTAATATGTTTTTGTGCAAATTCAAGAACACAAGAATAAAGGGATGGATTTTGGAGATGGGGCCATGGTTCTATGATAAGACTTTACTTCTGTTTGAGGAACCTAAAGCGGGCATCAACAGCGAAGACATGGAGTTCAAGTCATCAGTGGAAGCGATTGGCAATTTTCTAGGTAAGGTTGAGAAAATTGATATATAG

Protein sequence

MEEELAKQLADLKVTPAEKASIFQLPNSEINRSEQKLVNSILCKVYTNKKINMEIFKSKMPKIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPKAGINSEDMEFKSSVEAIGNFLGKVEKIDI

Homology

[Close]

BLAST of Lcy06g017330 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.1e-20
Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 1   MEEELAKQLAD-LKVTPAEKASIFQLPNSEI-NRSEQKLVN-------SILCKVYTNKKI 60
           M +EL  QL + LK+T  EK  IF +   EI +  E ++ +       S++CK+ T K I
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61  NMEIFKSKMPKIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPK 120
             E+FK+ MP+IW   +  I+S+G N+FLCKFK  R K  IL  GPWF+DK++++ EEP+
Sbjct: 61  PGEVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPR 120

Query: 121 AGINSEDMEFKSSVEAIGNFLGKVEKI 139
           A  N  ++EF+   E   + L + + I
Sbjct: 121 ANCNFNELEFRKKEETTQHILWECKVI 147

[Close]

BLAST of Lcy06g017330 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MEEELAKQLAD-LKVTPAEKASIFQLPNSEI-NRSEQKLVN-------SILCKVYTNKKI 60
           M +EL  QL + LK+T  EK  IF +   EI +  E ++ +       S++CK+ T K I
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61  NMEIFKSKMPKIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPK 120
             E+FK+ MP+IW   +  I+S+G N+FLCKFK  R K  IL  GPWF+DK++++ EEP+
Sbjct: 61  PGEVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPR 120

Query: 121 AGINSEDMEFKSS 125
           A  N  ++EF+++
Sbjct: 121 ANCNFNELEFRTN 133

[Close]

BLAST of Lcy06g017330 vs. ExPASy TrEMBL
Match: A0A6J1CQJ5 (uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013413 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 2   EEELAKQLADLKVTPAEKASIFQLPNSEINRSEQKLVNSILCKVYTNKKINMEIFKSKMP 61
           +E L++Q+  LK+T  EK  IF +   EI   +++   S++CK+ T K I  E+FK+ MP
Sbjct: 3   DELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMP 62

Query: 62  KIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPKAGINSEDMEF 121
           +IW   +  I+S+G N+FLCKFK  R K  IL  GP F+DK++++ EEP+A  N  ++E+
Sbjct: 63  RIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNELEY 122

[Close]

BLAST of Lcy06g017330 vs. ExPASy TrEMBL
Match: A0A5C7ITT0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001316 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.9e-10
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 33  SEQKLVNSILCKVYTNKKINMEIFKSKMPKIW-NQEHTIIDSMGFNMFLCKFKNTRIKGW 92
           S++K+ +S++ K+ T K IN E F S +PK+W   E   I++MG N+F+ +F+N+  K  
Sbjct: 75  SDRKVAHSLVGKILTTKPINREAFISWIPKLWRTSEPFEINAMGRNIFVLRFRNSEDKRR 134

Query: 93  ILEMGPWFYDKTLLLFEEPKAGINSEDMEF------------------KSSVEAIGNFLG 141
           +L  GPW ++ +++  EEPK     +D+EF                  + +  A+G  L 
Sbjct: 135 VLSGGPWCFNDSIIALEEPKGMGKFQDLEFCRVSFRVQLHNLPLLCMNQEAGLALGRMLE 194

[Close]

BLAST of Lcy06g017330 vs. ExPASy TrEMBL
Match: A0A5C7H9Y2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019269 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 18  EKASIFQLPNSEINRSEQKLVNSILCKVYTNKKINMEIFKSKMPKIWNQEHTI-IDSMGF 77
           +   I ++  S   R EQ L  S++ K  TNK IN E FKS +  IW  ++ + ++ MG 
Sbjct: 18  DNGPIERIKGSLQERGEQSLSLSLIGKAITNKVINREAFKSTISTIWQTKNEVTMELMGI 77

Query: 78  NMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPKAGINSEDMEFK 123
           N+F  +F+N   +  ILE GPW +DK LL+  E        D++F+
Sbjct: 78  NIFKFRFQNYWDRKRILEGGPWLFDKQLLVLREASGSEKVTDLQFR 123

[Close]

BLAST of Lcy06g017330 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-19
Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 1   MEEELAKQLAD-LKVTPAEKASIFQLPNSEI-NRSEQKLVN-------SILCKVYTNKKI 60
           M +EL  QL + LK+T  EK  IF +   EI +  E ++ +       S++CK+ T K I
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61  NMEIFKSKMPKIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPK 120
             E+FK+ MP+IW   +  I+S+G N+FLCKFK  R K  IL  GPWF+DK++++ EEP+
Sbjct: 61  PGEVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPR 120

Query: 121 AGINSEDMEFKSSVEAIGNFLGKVEKI 139
           A  N  ++EF+   E   + L + + I
Sbjct: 121 ANCNFNELEFRKKEETTQHILWECKVI 147

[Close]

BLAST of Lcy06g017330 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-19
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MEEELAKQLAD-LKVTPAEKASIFQLPNSEI-NRSEQKLVN-------SILCKVYTNKKI 60
           M +EL  QL + LK+T  EK  IF +   EI +  E ++ +       S++CK+ T K I
Sbjct: 1   MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61  NMEIFKSKMPKIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPK 120
             E+FK+ MP+IW   +  I+S+G N+FLCKFK  R K  IL  GPWF+DK++++ EEP+
Sbjct: 61  PGEVFKNMMPRIWANVNVKIESVGKNLFLCKFKTVRDKSKILNNGPWFFDKSMVMLEEPR 120

Query: 121 AGINSEDMEFKSS 125
           A  N  ++EF+++
Sbjct: 121 ANCNFNELEFRTN 133

[Close]

BLAST of Lcy06g017330 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 2   EEELAKQLADLKVTPAEKASIFQLPNSEINRSEQKLVNSILCKVYTNKKINMEIFKSKMP 61
           +E L++Q+  LK+T  EK  IF +   EI   +++   S++CK+ T K I  E+FK+ MP
Sbjct: 3   DELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMP 62

Query: 62  KIWNQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPKAGINSEDMEF 121
           +IW   +  I+S+G N+FLCKFK  R K  IL  GP F+DK++++ EEP+A  N  ++E+
Sbjct: 63  RIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNELEY 122

[Close]

BLAST of Lcy06g017330 vs. NCBI nr
Match: TXG72737.1 (hypothetical protein EZV62_001316 [Acer yangbiense])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 33  SEQKLVNSILCKVYTNKKINMEIFKSKMPKIW-NQEHTIIDSMGFNMFLCKFKNTRIKGW 92
           S++K+ +S++ K+ T K IN E F S +PK+W   E   I++MG N+F+ +F+N+  K  
Sbjct: 75  SDRKVAHSLVGKILTTKPINREAFISWIPKLWRTSEPFEINAMGRNIFVLRFRNSEDKRR 134

Query: 93  ILEMGPWFYDKTLLLFEEPKAGINSEDMEF------------------KSSVEAIGNFLG 141
           +L  GPW ++ +++  EEPK     +D+EF                  + +  A+G  L 
Sbjct: 135 VLSGGPWCFNDSIIALEEPKGMGKFQDLEFCRVSFRVQLHNLPLLCMNQEAGLALGRMLE 194

[Close]

BLAST of Lcy06g017330 vs. NCBI nr
Match: TXG70631.1 (hypothetical protein EZV62_005566 [Acer yangbiense])

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-09
Identity = 47/156 (30.13%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 3   EELAKQLADLKVTPAEKASIFQLPNSEINRSEQKLVNSILCKVYTNKKINMEIFKSKMPK 62
           EE+AK L +      ++  + QL     N+ E++L   +  K+ ++K +N + F + MPK
Sbjct: 5   EEVAK-LCEALTLKEKEGPLMQLQEGMTNKGEKRLALRLAGKLLSSKPVNRDAFMAVMPK 64

Query: 63  IW-NQEHTIIDSMGFNMFLCKFKNTRIKGWILEMGPWFYDKTLLLFEEPKAGINSEDMEF 122
           IW   +   I+ +  N F   FKN + +  IL  GPW +DK LL+  EPK   +++DM F
Sbjct: 65  IWVTIDGFDIEIIDGNTFSFTFKNEKDQLRILNRGPWSFDKALLVLVEPKGKGDTQDMSF 124

Query: 123 KSSV------------------EAIGNFLGKVEKID 140
                                  A+GN +G+V++ID
Sbjct: 125 NRVAFWVQIHRVPLICMTSEIGRAVGNMIGEVKEID 159

The following BLAST results are available for this feature:

BLAST of Lcy06g017330 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g017330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL64	8.1e-20	39.46	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	2.3e-19	41.35	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQJ5	1.2e-18	41.67	uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5C7ITT0	9.9e-10	32.28	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001316 PE=4 SV=1	[more]
A0A5C7H9Y2	1.4e-08	35.85	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01926...	[more]

BLAST of Lcy06g017330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154990.1	1.7e-19	39.46	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	4.9e-19	41.35	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022143536.1	2.4e-18	41.67	uncharacterized protein LOC111013413 [Momordica charantia]	[more]
TXG72737.1	2.0e-09	32.28	hypothetical protein EZV62_001316 [Acer yangbiense]	[more]
TXG70631.1	4.6e-09	30.13	hypothetical protein EZV62_005566 [Acer yangbiense]	[more]

BLAST of Lcy06g017330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 30..122 e-value: 1.4E-10 score: 40.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017330.1	Lcy06g017330.1	mRNA