Lcy06g017120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr06: 39194526 .. 39195218 (-)
RNA-Seq Expression	Lcy06g017120
Synteny	Lcy06g017120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATGGACAACATGTCTTCTAGGATTAAATTGATCAAATTGTGTGCCTAAGATCTAAAATTACTTCCGCATGTGTGATATTAACACCTACAATTTGAATGTTTCCGAGCTAGGGATACTTGGAAATGAACCTTCAACCAAGTATTTCTGGAGGAAGATTTCAACAAAAACTTTATTGATAGATGGATGAAGATAAATTCAAGTTGCTCGTTAGCTGATCTGGAGCTGGTAGCTGTTATGAGCTGGGCGATCTGGAATGATAAAAACAAGACGGTTCATAATGAGGGAATACCTCCAATTAATGTCAGGAGTCAATGGATATTCGATTATCTAAAGCTTTCCAAAAAGCAAATTTTGAAAGATTCTAGACCTGCTATTTCTGTGAATCAATCGGTCCCTGTGCAATCGCCTGAGTGGTGGATCCCTCCTCCAGAGGGATTTTGGAAATTGAACTCTGATGTAACTTGGGGATCTAATCCTTCTTCAATGGGAATGGGCCTCATATTTAGGGATTCAGATGGTATTGTGCGTGGGGCATTTGCTTCCTATCTATATGTTGAATTTACGGCTCCCATTGCTGAACTGAATGTAATTTTTGAAGGTATTCGCATGGCAATATCACTGGGGTGTGAAAGACTATTGGTGGAATTTGATTGCTTGTTGGCCATTAATCTTGTTTCAAAGAAGGACTGA

mRNA sequence

CTTATGGACAACATGTCTTCTAGGATTAAATTGATCAAATTGTGTGCCTAAGATCTAAAATTACTTCCGCATGTGTGATATTAACACCTACAATTTGAATGTTTCCGAGCTAGGGATACTTGGAAATGAACCTTCAACCAAGTATTTCTGGAGGAAGATTTCAACAAAAACTTTATTGATAGATGGATGAAGATAAATTCAAGTTGCTCGTTAGCTGATCTGGAGCTGGTAGCTGTTATGAGCTGGGCGATCTGGAATGATAAAAACAAGACGGTTCATAATGAGGGAATACCTCCAATTAATGTCAGGAGTCAATGGATATTCGATTATCTAAAGCTTTCCAAAAAGCAAATTTTGAAAGATTCTAGACCTGCTATTTCTGTGAATCAATCGGTCCCTGTGCAATCGCCTGAGTGGTGGATCCCTCCTCCAGAGGGATTTTGGAAATTGAACTCTGATGTAACTTGGGGATCTAATCCTTCTTCAATGGGAATGGGCCTCATATTTAGGGATTCAGATGGTATTGTGCGTGGGGCATTTGCTTCCTATCTATATGTTGAATTTACGGCTCCCATTGCTGAACTGAATGTAATTTTTGAAGGTATTCGCATGGCAATATCACTGGGGTGTGAAAGACTATTGGTGGAATTTGATTGCTTGTTGGCCATTAATCTTGTTTCAAAGAAGGACTGA

Coding sequence (CDS)

ATGAAGATAAATTCAAGTTGCTCGTTAGCTGATCTGGAGCTGGTAGCTGTTATGAGCTGGGCGATCTGGAATGATAAAAACAAGACGGTTCATAATGAGGGAATACCTCCAATTAATGTCAGGAGTCAATGGATATTCGATTATCTAAAGCTTTCCAAAAAGCAAATTTTGAAAGATTCTAGACCTGCTATTTCTGTGAATCAATCGGTCCCTGTGCAATCGCCTGAGTGGTGGATCCCTCCTCCAGAGGGATTTTGGAAATTGAACTCTGATGTAACTTGGGGATCTAATCCTTCTTCAATGGGAATGGGCCTCATATTTAGGGATTCAGATGGTATTGTGCGTGGGGCATTTGCTTCCTATCTATATGTTGAATTTACGGCTCCCATTGCTGAACTGAATGTAATTTTTGAAGGTATTCGCATGGCAATATCACTGGGGTGTGAAAGACTATTGGTGGAATTTGATTGCTTGTTGGCCATTAATCTTGTTTCAAAGAAGGACTGA

Protein sequence

MKINSSCSLADLELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD

Homology

[Close]

BLAST of Lcy06g017120 vs. ExPASy TrEMBL
Match: A0A803NL40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 52/175 (29.71%), Postives = 84/175 (48.00%), Query Frame = 0


Query: 3    INSSCSLADLELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK---LSKKQILKD 62
            + + C+  +LE +  + W IW ++NK +H        V   +   YL+    ++   +  
Sbjct: 864  LTAGCNNVELEKILCLVWCIWTERNKELHQTKPKQAKVICTFAETYLQRFYKAQAHPIHA 923

Query: 63   SRPAISVNQSVP-------VQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDG 122
            S  + SV Q VP       +  P  W PPP GF+KLN D ++ S+ S +  G + RD  G
Sbjct: 924  SGSSASVQQDVPASPSNASLPGPIRWKPPPPGFYKLNVDASFDSDGSIISNGAVIRDFFG 983

Query: 123  IVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKK 168
             V GAF+  LY  ++    E N +   +  A+  G     VE D L+ +N ++KK
Sbjct: 984  DVMGAFSKPLYGWYSVKEMEANGLIHSLPWALENGLNIDFVETDSLIVVNAINKK 1038

[Close]

BLAST of Lcy06g017120 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 0


Query: 13  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVP 72
           +L A   WAIW D+N   H   +    +R  WI  Y +  S+ Q  K   P  S   SVP
Sbjct: 53  DLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQS---SVP 112

Query: 73  VQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIA 132
             S   W+PP +   K+NSD    S  +S G+GLI RD  G++  A + +L +      A
Sbjct: 113 PPSCR-WLPPRDSAMKVNSDAACRS--TSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFA 172

Query: 133 ELNVIFEGIRMAISLGCERLLVEFDCLLAINLV 165
           E+  I E +++A S    RL+VE DC  AI LV
Sbjct: 173 EIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

[Close]

BLAST of Lcy06g017120 vs. ExPASy TrEMBL
Match: A2ZKD1 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38284 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 49/165 (29.70%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 17  VMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPA 76
           ++ W IW+++N+  H + I P+ V  ++IF Y+              +  KQ+    R  
Sbjct: 79  MLMWRIWHNRNEITHGKSIAPVAVSQRFIFSYVSSLTTIKQYPQADIIKGKQVAHPDRIR 138

Query: 77  ISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLY 136
           +       V  P  W  P  G+ KLN D ++ ++    G+G + RDS G V  A    + 
Sbjct: 139 LPSRAPPAVSPPRRWEKPSTGWMKLNVDGSFQASDGKGGIGAVLRDSSGNVIFAACGSML 198

Query: 137 VEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD 169
           V  +A  AEL    EGI MA+       +VE DCL   NL+  K+
Sbjct: 199 VCGSAMEAELLACKEGIAMALQWTFLPFIVETDCLEVFNLIQSKE 243

[Close]

BLAST of Lcy06g017120 vs. ExPASy TrEMBL
Match: A0A5B7A5C8 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_021401 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.7e-12
Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 5   SSCSLADLELVAVMSWAIWNDKNKTVHN-EGIPPINVRSQWIFDYLKLSKKQILKDSRPA 64
           SS  +A++E+  +M W +W  +N  VH+  G  P+ V S     YLK       +D++  
Sbjct: 362 SSLDMAEVEVCCIMLWLVWGHRNAIVHSGRGRFPVGVFSD-ALQYLK-----EFQDAQHK 421

Query: 65  ISVNQSVPV-QSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYL 124
           + V    PV      W+PP +G +KLN D +W    ++ G+G + RD  G V G FA  L
Sbjct: 422 MGVVPLRPVGVGSASWMPPVDGVYKLNIDGSWLPGENTGGVGGVIRDWKGEVIGGFAKPL 481

Query: 125 YVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV 165
               +A  A+   I  GI  A  +G ++L+VE DCL  I+ +
Sbjct: 482 IQCVSADHAKAMAILHGILFARDIGIQKLVVEGDCLGVISAI 517

[Close]

BLAST of Lcy06g017120 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 11   DLELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSV 70
            DL L A+  W IWND+N  +H + + P+  + +W+  +L    +  + +  P    N   
Sbjct: 1230 DLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRP 1289

Query: 71   PVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPI 130
             VQ   +W P      KLN+D       +S   G I RDS   +  A +  +    +  +
Sbjct: 1290 VVQ---YWRPSSSVSLKLNTDA--ACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLL 1349

Query: 131  AELNVIFEGIRMAISLGCERLLVEFDCLLAINLV 165
            AE+  I EG++ A +     L VE D LLAI L+
Sbjct: 1350 AEIRCILEGLKFAAASNFTHLEVESDSLLAIQLI 1378

[Close]

BLAST of Lcy06g017120 vs. NCBI nr
Match: XP_030943489.1 (uncharacterized protein LOC115968280 [Quercus lobata])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 53/168 (31.55%), Postives = 84/168 (50.00%), Query Frame = 0


Query: 1   MKINSSCSLADLELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDS 60
           +KI    + ADLE+  VM+W+IW ++N+ VH       N    W F       K+ L+D 
Sbjct: 172 LKILEQGTAADLEVFFVMAWSIWYNRNQVVHESTCQLPN--QTWNF------AKRYLQDY 231

Query: 61  RPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFAS 120
           + A S +          W PPP G +K+N D     N  +  +G+I RDS GI+  A A+
Sbjct: 232 KDATSSSGQDKTCVSNSWHPPPAGVFKINVDGATSENGRNSSVGVIIRDSKGIIVAACAN 291

Query: 121 YLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD 169
           YL  +F+A   E   +  GI +A  +G  ++++E D L  I  ++  +
Sbjct: 292 YLSGQFSAFETETLAVECGILLAQEMGLAQIIIESDALSVIQSIAANE 331

[Close]

BLAST of Lcy06g017120 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-12
Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 12   LELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVP 71
            LEL  V+SWAIW ++NK VHN+   P++    W      L     L+D + A S++   P
Sbjct: 1106 LELFFVLSWAIWYNRNKIVHNDS--PLSPSQVW------LMANNTLEDFKKAASLDIIPP 1165

Query: 72   VQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIA 131
              S   W  PP G +K+N D        +  +G+I RDS+G+V  A   YL   F A   
Sbjct: 1166 RHSQIRWEAPPLGIFKVNVDGATSDQGRNSSIGVIIRDSNGLVVAALNKYLPGRFAADQV 1225

Query: 132  ELNVIFEGIRMAISLGCERLLVEFDCLLAINLVS 166
            E   + +GI +A  L   R+++E D L  I  ++
Sbjct: 1226 EALALEQGILLAGDLQLSRVILECDALAVIQALN 1251

[Close]

BLAST of Lcy06g017120 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-12
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 0


Query: 13  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVP 72
           +L A   WAIW D+N   H   +    +R  WI  Y +  S+ Q  K   P  S   SVP
Sbjct: 53  DLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQS---SVP 112

Query: 73  VQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIA 132
             S   W+PP +   K+NSD    S  +S G+GLI RD  G++  A + +L +      A
Sbjct: 113 PPSCR-WLPPRDSAMKVNSDAACRS--TSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFA 172

Query: 133 ELNVIFEGIRMAISLGCERLLVEFDCLLAINLV 165
           E+  I E +++A S    RL+VE DC  AI LV
Sbjct: 173 EIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

[Close]

BLAST of Lcy06g017120 vs. NCBI nr
Match: XP_030926547.1 (uncharacterized protein LOC115953156 [Quercus lobata])

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-12
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 3   INSSCSLADLELVAVMSWAIWNDKNKTVHNE-GIPPINV--RSQWIFDYLKLSKKQILKD 62
           I S  +L DLE+    +WAIW+++N  +H + G+ P++V  R++ + +    S       
Sbjct: 329 ILSHSTLQDLEIFFATAWAIWSNRNNILHKDGGLSPLHVWHRARNVVEEFTCSASWDFDL 388

Query: 63  SRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFA 122
            RPA S            W PPP G +K+N D        S  MG++ RDS+G V  A  
Sbjct: 389 VRPASSS-----------WSPPPPGAFKVNVDGASSEQEGSSSMGVVIRDSNGQVVAALC 448

Query: 123 SYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKK 168
             L   F+A ++E+  + +G+  A  L   R++VE D L  I  V+ K
Sbjct: 449 LPLQSYFSAELSEVFALEQGVLFAQELQLPRIIVESDALTVIQAVNDK 485

[Close]

BLAST of Lcy06g017120 vs. NCBI nr
Match: EAY83065.1 (hypothetical protein OsI_38284 [Oryza sativa Indica Group])

HSP 1 Score: 81.3 bits (199), Expect = 9.0e-12
Identity = 49/165 (29.70%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 17  VMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPA 76
           ++ W IW+++N+  H + I P+ V  ++IF Y+              +  KQ+    R  
Sbjct: 79  MLMWRIWHNRNEITHGKSIAPVAVSQRFIFSYVSSLTTIKQYPQADIIKGKQVAHPDRIR 138

Query: 77  ISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLY 136
           +       V  P  W  P  G+ KLN D ++ ++    G+G + RDS G V  A    + 
Sbjct: 139 LPSRAPPAVSPPRRWEKPSTGWMKLNVDGSFQASDGKGGIGAVLRDSSGNVIFAACGSML 198

Query: 137 VEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD 169
           V  +A  AEL    EGI MA+       +VE DCL   NL+  K+
Sbjct: 199 VCGSAMEAELLACKEGIAMALQWTFLPFIVETDCLEVFNLIQSKE 243

The following BLAST results are available for this feature:

BLAST of Lcy06g017120 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g017120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803NL40	1.0e-13	29.71	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J1BQ49	1.1e-12	36.60	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A2ZKD1	4.4e-12	29.70	RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_...	[more]
A0A5B7A5C8	5.7e-12	33.33	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_021401 PE=4 SV=1	[more]
A0A6J1DX30	1.3e-11	29.87	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Lcy06g017120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030943489.1	3.7e-13	31.55	uncharacterized protein LOC115968280 [Quercus lobata]	[more]
XP_023878301.1	1.4e-12	33.77	uncharacterized protein LOC111990748 [Quercus suber]	[more]
XP_022131661.1	2.4e-12	36.60	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_030926547.1	6.9e-12	31.55	uncharacterized protein LOC115953156 [Quercus lobata]	[more]
EAY83065.1	9.0e-12	29.70	hypothetical protein OsI_38284 [Oryza sativa Indica Group]	[more]

BLAST of Lcy06g017120 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 89..167 e-value: 1.2E-9 score: 38.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 85..168 e-value: 1.4E-6 score: 30.3
None	No IPR available	PANTHER	PTHR47074:SF37	PROTEIN, PUTATIVE-RELATED	coord: 75..167
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 75..167
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 88..168 e-value: 6.92357E-12 score: 57.324
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 84..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017120.1	Lcy06g017120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity