Lcy06g017050 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g017050
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr06: 39144479 .. 39145468 (+)
RNA-Seq Expression	Lcy06g017050
Synteny	Lcy06g017050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTGAGAAATGTGGTTACCTGGAATGCTATGATTTCGGGATTGGCTTATCAAGGCCGGTACAGGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGCACAGGGCTCCAGCCGGACGAGGTGACCTTAGTGGGGGTTCTGAACTCTTGCGCAAACCTTGGAGTTCTTGAGCTGGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTGGCTGATAAGTTTGTTGGGAATGCGCTTGTTGATATGTATGCAAAATGTGGAAGAATAGACGAAGCTTTTAGGGTGTTTGAGAGCATGAAAACGAGGGATGTGTATTCATACACAGCCATGATTGTTGGGTTGGCCTTGCATGGTGAAGCAAATTGGGCATTCGATGTCTTCTCTAAGATGTTAAGAGTCGGTATCGAGCCAAACAAAGTAACATTCTTAGGTCTTCTTATGGCTTGCAGCCATGGCGGATTGGTTGCTGAAGGCAAGAAGTACTTTATTGACATGTCAAATACATATAAGCTTAGACCTCAAGCGGAGCATTATGGCTGCATGATTGACCTTCTTGGTCGTGCAGGGTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTTGCTTTGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCGACCTCGGTGAAAGTGTGATGCAAAAATTGATGGAGTTAGATCCTGATGAAGATGGTTCCTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATTGAAATTAAGAAAGACAATGAAAAGTAAGAAGATGAGAAAGACTCCTGGATGTAGTTTGATCGAAGTTGATGGTGTAGCTCATGAGTTTCGTAAGGGTGACAAGTCACATCCAAAAAGCAAAGTTATATATTCAGTATTGGAAGGAATGGCTAGTCATTTAAAGGGCTATGAGATTGTGGAACATAGTACATTTTCCTGA

mRNA sequence

ATGCCTCTGAGAAATGTGGTTACCTGGAATGCTATGATTTCGGGATTGGCTTATCAAGGCCGGTACAGGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGCACAGGGCTCCAGCCGGACGAGGTGACCTTAGTGGGGGTTCTGAACTCTTGCGCAAACCTTGGAGTTCTTGAGCTGGGGTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTTGCTTTGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCGACCTCGGTGAAAGTGTGATGCAAAAATTGATGGAGTTAGATCCTGATGAAGATGGTTCCTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATTGAAATTAAGAAAGACAATGAAAAGTAAGAAGATGAGAAAGACTCCTGGATGTAGTTTGATCGAAGTTGATGGTGTAGCTCATGAGTTTCGTAAGGGTGACAAGTCACATCCAAAAAGCAAAGTTATATATTCAGTATTGGAAGGAATGGCTAGTCATTTAAAGGGCTATGAGATTGTGGAACATAGTACATTTTCCTGA

Coding sequence (CDS)

ATGCCTCTGAGAAATGTGGTTACCTGGAATGCTATGATTTCGGGATTGGCTTATCAAGGCCGGTACAGGGAAGCTCTGGACATGTTCCGTAGGATGCAAAGCACAGGGCTCCAGCCGGACGAGGTGACCTTAGTGGGGGTTCTGAACTCTTGCGCAAACCTTGGAGTTCTTGAGCTGGGGTTAGTGAAGGAAGCAGAAGAGATTATCCACAGCATGGAAATCAGGCCAGATGCCTTTGCTTTGGGAGCTCTATTAGGGGCTTGCAGGATTCATGGAAATGTCGACCTCGGTGAAAGTGTGATGCAAAAATTGATGGAGTTAGATCCTGATGAAGATGGTTCCTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATTGAAATTAAGAAAGACAATGAAAAGTAAGAAGATGAGAAAGACTCCTGGATGTAGTTTGATCGAAGTTGATGGTGTAGCTCATGAGTTTCGTAAGGGTGACAAGTCACATCCAAAAAGCAAAGTTATATATTCAGTATTGGAAGGAATGGCTAGTCATTTAAAGGGCTATGAGATTGTGGAACATAGTACATTTTCCTGA

Protein sequence

MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELGLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLKGYEIVEHSTFS

Homology

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BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-44
Identity = 86/209 (41.15%), Postives = 129/209 (61.72%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL---- 63
           +++ +WNAMI G A  GR   + D+F RM+  G+QPD++T VG+L++C++ G+L+L    
Sbjct: 433 KSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492

Query: 64  ---------------------------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHG 123
                                      GL KEAEE+I+ ME+ PD     +LL AC++HG
Sbjct: 493 FRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552

Query: 124 NVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLI 182
           NV+LGES  + L++++P+  GSY+L++N+Y+S  RW +  K R  +  K M+K PGCS I
Sbjct: 553 NVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612

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BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-39
Identity = 82/217 (37.79%), Postives = 128/217 (58.99%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLE-- 60
           +P  NV+TW+AMI+G A  G+  +A+D F +M+  G++P +V  + +L +C++ G++E  
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 61  -----------------------------LGLVKEAEEIIHSMEIRPDAFALGALLGACR 120
                                         GL+ EAEE I +M I+PD     ALLGACR
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 121 IHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGC 180
           + GNV++G+ V   LM++ P + G+Y+ ++N+Y+S   W +  ++R  MK K +RK PGC
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 181 SLIEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           SLI++DGV HEF   D SHPK+K I S+L  ++  L+
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

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BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-39
Identity = 75/214 (35.05%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLE----- 63
           R+ V+WNAMI G A  G   EAL++FR M  +G +PD +T++GVL++C + G +E     
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHY 515

Query: 64  --------------------------LGLVKEAEEIIHSMEIRPDAFALGALLGACRIHG 123
                                      G ++EA+ +I  M ++PD+   G+LL AC++H 
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHR 575

Query: 124 NVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLI 183
           N+ LG+ V +KL+E++P   G Y+L++N+Y+ + +W+D + +RK+M+ + + K PGCS I
Sbjct: 576 NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635

Query: 184 EVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           ++ G  H F   DKSHP+ K I+S+L+ + + ++
Sbjct: 636 KIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669

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BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot
Match: Q9SN85 (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 83/215 (38.60%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG--- 63
           RNVV+W A+ISGLA  G  +EA++ F  M   G+ P+E TL G+L++C++ G++  G   
Sbjct: 281 RNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMF 340

Query: 64  -----------------------------LVKEAEEIIHSMEIRPDAFALGALLGACRIH 123
                                        L+ +A  +I SME++PD+     LLGACR+H
Sbjct: 341 FDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVH 400

Query: 124 GNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSL 183
           G+V+LGE V+  L+EL  +E G Y+L+ N YS+V +W+   +LR  MK K++   PGCS 
Sbjct: 401 GDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSA 460

Query: 184 IEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           IE+ G  HEF   D SHP+ + IY +L  +   LK
Sbjct: 461 IELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLK 495

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BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.1e-38
Identity = 80/217 (36.87%), Postives = 127/217 (58.53%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG 60
           MP RNVV+W++MI+ L+  G   +AL +F RM+   ++P+EVT VGVL  C++ G++E G
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 61  -------------------------------LVKEAEEIIHSMEIRPDAFALGALLGACR 120
                                          L++EA E+I SM +  +    G+L+ ACR
Sbjct: 465 KKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACR 524

Query: 121 IHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGC 180
           IHG ++LG+   ++++EL+PD DG+ +LM+N+Y+   RW+D   +R+ M+ K + K  G 
Sbjct: 525 IHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGL 584

Query: 181 SLIEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           S I+ +G +HEF  GDK H +S  IY+ L+ + S LK
Sbjct: 585 SRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

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BLAST of Lcy06g017050 vs. ExPASy TrEMBL
Match: A0A1S4DUW1 (pentatricopeptide repeat-containing protein At4g21065 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486837 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.1e-94
Identity = 170/196 (86.73%), Postives = 182/196 (92.86%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG 60
           MP+RNVVTWNAMISGLAYQGRYREALD FR MQ+ G++PDEVTLVGVLNSCANLGVLE+G
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG 333

Query: 61  LVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELDPDEDGSYILMTN 120
           LVKEAEEI+H MEIRPD FA GALLGACRIHGNVD+GESVMQKL E+DPDEDG+YILMTN
Sbjct: 334 LVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTN 393

Query: 121 LYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDKSHPKSKVIYSVLEG 180
           LYSSVHRWKDA KLRKTMK KKMRKTPGCS IEVDGV HEFRKGDKSHP+SKVIY VLEG
Sbjct: 394 LYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEG 453

Query: 181 MASHLKGYEIVEHSTF 197
           +A+HLK Y IVEHSTF
Sbjct: 454 IATHLKSYGIVEHSTF 469

[Close]

BLAST of Lcy06g017050 vs. ExPASy TrEMBL
Match: A0A1S4DVM9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486837 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.5e-84
Identity = 170/270 (62.96%), Postives = 182/270 (67.41%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP+RNVVTWNAMISGLAYQGRYREALD FR MQ+ G++PDEVTLVGVLNSCANLGVLE+ 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIA 333

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 334 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQS 393

Query: 121 -------------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLME 180
                        GLVKEAEEI+H MEIRPD FA GALLGACRIHGNVD+GESVMQKL E
Sbjct: 394 EHYGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE 453

Query: 181 LDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDK 197
           +DPDEDG+YILMTNLYSSVHRWKDA KLRKTMK KKMRKTPGCS IEVDGV HEFRKGDK
Sbjct: 454 IDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDK 513

[Close]

BLAST of Lcy06g017050 vs. ExPASy TrEMBL
Match: A0A6J1G7N7 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451544 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.8e-79
Identity = 176/329 (53.50%), Postives = 184/329 (55.93%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP+RNVVTWNAMI GLAYQGRY+EALDMFRRMQ TG +PDEVTLVGVLNSCANLGVLEL 
Sbjct: 282 MPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELG 341

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 342 KWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFEGMKRRDVYSYTAMIVGLALH 401

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 402 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKCFFDMSNTYKLRPQAEH 461

Query: 181 -----------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELD 198
                      GLVKEAEEIIHSMEIRPDAFA GALLGACRIHGNV+LGESVMQKLM LD
Sbjct: 462 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 521

[Close]

BLAST of Lcy06g017050 vs. ExPASy TrEMBL
Match: A0A0A0LFA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 170/328 (51.83%), Postives = 183/328 (55.79%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP++NVVTWNAMISGLAYQGRYREALD FR MQ  G++PDEVTLVGVLNSCANLGVLE+ 
Sbjct: 361 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 420

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 421 KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALH 480

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 481 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 540

Query: 181 -----------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELD 197
                      GLVKEAEEIIH MEIRPD FA GALLGACRIHGNVD+GESVMQKL ELD
Sbjct: 541 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 600

[Close]

BLAST of Lcy06g017050 vs. ExPASy TrEMBL
Match: A0A5A7UKB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006110 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.5e-77
Identity = 170/328 (51.83%), Postives = 182/328 (55.49%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP+RNVVTWNAMISGLAYQGRYREALD FR MQ+ G++PDEVTLVGVLNSCANLGVLE+ 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG 333

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 334 KWVHAYMRRNHILADEFVGNALLDMYAKCGSIDEAFRVFESMKKRDVYSYTAMIVGLALH 393

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 394 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEH 453

Query: 181 -----------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELD 197
                      GLVKEAEEI+H MEIRPD FA GALLGACRIHGNVD+GESVMQKL E+D
Sbjct: 454 YGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEID 513

[Close]

BLAST of Lcy06g017050 vs. NCBI nr
Match: XP_011652147.2 (pentatricopeptide repeat-containing protein At4g21065 isoform X3 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 6.5e-94
Identity = 170/196 (86.73%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG 60
           MP++NVVTWNAMISGLAYQGRYREALD FR MQ  G++PDEVTLVGVLNSCANLGVLE+G
Sbjct: 275 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 334

Query: 61  LVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELDPDEDGSYILMTN 120
           LVKEAEEIIH MEIRPD FA GALLGACRIHGNVD+GESVMQKL ELDPDE+G+YILMTN
Sbjct: 335 LVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTN 394

Query: 121 LYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDKSHPKSKVIYSVLEG 180
           LYSSVHRWKDALK+RKTMK+KKMRKTPGCSLIEVDGV HEFRKGDKSHP+SKVIY VLEG
Sbjct: 395 LYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEG 454

Query: 181 MASHLKGYEIVEHSTF 197
           +A+HLK Y I EHSTF
Sbjct: 455 IATHLKSYGIEEHSTF 470

[Close]

BLAST of Lcy06g017050 vs. NCBI nr
Match: XP_016899771.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21065 isoform X2 [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93
Identity = 170/196 (86.73%), Postives = 182/196 (92.86%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG 60
           MP+RNVVTWNAMISGLAYQGRYREALD FR MQ+ G++PDEVTLVGVLNSCANLGVLE+G
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG 333

Query: 61  LVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELDPDEDGSYILMTN 120
           LVKEAEEI+H MEIRPD FA GALLGACRIHGNVD+GESVMQKL E+DPDEDG+YILMTN
Sbjct: 334 LVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTN 393

Query: 121 LYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDKSHPKSKVIYSVLEG 180
           LYSSVHRWKDA KLRKTMK KKMRKTPGCS IEVDGV HEFRKGDKSHP+SKVIY VLEG
Sbjct: 394 LYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEG 453

Query: 181 MASHLKGYEIVEHSTF 197
           +A+HLK Y IVEHSTF
Sbjct: 454 IATHLKSYGIVEHSTF 469

[Close]

BLAST of Lcy06g017050 vs. NCBI nr
Match: XP_016899770.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 170/270 (62.96%), Postives = 182/270 (67.41%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP+RNVVTWNAMISGLAYQGRYREALD FR MQ+ G++PDEVTLVGVLNSCANLGVLE+ 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIA 333

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 334 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQS 393

Query: 121 -------------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLME 180
                        GLVKEAEEI+H MEIRPD FA GALLGACRIHGNVD+GESVMQKL E
Sbjct: 394 EHYGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE 453

Query: 181 LDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLIEVDGVAHEFRKGDK 197
           +DPDEDG+YILMTNLYSSVHRWKDA KLRKTMK KKMRKTPGCS IEVDGV HEFRKGDK
Sbjct: 454 IDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDK 513

[Close]

BLAST of Lcy06g017050 vs. NCBI nr
Match: XP_031737802.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81
Identity = 170/295 (57.63%), Postives = 183/295 (62.03%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP++NVVTWNAMISGLAYQGRYREALD FR MQ  G++PDEVTLVGVLNSCANLGVLE+ 
Sbjct: 275 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 334

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 335 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 394

Query: 121 --------------------------------------GLVKEAEEIIHSMEIRPDAFAL 180
                                                 GLVKEAEEIIH MEIRPD FA 
Sbjct: 395 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 454

Query: 181 GALLGACRIHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSK 197
           GALLGACRIHGNVD+GESVMQKL ELDPDE+G+YILMTNLYSSVHRWKDALK+RKTMK+K
Sbjct: 455 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 514

[Close]

BLAST of Lcy06g017050 vs. NCBI nr
Match: KAG7027741.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.2 bits (783), Expect = 2.0e-79
Identity = 177/329 (53.80%), Postives = 185/329 (56.23%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL- 60
           MP+RNVVTWNAMISGLAYQGRY+EALDMFRRMQ TG +PDEVTLVGVLNSCANLGVLEL 
Sbjct: 122 MPVRNVVTWNAMISGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELG 181

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 182 KWVHAYMRRNHILTDKFVGNALLDMYAKCGRIDEAFRVFESMKRRDVYSYTAMIVGLALH 241

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 242 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEH 301

Query: 181 -----------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHGNVDLGESVMQKLMELD 198
                      GLVKEAEEIIHSMEIRPDAFA GALLGACRIHGNV+LGESVMQKLM LD
Sbjct: 302 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 361

[Close]

BLAST of Lcy06g017050 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 86/209 (41.15%), Postives = 129/209 (61.72%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLEL---- 63
           +++ +WNAMI G A  GR   + D+F RM+  G+QPD++T VG+L++C++ G+L+L    
Sbjct: 433 KSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492

Query: 64  ---------------------------GLVKEAEEIIHSMEIRPDAFALGALLGACRIHG 123
                                      GL KEAEE+I+ ME+ PD     +LL AC++HG
Sbjct: 493 FRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552

Query: 124 NVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLI 182
           NV+LGES  + L++++P+  GSY+L++N+Y+S  RW +  K R  +  K M+K PGCS I
Sbjct: 553 NVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612

[Close]

BLAST of Lcy06g017050 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-40
Identity = 82/217 (37.79%), Postives = 128/217 (58.99%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLE-- 60
           +P  NV+TW+AMI+G A  G+  +A+D F +M+  G++P +V  + +L +C++ G++E  
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 61  -----------------------------LGLVKEAEEIIHSMEIRPDAFALGALLGACR 120
                                         GL+ EAEE I +M I+PD     ALLGACR
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 121 IHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGC 180
           + GNV++G+ V   LM++ P + G+Y+ ++N+Y+S   W +  ++R  MK K +RK PGC
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 181 SLIEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           SLI++DGV HEF   D SHPK+K I S+L  ++  L+
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

[Close]

BLAST of Lcy06g017050 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-40
Identity = 75/214 (35.05%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLE----- 63
           R+ V+WNAMI G A  G   EAL++FR M  +G +PD +T++GVL++C + G +E     
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHY 515

Query: 64  --------------------------LGLVKEAEEIIHSMEIRPDAFALGALLGACRIHG 123
                                      G ++EA+ +I  M ++PD+   G+LL AC++H 
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHR 575

Query: 124 NVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSLI 183
           N+ LG+ V +KL+E++P   G Y+L++N+Y+ + +W+D + +RK+M+ + + K PGCS I
Sbjct: 576 NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635

Query: 184 EVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           ++ G  H F   DKSHP+ K I+S+L+ + + ++
Sbjct: 636 KIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669

[Close]

BLAST of Lcy06g017050 vs. TAIR 10
Match: AT3G47530.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 9.8e-40
Identity = 83/215 (38.60%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 4   RNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG--- 63
           RNVV+W A+ISGLA  G  +EA++ F  M   G+ P+E TL G+L++C++ G++  G   
Sbjct: 281 RNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMF 340

Query: 64  -----------------------------LVKEAEEIIHSMEIRPDAFALGALLGACRIH 123
                                        L+ +A  +I SME++PD+     LLGACR+H
Sbjct: 341 FDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVH 400

Query: 124 GNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGCSL 183
           G+V+LGE V+  L+EL  +E G Y+L+ N YS+V +W+   +LR  MK K++   PGCS 
Sbjct: 401 GDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSA 460

Query: 184 IEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           IE+ G  HEF   D SHP+ + IY +L  +   LK
Sbjct: 461 IELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLK 495

[Close]

BLAST of Lcy06g017050 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39
Identity = 80/217 (36.87%), Postives = 127/217 (58.53%), Query Frame = 0


Query: 1   MPLRNVVTWNAMISGLAYQGRYREALDMFRRMQSTGLQPDEVTLVGVLNSCANLGVLELG 60
           MP RNVV+W++MI+ L+  G   +AL +F RM+   ++P+EVT VGVL  C++ G++E G
Sbjct: 405 MPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464

Query: 61  -------------------------------LVKEAEEIIHSMEIRPDAFALGALLGACR 120
                                          L++EA E+I SM +  +    G+L+ ACR
Sbjct: 465 KKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACR 524

Query: 121 IHGNVDLGESVMQKLMELDPDEDGSYILMTNLYSSVHRWKDALKLRKTMKSKKMRKTPGC 180
           IHG ++LG+   ++++EL+PD DG+ +LM+N+Y+   RW+D   +R+ M+ K + K  G 
Sbjct: 525 IHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGL 584

Query: 181 SLIEVDGVAHEFRKGDKSHPKSKVIYSVLEGMASHLK 187
           S I+ +G +HEF  GDK H +S  IY+ L+ + S LK
Sbjct: 585 SRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

The following BLAST results are available for this feature:

BLAST of Lcy06g017050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	2.2e-44	41.15	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FI80	2.1e-39	37.79	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
Q9SIT7	4.7e-39	35.05	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX...	[more]
Q9SN85	1.4e-38	38.60	Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana OX...	[more]
O23337	3.1e-38	36.87	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lcy06g017050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUW1	9.1e-94	86.73	pentatricopeptide repeat-containing protein At4g21065 isoform X2 OS=Cucumis melo...	[more]
A0A1S4DVM9	6.5e-84	62.96	pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 ...	[more]
A0A6J1G7N7	4.8e-79	53.50	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
A0A0A0LFA5	1.2e-77	51.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1	[more]
A0A5A7UKB6	3.5e-77	51.83	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy06g017050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652147.2	6.5e-94	86.73	pentatricopeptide repeat-containing protein At4g21065 isoform X3 [Cucumis sativu...	[more]
XP_016899771.1	1.9e-93	86.73	PREDICTED: pentatricopeptide repeat-containing protein At4g21065 isoform X2 [Cuc...	[more]
XP_016899770.1	1.4e-83	62.96	PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic ...	[more]
XP_031737802.1	3.7e-81	57.63	pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 ...	[more]
KAG7027741.1	2.0e-79	53.80	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Lcy06g017050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	1.6e-45	41.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	1.5e-40	37.79	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G13600.1	3.4e-40	35.05	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G47530.1	9.8e-40	38.60	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G14820.1	2.2e-39	36.87	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..174 e-value: 1.4E-26 score: 95.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 12..133
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 7..41 e-value: 2.6E-11 score: 41.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 4..53 e-value: 2.0E-14 score: 53.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 114..142 e-value: 1.4 score: 9.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 5..39 score: 13.800334
None	No IPR available	PANTHER	PTHR47928:SF107	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 60..195
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..60
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 60..195
None	No IPR available	PANTHER	PTHR47928:SF107	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g017050.1	Lcy06g017050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding