Lcy06g016990 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g016990
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein CHUP1, chloroplastic-like
LocationChr06: 39021489 .. 39026764 (-)
RNA-Seq ExpressionLcy06g016990
SyntenyLcy06g016990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAGAGGTAAAGAAGAAGAAAAAGAAGGTGACTGGCCGACGATGGCGGTCGCCGGCATTGAAAACGGAGGAGGGAGTCCCTCCCCGTTTCATTTTTTTTTTTAAAAAAAAAAGTGACCCCTGCAGCCGCCGCCCAACCGACGAGAGGCGGCTGTCGGCTGCCGACGCTAGGATTAGGAAAGAAGATGATGGAGAAGAAGATGAGAAGGGATATGGAGAAGAAGAGGGAAGAAGAAGGAGAAAATAAATAATAATAATAAAATATTTTATTAAAAAAATGAAAAAATAATTTTTTTTATTAAAAAAAAGGAGTGTCGGAGTAAAATGGTTGAGTTTGAAAACTCAGGGATCATAAAGTGTAACCTAATCCAAATCTCAGGACCAAAATGTATTTTTCATAAATGTTTCTCCCATTAATTAAGCACTTATCCAGCCTGCAACTATGTGTTCGTTATTAAATAATTTAGAGATTTGTTAGGAAGCCAAGAGTTAAAACTTATAATTTAAGTTAATTTCAAAAAAAAAAAAAAGAAAAAAAGAAAAAACTTATAATTTAAGTTAAAAAAGAAACTACAAATAAACACGTGGCTAAAGTATTTACACACGTGTTAAAAACATCAACCACGAAGGAAGAACGTAAGTTTTATGGATTAATATATATATACATATACTAAACGTTACAATTACACTGCATGCATGCATTCGACTCCAAGCGTCATTTATTTATTGTCATTTGTCAACAAACTTCACGTCATATACAAAACAAGAAACGACACGAAACGAAGATGGAGACGACAAGTCGACTACCAATCTCAAGTCTCAACAACGAAATTAACGAACAACGGAACAGGTTGATCAGATATTCAGGGAGATGCCGGCAGATCAGTCTTCCTGTGGTTCGATACTCCGCGGTCGCCCCACCCGCCACCACTTCCAGACCCGGACCCAGACCCAGAAGCCGAACCGTCACCACTGCTCGAACCGCTTCCCGAGCCTCCTCCTCCGCCACCACCCCCGCCGCCACCGTTGGGCTGCTGCACGGCCGCAAGGCAGCTGCTCATCAAGAAGAGTATTAGAAAGCACAAGCACGCGAAAAGCTTCGACGGAGGCGCCATATTAGGGAAAAGGAAATGTTTTCAGGTGAAGGCTGAAGGGAAGGTTTTACTGTTATTGTTATTTATAGAGAGTGTTGGGAGTTTGGGTGTTTGGCATTTGTTGAGCTCGCTGATTGCCAAGGAGGCTGCGGACGTGCTGCCGATGTGGCGGGCTTTTGGCCATTCAACCCGACACGCAAATGCCTTGCGCGGCCAGAGATATGGGAATCAGTTCCGCAATAATGGAGTCCCGAGCAGTTTTATACATGCGACTGTGAGAGAGAAACTGAATATATATATATATATATATATATATCTTGAATTTCTATCGGGTGATTTTTTTTAGTACAACAACATTTGGAATGGGAGATTCGAATCTCTCATCTCTTGATCGAGAGTACATGTCAATTACCACTGAGATATACTCACTTTGACAATTTCTATCACGTGGTTATTATTAGATGCATGTAGATTTTCCAATCCACATGTCAGGATCATTGAGATACAAACACTTTGGGTGGTCTCGTTAAATAATTTTTAACATTTCTTCATGGTCAATAAATTTTCTATGTTTTTTTTGTTAAATTAAAATTTAAGTATGAGATATGTGTCAAATAGATTTTCGAACTTGAATAGGTTTTTGAAATTAAAAAGTGTCTAAATGTGGATTTATGAATTTTCAATTTTGTCTGACTCTTTAATATTTTTTAAAACTTTACGAATCTATTAGACACAAAATTGAAAATTCAGCATTTTATTAGATACAAAATGCAATTTTATGTGTAAAAGATTAGTTGGTTTTTAAGAGATGTTGAACATATTTAAGATGATCTATTAGACATAAAATTAAAAATTTAACTATAACCTAATTAGTTTTTTGTTATGTTGATAGTCTGCCAGTCAAATTTAATAATTATAACCACAAAAAGGTTATTGAATATGACTTCTCGATAATCATTTCCATAGCATATTTGTCTTGAGTCCAATTTTTTTTTTTTTTTTTGCCCTTCCTTTCTCTTTTAGTTCAATGATGGAGTTAAAATTAGAATCTCTTTTTTTTTTTTTTTTTTTTTTTGTCAAATATATATTATTTTTACTAGGAGAAATTATTAGGTTCTCCTCGTATAATTATAATGTTGGATGTAAGAGAGAAAAATTGTAAAAGTATCTTGATTTTGTATATCCAATGGTATTAGAGGATAGATAAATTTAAAGATATACATCCGATGGTTTTAAAGGAGTCTCATTGCACCTAGAACACCTAATAATTTGCCCTCAACTAGTTGACTGTTACACTCCAAGTTGGCCCTTTTGTCCAAATGTCCAAAAATTTGTGAAAAATGATTTTCGAATAAAATCTGTTTTTCTATAAGCATTTATGGAAAGTTGATAATTTAAATTGTGTTTAGTATAGCTTATTAAGTTATGTGATTAAAAAATGGATTTTAAAAATATCTTAATAAATTGAAAGTTCTTTTAAAAATTTTGGATTAATTTTAAATCCTTTTTAACAAACATTTGTGGATTATCCAAAAATTACTTAGTGATTACTTGAAGATCCTCAAAAATATGAAATGAGAAATAAAAATAAATTTATGATTAGTAGAATCAAATCAATATAGTGTCCCAAACAAATTTGTTATTTAAAATCTTTTGAAAAAGGTAAGATATAATAATATTTTTTTATTAAAAAATAAGCATATAGTTTATTTATTTATTATTTTGAGAAAGATAAGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGAAGATAGCGTAGTGTTTAAACTAGATATTTTTTAATTATCAATAGATTCTGTATTTTTTTGTCACAAGGCTTATAGCATAGTGAGTGTCACGCTAGCAAGCTGTTATCCAAGTTTTGGGATTGAGCCTTTATTGTTGACAAATTGTAAATGTTAATATTTTTTAACAAAATAAATTAAAATATATATCACTTTGTTATTAATTTAAAAATATATTAAACGTTTTTAATTTAAAATAAATAATTTAGACTTTTTGTATTGTGTAAATTTACATATAAACTCTATTTAAAAAATATTTAAATTTATAATATATAAAAAGAAGTTTAGAAGAGAAAAATCCAATTTCTTCTCTTTGTCATTTTTAATTAGTATTATTCAATATAATTATTAATAATAAAATTAATAGAGTATTACGATAGAAAAATAAAATAATAACATTAAACCAAGTAATCAAATGAAATTGTTGCATTATTTATATAACGATATCAAAATATTAATATATTTATTTAATAAATTAATTAATACAAATTTTTTGCTTTTGTATTATGTAGAAGAATTTTTCATGAAAATGATGATAATATAAAAATAATAAAATAAATTTTTTTGTTTGTAGAAATGAAAAACTATGCAAGCTGGAAGATTTTCCTTTGCTTTCTTTATTTTTCAGCTTTTGGCAAATGGCCATATTTATACAAGTTCAGTACCAACCCAAATATAGAAAGAAGTTATAGAAGTAAGCTAACCCATACACGTGTCTCTCAATGAGAGAATAAATAACCAACAATAAAAGACTAAAACAAATTTCTGTTAACAAAGGATTACAAGGTGGAATGTTGTTGGGGAGATAGATTCTAGATTTCGGTCTTCTTCCTTCACATGTAGTACCCGACTTTCGAAAATGTATGATAAGTAAAATAAAATTGAGTTATTTGTCTTTTAACAATATGTGAGGCAAAGGATTTGAATATCGACTTCTTAATTGAGGGTACAAACTTTATGTCAGATAGTTATGCTCTTGTTGGCAAACAAAATTGATTTTACTATTCTTTGTTATTTTTAAATTAAAACTATCATTTTGTAATAAAAGAAAGAGACACCAAACTACTATTGCTTTTTAATTTAAACATGAACTAAAAAATTATATACTAGGACAAAATAGTACACTTTTGATTTCTTAGGCGTGGGTTGGTGTTTATTTGATTCTTGAAGTTACAAAATAAACATTTTTAGTTTTTAAAGTTTGTAAAATGGTCTTAATTGGTCCCTAAGATTAGTTGACCAACTTAATATGATTGTTAAATTGGTGATTAGACTTTGTTAAGATGACATTTTTAAATGAGTTAGGGCAAAACTGTTAATTTTATATTATTTTTAATCTATATTGCTCTTCTCACTCAGTCTTTTTTTCATCTTCTCTCTCATTCTCCCTCATTCTCTTTAACTTTATTGTCATAGTCCTCTCTTTTTCTCATCTTCTTTTCTCTCTTCTTTTCTTCTATTTCAGCTCCCCATCCCACCTGATCTCTATTTCCTCACTCAAAAAGAGTTGCAGAAAAATAAAAAAAGAAGTTTATAATAAAAAAAGGGAAAAATACACTTTTAGTCCCTCAAGTTTGGGTTAGGTTTCATTTGGTCCCTGAGTTTTCAATCTCAACAATTTAGTCCCTGAAGTTTGGTTTTAGTTTCATTTTAGTCCTTCCATCCATTTTTCCGTTAAAACCTAACGGTTTGCTGACGTGGCACTGTTGAGTGAGAAATTTCGGCCAATCACAAATTGTCACGTCATTAATTTGAATTAATGATAAAATAAATTTGGGACCAATTACAAATTTACATGTGTCCCTAAATTAAATTAATAGACATTAAAATTCGGCAAATCAAACAATGCCACTTGTCTATTATTGATCTATCAGATGACATAAGCCGAGTCCAATCAAATTATGCCACGTGGCAATTGGACCCGAGACTAATGTGACCCGAGATCATTGAAGAAATTGGGCTAAATTAAAATAATCAAATTTTATTAAAAATGAGTTGGATTAAAGCCCAAATATAGCCTAAGCCCAAAGGTTGGGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTTTGGGCATTCAGACAGAGTCAGAGAAGCCAAAGCCCAGAGCATTCTCCCAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCGTCAATCTCAAGACTCAGAAGATCCAACGACTGGAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACCTTCCTCCATCTGAGATCAAGCTCGCCAGCCCTCAGATCAGACTCTACATTTTGA

mRNA sequence

ATGGAGAAAAGAGATATTCAGGGAGATGCCGGCAGATCAGTCTTCCTGTGGTTCGATACTCCGCGGTCGCCCCACCCGCCACCACTTCCAGACCCGGACCCAGACCCAGAAGCCGAACCGTCACCACTGCTCGAACCGCTTCCCGAGCCTCCTCCTCCGCCACCACCCCCGCCGCCACCGTTGGGCTGCTGCACGGCCGCAAGGCAGCTGCTCATCAAGAAGAGTATTAGAAAGCACAAGCACGCGAAAAGCTTCGACGGAGGCGCCATATTAGGGAAAAGGAAATGTTTTCAGGTGAAGGCTGAAGGGAAGGTTTTACTGTTATTGTTATTTATAGAGAGTGTTGGGAGTTTGGGTGTTTGGCATTTGTTGAGCTCGCTGATTGCCAAGGAGGCTGCGGACGTGCTGCCGATGTGGCGGGCTTTTGGCCATTCAACCCGACACGCAAATGCCTTGCGCGGCCAGAGATATGGGAATCAGTTCCGCAATAATGGAGTCCCGAGCAGTTTTATACATGCGACTAGTCAGAGAAGCCAAAGCCCAGAGCATTCTCCCAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCGTCAATCTCAAGACTCAGAAGATCCAACGACTGGAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACCTTCCTCCATCTGAGATCAAGCTCGCCAGCCCTCAGATCAGACTCTACATTTTGA

Coding sequence (CDS)

ATGGAGAAAAGAGATATTCAGGGAGATGCCGGCAGATCAGTCTTCCTGTGGTTCGATACTCCGCGGTCGCCCCACCCGCCACCACTTCCAGACCCGGACCCAGACCCAGAAGCCGAACCGTCACCACTGCTCGAACCGCTTCCCGAGCCTCCTCCTCCGCCACCACCCCCGCCGCCACCGTTGGGCTGCTGCACGGCCGCAAGGCAGCTGCTCATCAAGAAGAGTATTAGAAAGCACAAGCACGCGAAAAGCTTCGACGGAGGCGCCATATTAGGGAAAAGGAAATGTTTTCAGGTGAAGGCTGAAGGGAAGGTTTTACTGTTATTGTTATTTATAGAGAGTGTTGGGAGTTTGGGTGTTTGGCATTTGTTGAGCTCGCTGATTGCCAAGGAGGCTGCGGACGTGCTGCCGATGTGGCGGGCTTTTGGCCATTCAACCCGACACGCAAATGCCTTGCGCGGCCAGAGATATGGGAATCAGTTCCGCAATAATGGAGTCCCGAGCAGTTTTATACATGCGACTAGTCAGAGAAGCCAAAGCCCAGAGCATTCTCCCAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCGTCAATCTCAAGACTCAGAAGATCCAACGACTGGAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACCTTCCTCCATCTGAGATCAAGCTCGCCAGCCCTCAGATCAGACTCTACATTTTGA

Protein sequence

MEKRDIQGDAGRSVFLWFDTPRSPHPPPLPDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPLGCCTAARQLLIKKSIRKHKHAKSFDGGAILGKRKCFQVKAEGKVLLLLLFIESVGSLGVWHLLSSLIAKEAADVLPMWRAFGHSTRHANALRGQRYGNQFRNNGVPSSFIHATSQRSQSPEHSPKVQSLQKSESPENSEDPRFRIRQSQDSEDPTTGRLQRINRFFIKIQVEDSTFLHLRSSSPALRSDSTF
Homology
[Close]
BLAST of Lcy06g016990 vs. ExPASy TrEMBL
Match: E5GBX5 (Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.3e-11
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 30 PDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPLGCCTAARQLLIKKSIRKHKHAKSFDGGA 89
          PDPDPDPEAEP PLL+ LP+ PPPPPPPPPPLG CTAAR LLI K ++K K  KS +G A
Sbjct: 2  PDPDPDPEAEPPPLLDALPD-PPPPPPPPPPLGRCTAARLLLIIKKMKKQKQRKSLEGEA 61

Query: 90 ILG 93
          I+G
Sbjct: 62 IVG 63

[Close]
BLAST of Lcy06g016990 vs. ExPASy TrEMBL
Match: A0A6J1D0H8 (protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 17 WFDTPRSPHPPPLPDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPL 62
          W D+P  PHPPPLPDPDP+PEAEP PLL+P P PPPPPPPPPPPL
Sbjct: 3  WRDSPLEPHPPPLPDPDPEPEAEPEPLLDPPPPPPPPPPPPPPPL 47

[Close]
BLAST of Lcy06g016990 vs. NCBI nr
Match: KAG6580848.1 (hypothetical protein SDJN03_20850, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-12
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 0 

Query: 15  FLWF------DTPRSPHPPPLPDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPLGCCTAAR 74
           FLWF      DT   P P PLPDPDPDPEAEP PLL+PLPE PPPPPPPPPPLGCCTAAR
Sbjct: 82  FLWFKPIAWGDTLLEPDPLPLPDPDPDPEAEPEPLLDPLPE-PPPPPPPPPPLGCCTAAR 141

Query: 75  QLLIK-------KSIRKHKHAKSFD 87
            LL+        K +RK K  + ++
Sbjct: 142 LLLLLLLLLLLIKKMRKQKRREYWE 165

[Close]
BLAST of Lcy06g016990 vs. NCBI nr
Match: ADN33975.1 (hypothetical protein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-10
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 30 PDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPLGCCTAARQLLIKKSIRKHKHAKSFDGGA 89
          PDPDPDPEAEP PLL+ LP+ PPPPPPPPPPLG CTAAR LLI K ++K K  KS +G A
Sbjct: 2  PDPDPDPEAEPPPLLDALPD-PPPPPPPPPPLGRCTAARLLLIIKKMKKQKQRKSLEGEA 61

Query: 90 ILG 93
          I+G
Sbjct: 62 IVG 63

[Close]
BLAST of Lcy06g016990 vs. NCBI nr
Match: XP_022147153.1 (protein CHUP1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 17 WFDTPRSPHPPPLPDPDPDPEAEPSPLLEPLPEPPPPPPPPPPPL 62
          W D+P  PHPPPLPDPDP+PEAEP PLL+P P PPPPPPPPPPPL
Sbjct: 3  WRDSPLEPHPPPLPDPDPEPEAEPEPLLDPPPPPPPPPPPPPPPL 47

The following BLAST results are available for this feature:
BLAST of Lcy06g016990 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g016990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBX57.3e-1171.43Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV... [more]
A0A6J1D0H85.8e-0880.00protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154... [more]
BLAST of Lcy06g016990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580848.16.1e-1261.18hypothetical protein SDJN03_20850, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN33975.11.5e-1071.43hypothetical protein, partial [Cucumis melo subsp. melo][more]
XP_022147153.11.2e-0780.00protein CHUP1, chloroplastic-like [Momordica charantia][more]
BLAST of Lcy06g016990 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..212
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 50..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g016990.1Lcy06g016990.1mRNA