Lcy06g016190 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g016190
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Phytocyanin domain-containing protein
Location	Chr06: 36766249 .. 36766516 (+)
RNA-Seq Expression	Lcy06g016190
Synteny	Lcy06g016190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGGAACTCAAATCATATGTTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGAATTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTCTGAGCTGTTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAACAAGTCTGAACAACGTCTTCAAGAATCTGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTCAAATTAG

mRNA sequence

GTCGGAACTCAAATCATATGTTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGAATTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTCTGAGCTGTTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAACAAGTCTGAACAACGTCTTCAAGAATCTGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTCAAATTAG

Coding sequence (CDS)

ATGAACGAGGATGAGAATTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTCTGAGCTGTTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAACAAGTCTGAACAACGTCTTCAAGAATCTGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTCAAATTAG

Protein sequence

MNEDENFVQVFGPEKHGRVRGYGVGVTPLSCLDHLLMYVILSVVLTSLNNVFKNLNDKEKSRYKHSKIKLSN

Homology

[Close]

BLAST of Lcy06g016190 vs. ExPASy TrEMBL
Match: A0A5A7U8E9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00340 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MNEDENFVQVFGPEKHGRVRGYGVGVTP 29
          MNED+ FVQVFGPEKHG VRGYGVGVTP
Sbjct: 60 MNEDDIFVQVFGPEKHGCVRGYGVGVTP 87

[Close]

BLAST of Lcy06g016190 vs. ExPASy TrEMBL
Match: A0A2N9H407 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34385 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1   MNEDENFVQVFGPEKHGRVRGYGVGVTPLSCLD 34
           M+ED+ FV+VFGPE HGRVRGYG GVTP    D
Sbjct: 80  MSEDQMFVEVFGPEHHGRVRGYGAGVTPTQLWD 112

[Close]

BLAST of Lcy06g016190 vs. ExPASy TrEMBL
Match: A0A2N9I580 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47041 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1   MNEDENFVQVFGPEKHGRVRGYGVGVTPLSCLD 34
           M+ED+ FV+VFGPE HGRVRGYG GVTP    D
Sbjct: 101 MSEDQMFVEVFGPEHHGRVRGYGAGVTPTQLWD 133

[Close]

BLAST of Lcy06g016190 vs. ExPASy TrEMBL
Match: A0A2N9ITE4 (Phytocyanin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56598 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1   MNEDENFVQVFGPEKHGRVRGYGVGVTP 29
           M+EDE FV+VFGPE HGRVRGYG GVTP
Sbjct: 162 MSEDEMFVEVFGPEHHGRVRGYGDGVTP 189

[Close]

BLAST of Lcy06g016190 vs. ExPASy TrEMBL
Match: A0A2N9GVX9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31423 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1   MNEDENFVQVFGPEKHGRVRGYGVGVTP 29
           M+EDE FV+VFGPE HGRVRGYG GVTP
Sbjct: 151 MSEDEMFVEVFGPEHHGRVRGYGDGVTP 178

[Close]

BLAST of Lcy06g016190 vs. NCBI nr
Match: KAA0049895.1 (uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07633.1 uncharacterized protein E5676_scaffold105G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MNEDENFVQVFGPEKHGRVRGYGVGVTP 29
          MNED+ FVQVFGPEKHG VRGYGVGVTP
Sbjct: 60 MNEDDIFVQVFGPEKHGCVRGYGVGVTP 87

[Close]

BLAST of Lcy06g016190 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1   MNEDENFVQVFGPEKHGRVRGYGVGVTP 29
           MNEDE FV+VFGPEKHG V GYGVGVTP
Sbjct: 81  MNEDETFVRVFGPEKHGHVHGYGVGVTP 108

The following BLAST results are available for this feature:

BLAST of Lcy06g016190 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g016190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8E9	2.9e-05	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9H407	1.9e-04	69.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34385 PE=4 SV=1	[more]
A0A2N9I580	1.9e-04	69.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47041 PE=4 SV=1	[more]
A0A2N9ITE4	3.2e-04	82.14	Phytocyanin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56...	[more]
A0A2N9GVX9	3.2e-04	82.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31423 PE=4 SV=1	[more]

BLAST of Lcy06g016190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049895.1	6.0e-05	89.29	uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07...	[more]
XP_038904040.1	6.0e-05	85.71	uncharacterized protein LOC120090445 [Benincasa hispida]	[more]

BLAST of Lcy06g016190 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g016190.1	Lcy06g016190.1	mRNA