Lcy06g015740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g015740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ribosomal RNA small subunit methyltransferase NEP1
Location	Chr06: 34943086 .. 34948324 (-)
RNA-Seq Expression	Lcy06g015740
Synteny	Lcy06g015740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTGTTGCCGCAGCCGTCGTCTTTCTTCCGCTCGTGCCGCCGTAGCCTCCCTTGATTTTCTACTCCCTTGCTGTTACTGGTATGTCCCCAATCTCCATCTATGTCTTTCTGTTTACTTGAAAAACACAAATTAGAACTTGTATAATGAAAGAATAGAGTGTTTTGCTTTTCTTTTTTTTTTTTTTTTAATATCAATAGTAGTAACACAAAAAACGGGAGACTCTTCTGGAGGGCACAATTGGTACATATACGATGGAGAGATGGTTTTGAGACACTGCATTCTTTTGTTTTGTTTTTGTTTTTTTTTTTTTTTTTTGACAACCCGAAACACTGCATTCTTGGCAGAGAGGAGGAATTGGATTTAAAAAAAACCATACCAAATCGAAGGTATTGCATTTGTTTGTGAATTGTTCTCCCTTCCATTAGGCCACTCAAATTAGGACTTAGTTTGATGGTAGATTGTAATAGATGTTGATGAGTTATTGGATTAAAATATTTGTTTAGGGAGCCAGCGAATTGTTTTTTAAAATTGAAGTCGTCTTGAAATTCTTGGTGCTTGGAATGAGAAGGCTTTTTTTGTAATAAAAATAAGATTATAATAGATGTTGATTATTTTGTAGGAAACTCTCTAATGAATGGTGTTTGGAATGAGAGCTGTCCATAGGTTTTTGTGTAATAAAAATAAGATTGTAATAGATGTTTGTGAGTTACTGAATTAAAATATCTTGTAGGGAGTCAATGAGTTGACTTTAGAAAATTGAAGTCGTCTCTTGAACTTTTCTAATGTATGGTGTTTGGAATGAGAAGATTCCATAGGTTTTTGTGTAATAAAAATAAGATTACAATAGATGTTGATGATTTTGTAGGAAGCCAATGAGTCGTTTTTTGAAAATTGGAGTCATCTCTTGAAGGTTTCTAATGAATGGTGCTTGGAATGAGAAGAGTCTATAGGATTTTGTGTAATAAAAATAAGATTGTAATAGTTGTTGATGAGTTATTGAATTAAAATTTTTTGTAGGAACCCAATGAGTCATTTTTTGAAAATTGAAGTGTCTTTTGAAATTCTCTAATGAATGGTGCTTGGAATGAGAAGAATCCATAGGTTTTTGTGTAATACAAATAAGATTATAATTGATGTTAATTATTAGGAAACCAACAAGTCGTTTTTTGAAAATTGAAGTCGTCTCTTGAAATTCTCTAATGGATGGTGCTTGAAATGTGAACAATCCATAGGTTTTTGTGTAATAAAAATAAGATTGTAATAGATCTTGATTATTTTGTAGGAAGCCAATGAGTCGTTTTTTTGAAAATTGAAGTCGTCTCTTGAAATTTTCTAATCAATGGTGCTTGAAATGAGAACAATCCATAGGTTCTTGTGTTATAAAAATAAGATTATAATAGATGTTGATTATTTTGTCGGAAGCCATTGAGTTGTTTTTTTGAAAATTGAAGTCGTCTCTTAAAATTCTCTAACGAATGGTGTTTGGAATGAAAACAGCCCATAGGTTTTTGTGTAATAGAAATAAGATTGTAATAGATGTTGATTATTTGTAGCAAGCCAATGAATAGTTTTTTGAAAATTTAAGTTGTCTTTTGAAATTCTCTAATAAATGGTGCTTGGAATGAGAACAATCAATAGCTCTTTGTGTTATAAAAATAAGATTAAAATAGATGTTGATTATTTTGTAGGAAGCCAATGAGTCGTTTTTTGAAAATTGAAGTCGTCTCTTGAAATTCTCTAATGAATGGTGCTTGGAATGAGAAGAGTCCATAGGTTTTTGTGTAATAGAAATAGGATTATAATAGATGTTAATTATTTTGTAGGAAGCCAATGGGTCGTTTTTTGAAAATTGAAGTAGTCTTGAAATTCTCTAATGGATGATGCTTGGAATGGGATCAATCTAGGTTTTTGTGTAATAAAAATAAGTTTGAAATAGATGTTGATTATTTTGTAGGGAGCCAATAAGCCGTTTTTTGAAAATTGGAGTCGTCTCTTGAAATTCTCTAATGAATGATGCTTGGAATGAGAATAGTCCATAGATTTTTGTGTTCTAAAAATAAAGGGGTAAATTAATTAATAATGTATAGTAAATTGAAAAGCCAGTTTGGTGGAGTTGTGTGGCAACTATCTTGACCCAACCCACTTTCTCTTTTCCATCTTGCATTTTGTCCTAATTCCAATATATCCAATAGAATTAGGTAAAATAGGCATATGTTTAAAATTTGGAGGGCAAAATGGAGAGAGAGTTTCTCTCTAGTCACTTTTATATATAGTATAGATAGATGTGTTTAGGGTTGAGTAATGACAAATTAATATTATTAATTTGCCTTAATGGTAAATTTCATAATGAAAAAAAACGCATATAACTCAAAATTATAGACAAAATTTCAAAGGGTAAAATAGAAAGGATTTAGCTGGAAAATCTTGAGCCAAGAGCTGTTTTTTTTTTTTTAAAACTAGACATTTATGAAATATCGGTTCCGAAGAGGTCTAATGCCCATAATTTTTGTTAATTTCCACAATGTATTTCAGTCAGCCCAATAAGAAAAATTTTGCAGCCCAGTCCATAAACCCAGCTGTGTGGTGGCTGCAGCGCGCTTTCAAGGCGAAAACCAGCAGCCACTCCAGCTACACATCACTTCGAAGCTTGAGGCCGAACAATACAATGGTTCGACCATTTGCAGCGAAGGGGAAGAAGAGAAAGAAGACTGAGAAATACGACAGAGATGATGACGACGGAGAATCGACCGCACCGGCCAAGAAGCCTATGGTGGTTAAGGAACCTGATGAAGAAGAACCAGTGAATGAAGCAGCAAAAGAAGACTTTCACGAGCTTGAAGGTATTCCAATTGTTCCAAGAGACCCCAAAAGTGATAACAATGCTGGTGTCATCTTCATCCTCGAGAGAGCTTCTTTGGAGGTCGCCAAAGTTGGGAAGGTGGGTATTTTTTAGATGCATGGTTTTGATTTGCTGCTTTGGAGTTTTAGGATTTTATTCAATTCAGGCGTTTATATGAGCTTTGTTGTGTTTTTATGAAGTTTAAGGTAACTATTCATTATCCATTCTCTGTATTTTTAACTAGATTTTAATGTTTCATGCATATAGAATTACCAGCTGTTGAATTCCGATGACCACTCCAATTTTTTGCGGAGAAATAACAGAAATCCGGGGGATTACAGACCAGATATCCTGCATCAAGTAAGTAGCTGTAGGCTGTAGGTCACTGTTGTTTTTTTCCAATTGGATATTGAATTATTTCAGGGAAATGAGAGAGGGGACTTTGTATGTTGATATTTGAGTACCAGAAGTGATTTTAAATGTAAATGATTCAGGCTCTTTTGGCGATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGTTGTTTATGTGAAAACTGAGAAAGGCTTATTAATTGAAATTAAACCATATGTTCGTCTTCCAAGGACGCAGAAACGGTTTTATGGAGTTATGTGTAAGTGGATTTGCTTGTTCTAATTTGGCTGAACATCTCTGCAGTTGGAGTGTGTTTTGATCAATGGAGTTGTCCGTTTTATAATCCTTTTCATTGACCTGTTTCCAAATACTTTGCAGTACAATTGCTACAAAAGTTAAGCATCTCAGCTGCAGGTAAGCGTGAGAAACTTTTTCGGGTGATAAAGAACCCTGTGACTCAGTATTTACCTGCCAATTCTTGTAAAATGGGTAAGCCTATATGTTCTTCCCCTCCAAATATTTGTGAGTTTTGTGTTTTGGTTGGAACTTTTCATATTGTTTTCTTGCATATCAGGCTTCTCGCATAGTTCAGACAAGTTGGTCAGGGTGCGAAATTATTTGGATACTGTCAAAGATGATGTAGACCTTGTTTTTGTGGTAGCTTTAAAACTCAGAACTGAAAATTCCACCTTTCCATGCTTCATTTCTTTGTATAGCATATGACCAACTCCCCTTTGCTGCAATGTTTTAGGTGGGTGCAATGGCTCATGGGAAAATTGAGACTGATTATACTGATGATCTTTTAGCAAGTAAGTTTTTTCTTTTTTCTTTTTTTTTTCTCTTTTTTTTCCATGTATTTAATTTTTTAAGTTCAACAACATTTGAGGATAGGTAGATTCAAACCTCTAACAACTTGTTTGAGATACATGCCAATTACCACTAAGCTATGCTCACTTTGGCTTTCATATATTTAGTTTGAGTACTTGGATGGCAGGAAATAATTACAATAGTACATTTCACTTAAACTCCACTAGACTTTTTGAGCACTTGTGGTGTTTGATTCATTTGCAGTATGTGATAGAAATCCTGTGGAGAAAATTGGTGTGAACAGAGATTGGTGAGTAAATGTGTGCATAGAGAGATGTTAGAGATGCATAGTGTATAGAGAGACGTCCGTGGAGAAAGTGTGTAGATAGTAATTAGGAAAAGAAAGTGGGTAAAAGGTTATTAAGAAAAGAAAGTGTATCGCAAAAAAATTAAGGATGAAGCTTAAATATCAAGTATCAATGACTTCTTACTTCTTTGAAGAGCACTTCTAAGTTATTTTGGCTTTTTTTTAGGAGGGCTTCTAAAATTGTAGCCAAACATAAAGATTTGAGGTATAATTTCAAACATGTCATAAATAGTGTGAGCATTGCATTTGCAAAAAAGTGACTAGTTGTCCAAATGCTCAAACTGTTACCACTTTTATTTTTTATTTTTGGTATTATATACTTTTGTTGAAGCTAAATCCATTGCAATCATAAATTCTGTGAGTCTGACTATTTTTCCTGTTATATTTGTGTAGTTTCTGAATATCCTCTCAGTGCTAGTTGCTGTATTGCGGATATCTGCAAAGATTTGGCAGATAAATGGAATGTAGGGTGAGCCATGCTTGCAACTCTGCATCCAGTTAAGTTTTAAAATTCGTGCCTCGACTTACCTTGTTTCATATTCTTAGTTATTATTTAAGAAAATATGCTGAAAAGTTTTTAGGTGTTTATTGTGGAACCATAATAGAAGATTCCATTTTTTTTCCTGCTTCGAAGAGATGAACTGTAGTGATGAATTAAGCCTTACCATAGCTATTTTTTGTGTAGCTAATGCTTAATCGATTATAATTTCATATGGCCTCTTCTAAGCAATACTCTTAGTTGTTAAAAGTTTGATAAGAAGTGATTCAGTAGAATTTTATTGCATAGCATTTGAGTCCTCTGTTGTACGTTAGAGAATACAACTTGTGAAAAGTAAAATTGCC

mRNA sequence

TCACTGTTGCCGCAGCCGTCGTCTTTCTTCCGCTCGTGCCGCCGTAGCCTCCCTTGATTTTCTACTCCCTTGCTGTTACTGTCAGCCCAATAAGAAAAATTTTGCAGCCCAGTCCATAAACCCAGCTGTGTGGTGGCTGCAGCGCGCTTTCAAGGCGAAAACCAGCAGCCACTCCAGCTACACATCACTTCGAAGCTTGAGGCCGAACAATACAATGGTTCGACCATTTGCAGCGAAGGGGAAGAAGAGAAAGAAGACTGAGAAATACGACAGAGATGATGACGACGGAGAATCGACCGCACCGGCCAAGAAGCCTATGGTGGTTAAGGAACCTGATGAAGAAGAACCAGTGAATGAAGCAGCAAAAGAAGACTTTCACGAGCTTGAAGGTATTCCAATTGTTCCAAGAGACCCCAAAAGTGATAACAATGCTGGTGTCATCTTCATCCTCGAGAGAGCTTCTTTGGAGGTCGCCAAAGTTGGGAAGAATTACCAGCTGTTGAATTCCGATGACCACTCCAATTTTTTGCGGAGAAATAACAGAAATCCGGGGGATTACAGACCAGATATCCTGCATCAAGCTCTTTTGGCGATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGTTGTTTATGTGAAAACTGAGAAAGGCTTATTAATTGAAATTAAACCATATGTTCGTCTTCCAAGGACGCAGAAACGGTTTTATGGAGTTATGTTACAATTGCTACAAAAGTTAAGCATCTCAGCTGCAGGTAAGCGTGAGAAACTTTTTCGGGTGATAAAGAACCCTGTGACTCAGTATTTACCTGCCAATTCTTGTAAAATGGGCTTCTCGCATAGTTCAGACAAGTTGGTCAGGGTGCGAAATTATTTGGATACTGTCAAAGATGATGTAGACCTTGTTTTTGTGGTGGGTGCAATGGCTCATGGGAAAATTGAGACTGATTATACTGATGATCTTTTAGCAATTTCTGAATATCCTCTCAGTGCTAGTTGCTGTATTGCGGATATCTGCAAAGATTTGGCAGATAAATGGAATGTAGGGTGAGCCATGCTTGCAACTCTGCATCCAGTTAAGTTTTAAAATTCGTGCCTCGACTTACCTTGTTTCATATTCTTAGTTATTATTTAAGAAAATATGCTGAAAAGTTTTTAGGTGTTTATTGTGGAACCATAATAGAAGATTCCATTTTTTTTCCTGCTTCGAAGAGATGAACTGTAGTGATGAATTAAGCCTTACCATAGCTATTTTTTGTGTAGCTAATGCTTAATCGATTATAATTTCATATGGCCTCTTCTAAGCAATACTCTTAGTTGTTAAAAGTTTGATAAGAAGTGATTCAGTAGAATTTTATTGCATAGCATTTGAGTCCTCTGTTGTACGTTAGAGAATACAACTTGTGAAAAGTAAAATTGCC

Coding sequence (CDS)

ATGGTTCGACCATTTGCAGCGAAGGGGAAGAAGAGAAAGAAGACTGAGAAATACGACAGAGATGATGACGACGGAGAATCGACCGCACCGGCCAAGAAGCCTATGGTGGTTAAGGAACCTGATGAAGAAGAACCAGTGAATGAAGCAGCAAAAGAAGACTTTCACGAGCTTGAAGGTATTCCAATTGTTCCAAGAGACCCCAAAAGTGATAACAATGCTGGTGTCATCTTCATCCTCGAGAGAGCTTCTTTGGAGGTCGCCAAAGTTGGGAAGAATTACCAGCTGTTGAATTCCGATGACCACTCCAATTTTTTGCGGAGAAATAACAGAAATCCGGGGGATTACAGACCAGATATCCTGCATCAAGCTCTTTTGGCGATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGTTGTTTATGTGAAAACTGAGAAAGGCTTATTAATTGAAATTAAACCATATGTTCGTCTTCCAAGGACGCAGAAACGGTTTTATGGAGTTATGTTACAATTGCTACAAAAGTTAAGCATCTCAGCTGCAGGTAAGCGTGAGAAACTTTTTCGGGTGATAAAGAACCCTGTGACTCAGTATTTACCTGCCAATTCTTGTAAAATGGGCTTCTCGCATAGTTCAGACAAGTTGGTCAGGGTGCGAAATTATTTGGATACTGTCAAAGATGATGTAGACCTTGTTTTTGTGGTGGGTGCAATGGCTCATGGGAAAATTGAGACTGATTATACTGATGATCTTTTAGCAATTTCTGAATATCCTCTCAGTGCTAGTTGCTGTATTGCGGATATCTGCAAAGATTTGGCAGATAAATGGAATGTAGGGTGA

Protein sequence

MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGIPIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG

Homology

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BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.9e-46
Identity = 96/205 (46.83%), Postives = 135/205 (65.85%), Query Frame = 0


Query: 75  VIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAK 134
           +I +LE ASLE  KVGK Y+LLN D H + L +N R+PG+ RPDI HQ+LL + DS + +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 135 AGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKN 194
           AG L+ VY+ T+K +LIE+ P  R+PRT  RF G+M+QLL KLS+ AA   +KL +VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 162

Query: 195 PVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMAHGKIETDYTDDLLA 254
           PV+ + P    K+G S S + +  +R   + V     +VFVVGA AHGK+  +YT+ +++
Sbjct: 163 PVSDHFPVGCMKIGTSFSVEDISDIR---ELVPSSDPVVFVVGAFAHGKVSVEYTEKMVS 222

Query: 255 ISEYPLSASCCIADICKDLADKWNV 280
           IS YPLSA+   A +     + W V
Sbjct: 223 ISNYPLSAALTCAKVTTAFEEVWGV 243

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BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 186.0 bits (471), Expect = 5.7e-46
Identity = 105/244 (43.03%), Postives = 150/244 (61.48%), Query Frame = 0


Query: 41  DEEEPVNEAAKEDFHELEGIPIVPRDPK--SDNNAG---VIFILERASLEVAKVGKNYQL 100
           D  +P   +  E   + + +P  P+ P+  + N  G   +I +LE ASLE  KVGK Y+L
Sbjct: 6   DGFKPRERSGGEQAQDWDALP--PKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYEL 65

Query: 101 LNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKP 160
           LN D H + L +N R+PG+ RPDI HQ+LL + DS + +AG L+ VY+ T+K +LIE+ P
Sbjct: 66  LNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQ-VYIHTQKNVLIEVNP 125

Query: 161 YVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDK 220
             R+PRT  RF G+M+QLL KLS+ AA   +KL +VIKNPV+ + P    K+G S S   
Sbjct: 126 QTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPV 185

Query: 221 LVRVRNYLDTVKDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDLAD 280
           +  VR   + V     +VFVVGA AHGK+  +YT+ +++IS YPLSA+   A +     +
Sbjct: 186 VSDVR---ELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEE 243

[Close]

BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot
Match: Q9W4J5 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX=7227 GN=CG3527 PE=3 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 94/210 (44.76%), Postives = 129/210 (61.43%), Query Frame = 0


Query: 75  VIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAK 134
           +I +LE A LE  KV   ++LLN DDH+  +R+N R+PG  RPDI HQ LL +FDS + +
Sbjct: 43  LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102

Query: 135 AGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKN 194
           AG L+ V+V+TE  +LIEI P  R+PRT KRF G+M+QLL K  I A     +L  VIKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 162

Query: 195 PVTQYLPANSCKMGFSHSSDKLVRVRNYL-----DTVKDDVDLVFVVGAMAHGKIETDYT 254
           P+T ++P    K   S S   L   R+ +      +   D  +V V+GA AHG ++TDYT
Sbjct: 163 PITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYT 222

Query: 255 DDLLAISEYPLSASCCIADICKDLADKWNV 280
           ++L +IS YPLSA+   + IC    + W V
Sbjct: 223 EELFSISNYPLSAAIACSKICSAFEEVWGV 251

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BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-44
Identity = 94/202 (46.53%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 78  ILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGR 137
           +LE  SLE AKVG  Y +L+SD H+NFLR+  ++P DYRPDILHQ LL + DS + +AG+
Sbjct: 31  VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90

Query: 138 LKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKNPVT 197
           L+ V+ +T K +L+++ P  R+PRT  RF G+M+QLL KLSI AA   +KL  V+KNPV+
Sbjct: 91  LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 150

Query: 198 QYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMAHGKIETDYTDDLLAISE 257
            +LP  S KM  S +  +L  + N L   + D  LV ++G +A GKI  DY D    IS 
Sbjct: 151 NHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 210

Query: 258 YPLSASCCIADICKDLADKWNV 280
           YPLSA+   A +   L + W +
Sbjct: 211 YPLSAALTCAKVTSGLEEIWGI 230

[Close]

BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-44
Identity = 103/251 (41.04%), Postives = 146/251 (58.17%), Query Frame = 0


Query: 42  EEEPVNEAAKEDFHELEGIPIVPRDP-----KSDNNAGVIFILERASLEVAKVGKN---- 101
           E+  V +A K    +     +VP+ P     K      +I +L  ASLE  K+  N    
Sbjct: 3   EDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGG 62

Query: 102 --YQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLL 161
             Y LLN DDH   L++  R+  + RPDI HQ LL + DS I KAG+L+ VY++T +G+L
Sbjct: 63  DKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGIL 122

Query: 162 IEIKPYVRLPRTQKRFYGVMLQLLQKLSISAAGKREKLFRVIKNPVTQYLPANSCKMGFS 221
           IE+ P VR+PRT KRF G+M+QLL KLSI +    EKL +VIKNP+T +LP    K+  S
Sbjct: 123 IEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLS 182

Query: 222 HSSDKLVRVRNYLDTVKDDVDLVFVVGAMAHGK--IETDYTDDLLAISEYPLSASCCIAD 280
             +  ++RV++Y++ + DD  +   VGAMA GK     +Y D+ + +S YPLSAS   + 
Sbjct: 183 FDA-PVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK 242

[Close]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL
Match: A0A5D3DPQ6 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006800 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138
Identity = 255/280 (91.07%), Postives = 265/280 (94.64%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK EKYDRD+D  ES++PAKK MV  EPDEE P     KEDFHELEGI
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPK+DNNAGVIFILERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLPAN  KMGFSHSSDKLV++RNYLD VKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIETDYTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL
Match: A0A1S3B7L0 (ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LOC103486891 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138
Identity = 255/280 (91.07%), Postives = 265/280 (94.64%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK EKYDRD+D  ES++PAKK MV  EPDEE P     KEDFHELEGI
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPK+DNNAGVIFILERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLPAN  KMGFSHSSDKLV++RNYLD VKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIETDYTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL
Match: A0A6J1F634 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=3662 GN=LOC111442430 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 3.8e-138
Identity = 255/280 (91.07%), Postives = 266/280 (95.00%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK E+YDRDDD  ESTA AKK MV  EPD E+P NEAA+E+FHELEGI
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPKSD+ AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLP+NS KMGFSHSSDKLV+VR YLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIET YTDDLLAISEYPLSASCCIADICKDLADKWNVG
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL
Match: A0A6J1J0G6 (ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 GN=LOC111482341 PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 5.0e-138
Identity = 255/280 (91.07%), Postives = 266/280 (95.00%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKKTE+YDRDDD  ES A AKK MV  EPD E+P NEAA+E+FHELEGI
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESIASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPKSD+ AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLP+NS KMGFSHSSDKLV+VR YLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIET YTDDLLAISEYPLSASCCIADICKDLADKWNVG
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL
Match: A0A0A0LFI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.9e-137
Identity = 253/280 (90.36%), Postives = 265/280 (94.64%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK+EKYDRD+D  EST+P+KK M+  EPDE     E AKEDFHELEGI
Sbjct: 33  MVRPFAAKGKKRKKSEKYDRDEDAEESTSPSKKVMLENEPDE-----EPAKEDFHELEGI 92

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PI P+DPK+D+NAGVIFILERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDIL
Sbjct: 93  PIAPKDPKNDSNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 152

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 153 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 212

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLPAN  KMGFSHSSDKLV+VRNYLD VKDDVDLVFVVGAMA
Sbjct: 213 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKVRNYLDAVKDDVDLVFVVGAMA 272

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIETDYTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 273 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 307

[Close]

BLAST of Lcy06g015740 vs. NCBI nr
Match: XP_038905075.1 (ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida])

HSP 1 Score: 502.7 bits (1293), Expect = 2.1e-138
Identity = 252/280 (90.00%), Postives = 264/280 (94.29%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK+EKYDRDDDDGEST PAKKP    EPDEE P     KEDFHELEGI
Sbjct: 1   MVRPFAAKGKKRKKSEKYDRDDDDGESTVPAKKPTAENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DP SD +AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLR+NNRNPGDYRPDIL
Sbjct: 61  PIVPKDPNSDKHAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRKNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLK VYVKTEKGLLIE+KPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKAVYVKTEKGLLIEVKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLPANS KMGFSHSSDKLV++RNYLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANSRKMGFSHSSDKLVKMRNYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIETDYTDDLLAISEYPLSASCCIADICKDLA+KWN+G
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNIG 275

[Close]

BLAST of Lcy06g015740 vs. NCBI nr
Match: KAG7017643.1 (Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502.7 bits (1293), Expect = 2.1e-138
Identity = 256/280 (91.43%), Postives = 267/280 (95.36%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKKTE+YDRDDD  ESTA AKK MV  EPD E+P NEAA+E+FHELEGI
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPKSD+ AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLP+NS KMGFSHSSDKLV+VR YLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIET YTDDLLAISEYPLSASCCIADICKDLADKWNVG
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Lcy06g015740 vs. NCBI nr
Match: XP_023527836.1 (ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.9 bits (1291), Expect = 3.6e-138
Identity = 256/280 (91.43%), Postives = 266/280 (95.00%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKKTE+YDRDDD  ESTA AKK MV  EPD E+P NEAA+E FHELEGI
Sbjct: 1   MVRPFAAKGKKRKKTERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEETFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPKSD+ AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLP+NS KMGFSHSSDKLV+VR YLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIET YTDDLLAISEYPLSASCCIADICKDLADKWNVG
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Lcy06g015740 vs. NCBI nr
Match: XP_008443268.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KAA0053876.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa] >TYK25528.1 ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo var. makuwa])

HSP 1 Score: 501.5 bits (1290), Expect = 4.7e-138
Identity = 255/280 (91.07%), Postives = 265/280 (94.64%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK EKYDRD+D  ES++PAKK MV  EPDEE P     KEDFHELEGI
Sbjct: 1   MVRPFAAKGKKRKKAEKYDRDEDGEESSSPAKKVMVENEPDEEPP-----KEDFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPK+DNNAGVIFILERASLEVAKVGKNYQLLNSDDHSN+LRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKTDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNYLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLPAN  KMGFSHSSDKLV++RNYLD VKDDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPANCRKMGFSHSSDKLVKMRNYLDAVKDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIETDYTDDLLAISEYPLSASCCIADICKDLA+KWNVG
Sbjct: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLAEKWNVG 275

[Close]

BLAST of Lcy06g015740 vs. NCBI nr
Match: XP_022935622.1 (ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG6580885.1 Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 500.7 bits (1288), Expect = 7.9e-138
Identity = 255/280 (91.07%), Postives = 266/280 (95.00%), Query Frame = 0


Query: 1   MVRPFAAKGKKRKKTEKYDRDDDDGESTAPAKKPMVVKEPDEEEPVNEAAKEDFHELEGI 60
           MVRPFAAKGKKRKK E+YDRDDD  ESTA AKK MV  EPD E+P NEAA+E+FHELEGI
Sbjct: 1   MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPD-EQPENEAAEENFHELEGI 60

Query: 61  PIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120
           PIVP+DPKSD+ AGVIF+LERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL
Sbjct: 61  PIVPKDPKSDSKAGVIFVLERASLEVAKVGKNYQLLNSDDHSNFLRRNNRNPGDYRPDIL 120

Query: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIS 180
           HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSI+
Sbjct: 121 HQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYGVMLQLLQKLSIT 180

Query: 181 AAGKREKLFRVIKNPVTQYLPANSCKMGFSHSSDKLVRVRNYLDTVKDDVDLVFVVGAMA 240
           AAGKREKLFRVIKNPVTQYLP+NS KMGFSHSSDKLV+VR YLD V+DDVDLVFVVGAMA
Sbjct: 181 AAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA 240

Query: 241 HGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNVG 281
           HGKIET YTDDLLAISEYPLSASCCIADICKDLADKWNVG
Sbjct: 241 HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG 279

[Close]

BLAST of Lcy06g015740 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related )

HSP 1 Score: 306.6 bits (784), Expect = 2.0e-83
Identity = 167/298 (56.04%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MVRPFAAKGKKRK-KTEKYDRDDDD-------------GESTAPAKKPMVVK---EPDEE 60
           MVRP+  K  KRK + E+YD+++D+              ES+  AKK    +   + DEE
Sbjct: 1   MVRPYGIKVNKRKEREERYDKEEDEVEEQPKFEQKQKARESSKKAKKESTSRAEEDNDEE 60

Query: 61  EPVNEAAKEDFHELEGIPIVPRDPKSDNNAGVIFILERASLEVAKVGKNYQLLNSDDHSN 120
           E   EA       + GIPIV   P  +  +G++F+LE+ASLEVAKVGK YQLLNSDDH+N
Sbjct: 61  EVTVEATAAAEDIVGGIPIVLNAPNKE-KSGIVFVLEKASLEVAKVGKTYQLLNSDDHAN 120

Query: 121 FLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQ 180
           FL++NNRNP DYRPDI HQALL I DS + KAGRLK VYV+TEKG+L E+KP+VR+PRT 
Sbjct: 121 FLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYVRTEKGVLFEVKPHVRIPRTF 180

Query: 181 KRFYGVMLQLLQKLSISAAGKREKLFRVIKNPVTQ-YLPANSCKMGFSHSSDKLVRVRNY 240
           KRF G+MLQLLQKLSI+A   REKL R +KNP+ + +LP NS ++GFSHSS+KLV ++ +
Sbjct: 181 KRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPVNSHRIGFSHSSEKLVNMQKH 240

Query: 241 LDTV-KDDVDLVFVVGAMAHGKIETDYTDDLLAISEYPLSASCCIADICKDLADKWNV 280
           L TV  DD D VFVVGAMAHGKI+ +Y D+ +++SEYPLSA+ CI+ IC+ LA  WN+
Sbjct: 241 LATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEYPLSAAYCISRICEALATNWNI 297

The following BLAST results are available for this feature:

BLAST of Lcy06g015740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O35130	1.9e-46	46.83	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]
Q92979	5.7e-46	43.03	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]
Q9W4J5	1.8e-44	44.76	Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX...	[more]
Q9XX15	2.4e-44	46.53	Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX...	[more]
Q06287	2.4e-44	41.04	Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (...	[more]

BLAST of Lcy06g015740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ6	2.3e-138	91.07	Ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3B7L0	2.3e-138	91.07	ribosomal RNA small subunit methyltransferase NEP1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1F634	3.8e-138	91.07	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1J0G6	5.0e-138	91.07	ribosomal RNA small subunit methyltransferase nep-1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0LFI3	1.9e-137	90.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821550 PE=3 SV=1	[more]

BLAST of Lcy06g015740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905075.1	2.1e-138	90.00	ribosomal RNA small subunit methyltransferase nep-1 [Benincasa hispida]	[more]
KAG7017643.1	2.1e-138	91.43	Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrospe...	[more]
XP_023527836.1	3.6e-138	91.43	ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita pepo subsp. pepo]	[more]
XP_008443268.1	4.7e-138	91.07	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo] >KA...	[more]
XP_022935622.1	7.9e-138	91.07	ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata] >KAG658...	[more]

BLAST of Lcy06g015740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57000.1	2.0e-83	56.04	nucleolar essential protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 75..279 e-value: 1.3E-80 score: 271.6
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PFAM	PF03587	EMG1	coord: 77..272 e-value: 2.7E-65 score: 219.9
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 9..279
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	CDD	cd18088	Nep1-like	coord: 75..270 e-value: 8.64034E-94 score: 273.637
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 67..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g015740.1	Lcy06g015740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity