Lcy06g015640 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g015640
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposable element Tf2
LocationChr06: 34160920 .. 34161144 (+)
RNA-Seq ExpressionLcy06g015640
SyntenyLcy06g015640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTTAGCAGGAGCAACATCCGAATCAGACCTCCAAGCCGTCATTCAAATAGTCGTCCAGACACTTTCGGATAACGACGATGTTCAAAACGAAGATAATGCTGAAGCCACTAAGGTAGCTTCAGAATCTTCAGTCAATGATGTCGAAGATGACGAAGAATACGACCTGTATGCAAATTTCGACATTTTAGACCCTTACTATGATTCCCAACCAGGATGA

mRNA sequence

ATGAAGTTTTTAGCAGGAGCAACATCCGAATCAGACCTCCAAGCCGTCATTCAAATAGTCGTCCAGACACTTTCGGATAACGACGATGTTCAAAACGAAGATAATGCTGAAGCCACTAAGGTAGCTTCAGAATCTTCAGTCAATGATGTCGAAGATGACGAAGAATACGACCTGTATGCAAATTTCGACATTTTAGACCCTTACTATGATTCCCAACCAGGATGA

Coding sequence (CDS)

ATGAAGTTTTTAGCAGGAGCAACATCCGAATCAGACCTCCAAGCCGTCATTCAAATAGTCGTCCAGACACTTTCGGATAACGACGATGTTCAAAACGAAGATAATGCTGAAGCCACTAAGGTAGCTTCAGAATCTTCAGTCAATGATGTCGAAGATGACGAAGAATACGACCTGTATGCAAATTTCGACATTTTAGACCCTTACTATGATTCCCAACCAGGATGA

Protein sequence

MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYANFDILDPYYDSQPG
Homology
BLAST of Lcy06g015640 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 1   MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
           M  +AGA SE+DLQA+++ VV  + D++    ED+ E T+++S+SSVN+++ D   DLY 
Sbjct: 133 MTSIAGAKSEADLQAIMKTVVHNIFDDN---KEDDPEDTRISSDSSVNNIDSDN--DLYY 192

Query: 61  NFDILDPYYDSQPG 75
           NFDI DPY DSQPG
Sbjct: 193 NFDIFDPYLDSQPG 201

BLAST of Lcy06g015640 vs. ExPASy TrEMBL
Match: A0A5D3BP68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001310 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M F+ GA SE+DLQAV++ V+ T+ +++    EDN E T+++ +SS+ND+  D   D Y 
Sbjct: 24 MTFIVGAKSEADLQAVMETVIHTIFNDN---KEDNPENTRISLDSSINDINFDN--DPYY 83

Query: 61 NFDILDPYYDSQPG 75
          NFDI D Y DSQPG
Sbjct: 84 NFDIFDLYLDSQPG 92

BLAST of Lcy06g015640 vs. ExPASy TrEMBL
Match: A0A5A7VA49 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00290 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M  +AGA SE+DLQAV++IV+ T+S+++    ED+ E  +++S+SSVND+E D   D Y 
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDN---KEDDPEDNEISSDSSVNDIEFDN--DPYY 60

Query: 61 NFDILDPYYDS 72
          NFDI DPY DS
Sbjct: 61 NFDIFDPYLDS 66

BLAST of Lcy06g015640 vs. ExPASy TrEMBL
Match: A0A5A7STS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00870 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M  +AGA SESDLQAVI+ VV   ++N D   +D+ E     S+SSVND+  D   D Y 
Sbjct: 1  MTSIAGAKSESDLQAVIETVV---NNNSDDNKQDDPEDITNLSDSSVNDI--DFANDPYY 60

Query: 61 NFDILDPYYDSQPG 75
          NFDI DPY DSQPG
Sbjct: 61 NFDISDPYLDSQPG 69

BLAST of Lcy06g015640 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1   MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
           M F+AGA SE+DLQ V++ V+ T+ D+D    E++ E T+++S S  ND++ D   D Y 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDD---KENDVEDTRISSNSFANDIDFDN--DPYY 133

Query: 61  NFDILDPYYDS 72
           NFDI DPY+DS
Sbjct: 134 NFDISDPYFDS 139

BLAST of Lcy06g015640 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 1   MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
           M  +AGA SE+DLQA+++ VV  + D++    ED+ E T+++S+SSVN+++ D   DLY 
Sbjct: 133 MTSIAGAKSEADLQAIMKTVVHNIFDDN---KEDDPEDTRISSDSSVNNIDSDN--DLYY 192

Query: 61  NFDILDPYYDSQPG 75
           NFDI DPY DSQPG
Sbjct: 193 NFDIFDPYLDSQPG 201

BLAST of Lcy06g015640 vs. NCBI nr
Match: KAA0066324.1 (hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK00955.1 hypothetical protein E5676_scaffold602G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M F+ GA SE+DLQAV++ V+ T+ +++    EDN E T+++ +SS+ND+  D   D Y 
Sbjct: 24 MTFIVGAKSEADLQAVMETVIHTIFNDN---KEDNPENTRISLDSSINDINFDN--DPYY 83

Query: 61 NFDILDPYYDSQPG 75
          NFDI D Y DSQPG
Sbjct: 84 NFDIFDLYLDSQPG 92

BLAST of Lcy06g015640 vs. NCBI nr
Match: KAA0062549.1 (hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M  +AGA SE+DLQAV++IV+ T+S+++    ED+ E  +++S+SSVND+E D   D Y 
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDN---KEDDPEDNEISSDSSVNDIEFDN--DPYY 60

Query: 61 NFDILDPYYDS 72
          NFDI DPY DS
Sbjct: 61 NFDIFDPYLDS 66

BLAST of Lcy06g015640 vs. NCBI nr
Match: KAA0033913.1 (hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK01295.1 hypothetical protein E5676_scaffold49G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1  MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
          M  +AGA SESDLQAVI+ VV   ++N D   +D+ E     S+SSVND+  D   D Y 
Sbjct: 1  MTSIAGAKSESDLQAVIETVV---NNNSDDNKQDDPEDITNLSDSSVNDI--DFANDPYY 60

Query: 61 NFDILDPYYDSQPG 75
          NFDI DPY DSQPG
Sbjct: 61 NFDISDPYLDSQPG 69

BLAST of Lcy06g015640 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1   MKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYA 60
           M F+AGA SE+DLQ V++ V+ T+ D+D    E++ E T+++S S  ND++ D   D Y 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDD---KENDVEDTRISSNSFANDIDFDN--DPYY 133

Query: 61  NFDILDPYYDS 72
           NFDI DPY+DS
Sbjct: 134 NFDISDPYFDS 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UEA01.3e-0851.35Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3BP685.4e-0748.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VA497.1e-0752.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7STS63.5e-0654.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KXT56.0e-0647.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0051819.12.7e-0851.35Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... [more]
KAA0066324.11.1e-0648.65hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK0095... [more]
KAA0062549.11.5e-0652.11hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa][more]
KAA0033913.17.2e-0654.05hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK0... [more]
KGN53659.11.2e-0547.89hypothetical protein Csa_014527 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g015640.1Lcy06g015640.1mRNA