Lcy06g015440 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g015440
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Integrase catalytic domain-containing protein
Location	Chr06: 33753074 .. 33753549 (+)
RNA-Seq Expression	Lcy06g015440
Synteny	Lcy06g015440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACATAAGTTCTTCATCTGGATCTAGATCTGTAGGTTCTGCTTCATCCATTGAAGCACAGTTAAATTCGTACTTCCTTCATCATTCTTTTGGATCTTCTTCCACTCTTGTCACTCAGCCTTTACTTGGCGCTATCAACTATACTTCATGGAGTCGAGCCATGCGTATGGTCATTTCTGGCAAAAACAAGTCAAGATTCATCAATGGTAAGATCACGAAACCTGCTGAAGGTACTTTATTGGTAGCGTGGGTGTGCAACAATATAATGATATTGTTGCCTCATGGATCCTGAATTCAGTTTCTAAAGAAATTGTCGCTAGTATCGTTTATAATGGATCTACAAAAGACGTCTGGGATGAATTGCATGATCGTTTCAAGCAGACAAGCAGACCTAGCATTTATCAATTGCATAAGGAATTGGTTACTTTACTCAAGGCACCATGTCTGTTGAAACATACTACACGAAGCTGA

mRNA sequence

ATGGCGGACATAAGTTCTTCATCTGGATCTAGATCTGTAGGTTCTGCTTCATCCATTGAAGCACAGTTAAATTCGTACTTCCTTCATCATTCTTTTGGATCTTCTTCCACTCTTGTCACTCAGCCTTTACTTGGCGCTATCAACTATACTTCATGGAGTCGAGCCATGCGTATGGTCATTTCTGGCAAAAACAAGTCAAGATTCATCAATGGTAAGATCACGAAACCTGCTGAAGTTTCTAAAGAAATTGTCGCTAGTATCGTTTATAATGGATCTACAAAAGACGTCTGGGATGAATTGCATGATCGTTTCAAGCAGACAAGCAGACCTAGCATTTATCAATTGCATAAGGAATTGGTTACTTTACTCAAGGCACCATGTCTGTTGAAACATACTACACGAAGCTGA

Coding sequence (CDS)

ATGGCGGACATAAGTTCTTCATCTGGATCTAGATCTGTAGGTTCTGCTTCATCCATTGAAGCACAGTTAAATTCGTACTTCCTTCATCATTCTTTTGGATCTTCTTCCACTCTTGTCACTCAGCCTTTACTTGGCGCTATCAACTATACTTCATGGAGTCGAGCCATGCGTATGGTCATTTCTGGCAAAAACAAGTCAAGATTCATCAATGGTAAGATCACGAAACCTGCTGAAGTTTCTAAAGAAATTGTCGCTAGTATCGTTTATAATGGATCTACAAAAGACGTCTGGGATGAATTGCATGATCGTTTCAAGCAGACAAGCAGACCTAGCATTTATCAATTGCATAAGGAATTGGTTACTTTACTCAAGGCACCATGTCTGTTGAAACATACTACACGAAGCTGA

Protein sequence

MADISSSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISGKNKSRFINGKITKPAEVSKEIVASIVYNGSTKDVWDELHDRFKQTSRPSIYQLHKELVTLLKAPCLLKHTTRS

Homology

[Close]

BLAST of Lcy06g015440 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.4e-29
Identity = 78/146 (53.42%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 1   MADISSSSGSR---SVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMR 60
           M + SS++GSR      + S  +AQLN YF+HHS G ++ +VTQPL GAINYTSWSRAM 
Sbjct: 1   MENQSSTNGSRFDPLTAANSQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAML 60

Query: 61  MVISGKNKSRFINGKITKPAE---------------------VSKEIVASIVYNGSTKDV 120
           M ISG+NK+ FI GKI KP++                     VSKEI ASI+Y GS K++
Sbjct: 61  MAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKEI 120

Query: 121 WDELHDRFKQTSRPSIYQLHKELVTL 123
           WDEL  RFKQ++ PSIYQL KE VTL
Sbjct: 121 WDELRQRFKQSNGPSIYQLRKEFVTL 146

[Close]

BLAST of Lcy06g015440 vs. ExPASy TrEMBL
Match: A0A6J1CXR2 (uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015239 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.2e-24
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 3   DISSSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISG 62
           +I+SS  + S    ++IE+QLN Y +HHS   ++ LVTQ LLGA NY SW R+M + +SG
Sbjct: 5   EITSSVPTSSTAGTTTIESQLNPYLIHHSTAPTTMLVTQQLLGASNYNSWCRSMLIALSG 64

Query: 63  KNKSRFINGKITKP--------------------AEVSKEIVASIVYNGSTKDVWDELHD 122
           KNK  FI+G I KP                      VSKEI ASI+Y GS KD+WDEL +
Sbjct: 65  KNKVGFIDGTIKKPNGNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAKDIWDELKE 124

Query: 123 RFKQTSRPSIYQLHKELVTLLK 125
           RF+Q+  P I+QL KELVT ++
Sbjct: 125 RFQQSDAPRIFQLRKELVTTIQ 146

[Close]

BLAST of Lcy06g015440 vs. ExPASy TrEMBL
Match: A0A5D3DEP5 (Putative glycosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001600 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 63/122 (51.64%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 17  SSIEAQLNSYFLHHSFGSSSTLVTQP--LLGAINYTSWSRAMRMVISGKNKSRFINGKIT 76
           S I+AQLN YF+HHS G ++ +V QP  L GAIN TS SRAM M ISG+NK+ FI  KI 
Sbjct: 334 SQIDAQLNPYFIHHSLGPTTAIVMQPLALTGAINCTSCSRAMLMAISGRNKACFITRKIR 393

Query: 77  KPA---------------------EVSKEIVASIVYNGSTKDVWDELHDRFKQTSRPSIY 116
           KP                       VSKEI ASIVY GS K++W+EL   FKQ + PSIY
Sbjct: 394 KPLGKVLLDAWICNYDIIASWILNSVSKEIAASIVYTGSVKEIWNELCQIFKQPNGPSIY 453

[Close]

BLAST of Lcy06g015440 vs. ExPASy TrEMBL
Match: A0A6J1CN69 (uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012810 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 5   SSSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISGKN 64
           +S + + +V + ++IE+QLN Y +HHS   ++ LVTQ LLGA NY SWSR+M + +SGKN
Sbjct: 18  TSVAQNSAVENTTAIESQLNPYLIHHSTAPTTILVTQQLLGASNYNSWSRSMIIALSGKN 77

Query: 65  KSRFINGKITKPA--------------------EVSKEIVASIVYNGSTKDVWDELHDRF 106
           K  F++G I KP                      VSKEI AS VY GS K++WDEL +RF
Sbjct: 78  KVGFVDGTIQKPKGNLLAAWKCINDIITSWILNSVSKEIAASFVYTGSAKEIWDELKERF 137

[Close]

BLAST of Lcy06g015440 vs. ExPASy TrEMBL
Match: A0A5J5BKC2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 6   SSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISGKNK 65
           S+SG R+  + S+IE   N Y+LHHS      LV+Q L G  NYT+WSRAM + +S KNK
Sbjct: 10  SNSGERTNSNRSAIEEPSNPYYLHHSDSLRQMLVSQQLTGE-NYTNWSRAMLIALSVKNK 69

Query: 66  SRFINGKITKPA-----------------------EVSKEIVASIVYNGSTKDVWDELHD 123
             F++G I +P                         VSKEI ASI++  S +++W +L D
Sbjct: 70  LGFVDGSILEPQGTGNNLLNSWIRNNNIVISWILNSVSKEISASIIFAASAREIWLDLRD 129

[Close]

BLAST of Lcy06g015440 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 78/146 (53.42%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 1   MADISSSSGSR---SVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMR 60
           M + SS++GSR      + S  +AQLN YF+HHS G ++ +VTQPL GAINYTSWSRAM 
Sbjct: 1   MENQSSTNGSRFDPLTAANSQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAML 60

Query: 61  MVISGKNKSRFINGKITKPAE---------------------VSKEIVASIVYNGSTKDV 120
           M ISG+NK+ FI GKI KP++                     VSKEI ASI+Y GS K++
Sbjct: 61  MAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKEI 120

Query: 121 WDELHDRFKQTSRPSIYQLHKELVTL 123
           WDEL  RFKQ++ PSIYQL KE VTL
Sbjct: 121 WDELRQRFKQSNGPSIYQLRKEFVTL 146

[Close]

BLAST of Lcy06g015440 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 3   DISSSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISG 62
           +I+SS  + S    ++IE+QLN Y +HHS   ++ LVTQ LLGA NY SW R+M + +SG
Sbjct: 5   EITSSVPTSSTAGTTTIESQLNPYLIHHSTAPTTMLVTQQLLGASNYNSWCRSMLIALSG 64

Query: 63  KNKSRFINGKITKP--------------------AEVSKEIVASIVYNGSTKDVWDELHD 122
           KNK  FI+G I KP                      VSKEI ASI+Y GS KD+WDEL +
Sbjct: 65  KNKVGFIDGTIKKPNGNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAKDIWDELKE 124

Query: 123 RFKQTSRPSIYQLHKELVTLLK 125
           RF+Q+  P I+QL KELVT ++
Sbjct: 125 RFQQSDAPRIFQLRKELVTTIQ 146

[Close]

BLAST of Lcy06g015440 vs. NCBI nr
Match: XP_031745063.1 (uncharacterized protein LOC116405242 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.4e-20
Identity = 58/118 (49.15%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 5   SSSSGSRSVG-SASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISGK 64
           +S S +RSV  ++S+++ QLN + LHHS   ++ LV+ PL G+ NY+SWSRAM + +SGK
Sbjct: 8   TSDSSNRSVPITSSNLDVQLNPFMLHHSITPTTNLVSTPLAGSNNYSSWSRAMMLALSGK 67

Query: 65  NKSRFINGKITKPAEVSKEIVASIVYNGSTKDVWDELHDRFKQTSRPSIYQLHKELVT 122
           NK  FI G I KP+E S    +   +NG+ K++WDEL +R+KQ++ P IYQL K+LVT
Sbjct: 68  NKVGFITGLIKKPSEDS----SKPRFNGNIKEMWDELKERYKQSNGPHIYQLQKDLVT 121

[Close]

BLAST of Lcy06g015440 vs. NCBI nr
Match: KAA0060408.1 (putative glycosyltransferase [Cucumis melo var. makuwa] >TYK22147.1 putative glycosyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-19
Identity = 63/122 (51.64%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 17  SSIEAQLNSYFLHHSFGSSSTLVTQP--LLGAINYTSWSRAMRMVISGKNKSRFINGKIT 76
           S I+AQLN YF+HHS G ++ +V QP  L GAIN TS SRAM M ISG+NK+ FI  KI 
Sbjct: 334 SQIDAQLNPYFIHHSLGPTTAIVMQPLALTGAINCTSCSRAMLMAISGRNKACFITRKIR 393

Query: 77  KPA---------------------EVSKEIVASIVYNGSTKDVWDELHDRFKQTSRPSIY 116
           KP                       VSKEI ASIVY GS K++W+EL   FKQ + PSIY
Sbjct: 394 KPLGKVLLDAWICNYDIIASWILNSVSKEIAASIVYTGSVKEIWNELCQIFKQPNGPSIY 453

[Close]

BLAST of Lcy06g015440 vs. NCBI nr
Match: XP_022142771.1 (uncharacterized protein LOC111012810 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 5   SSSSGSRSVGSASSIEAQLNSYFLHHSFGSSSTLVTQPLLGAINYTSWSRAMRMVISGKN 64
           +S + + +V + ++IE+QLN Y +HHS   ++ LVTQ LLGA NY SWSR+M + +SGKN
Sbjct: 18  TSVAQNSAVENTTAIESQLNPYLIHHSTAPTTILVTQQLLGASNYNSWSRSMIIALSGKN 77

Query: 65  KSRFINGKITKPA--------------------EVSKEIVASIVYNGSTKDVWDELHDRF 106
           K  F++G I KP                      VSKEI AS VY GS K++WDEL +RF
Sbjct: 78  KVGFVDGTIQKPKGNLLAAWKCINDIITSWILNSVSKEIAASFVYTGSAKEIWDELKERF 137

The following BLAST results are available for this feature:

BLAST of Lcy06g015440 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g015440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VE66	5.4e-29	53.42	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1CXR2	5.2e-24	47.18	uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5D3DEP5	2.3e-19	51.64	Putative glycosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1CN69	1.1e-16	44.63	uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5J5BKC2	5.2e-16	40.71	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1	[more]

BLAST of Lcy06g015440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065480.1	1.1e-28	53.42	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
XP_022145891.1	1.1e-23	47.18	uncharacterized protein LOC111015239 [Momordica charantia]	[more]
XP_031745063.1	9.4e-20	49.15	uncharacterized protein LOC116405242 [Cucumis sativus]	[more]
KAA0060408.1	4.7e-19	51.64	putative glycosyltransferase [Cucumis melo var. makuwa] >TYK22147.1 putative gly...	[more]
XP_022142771.1	2.2e-16	44.63	uncharacterized protein LOC111012810 [Momordica charantia]	[more]

BLAST of Lcy06g015440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 30..77 e-value: 6.9E-14 score: 51.4
None	No IPR available	PANTHER	PTHR37610:SF55	SUBFAMILY NOT NAMED	coord: 19..122
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 19..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g015440.1	Lcy06g015440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016740	transferase activity