Lcy06g014800 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g014800
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionMuDRA-like transposase
LocationChr06: 30269284 .. 30269768 (-)
RNA-Seq ExpressionLcy06g014800
SyntenyLcy06g014800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTAATGGTCCTTCTGGAGTATGCACTGCTAGTCAGACTCATACTGCACCAAGGTGATCGGTTGTTTTGCATGGACAATCTTCCTTGGGAGAGGACATACGTGAGGGTGAGATCTTGCTCCGCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAGCCATGAAGAAAAATTTTGAATTCAGGGTAAAGAAGTCGTGCAAGGTCTTATATACAGTCCTATTTGTGGTGAAAGCTGTAAATGGAGAGTGCACACAATTAAGATGGATGGTTCTAAGATATTTAAGATCAATATGTACGTACGTGAGCACACATGCTCCATTGGTATCTTGAACCACGACCACAGACAAGCTAGTGCCGGAGTCATTGGACAAGTGATCAAGAACAAGTTTACGGGATCCGGACGTACGTACAAACCCCGACACATCATTGAGGATATGAGGCAAGAGTATGGGGTTAACTTTAGCTACGACAAGGCATGA

mRNA sequence

ATGAGGGTTAATGGTCCTTCTGGAGTATGCACTGCTAGTCAGACTCATACTGCACCAAGCTGTAAATGGAGAGTGCACACAATTAAGATGGATGGTTCTAAGATATTTAAGATCAATATGTACGTACGTGAGCACACATGCTCCATTGGTATCTTGAACCACGACCACAGACAAGCTAGTGCCGGAGTCATTGGACAAGTGATCAAGAACAAGTTTACGGGATCCGGACGTACGTACAAACCCCGACACATCATTGAGGATATGAGGCAAGAGTATGGGGTTAACTTTAGCTACGACAAGGCATGA

Coding sequence (CDS)

ATGAGGGTTAATGGTCCTTCTGGAGTATGCACTGCTAGTCAGACTCATACTGCACCAAGCTGTAAATGGAGAGTGCACACAATTAAGATGGATGGTTCTAAGATATTTAAGATCAATATGTACGTACGTGAGCACACATGCTCCATTGGTATCTTGAACCACGACCACAGACAAGCTAGTGCCGGAGTCATTGGACAAGTGATCAAGAACAAGTTTACGGGATCCGGACGTACGTACAAACCCCGACACATCATTGAGGATATGAGGCAAGAGTATGGGGTTAACTTTAGCTACGACAAGGCATGA

Protein sequence

MRVNGPSGVCTASQTHTAPSCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYKPRHIIEDMRQEYGVNFSYDKA
Homology
BLAST of Lcy06g014800 vs. ExPASy TrEMBL
Match: A0A6J1DRC3 (uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023629 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 15  THTAPSCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTG 74
           T T  +CKWR+  +++DGS+IFKI+ YV  H+CS+ ILNHDHRQA A ++ ++IK+K++G
Sbjct: 235 TCTDNNCKWRMRAVRLDGSEIFKISKYVNFHSCSLHILNHDHRQAKAWIVEELIKSKYSG 294

Query: 75  SGRTYKPRHIIEDMRQEYGVNFSYDKA 102
            GR  KP+ IIEDMRQ+YG+N SY+KA
Sbjct: 295 IGRQCKPKEIIEDMRQDYGINMSYEKA 321

BLAST of Lcy06g014800 vs. ExPASy TrEMBL
Match: A0A5A7USU5 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001470 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 21  CKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYK 80
           C WR+  +K+  S IFKI  YV+ H+CS+  LN DHRQA   V+G++IK+KF G GR YK
Sbjct: 255 CGWRLRAVKLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKCWVVGELIKSKFKGPGRIYK 314

Query: 81  PRHIIEDMRQEYGVNFSYDKA 102
           PR IIEDMRQ+YG+N SY+KA
Sbjct: 315 PRDIIEDMRQDYGINMSYEKA 335

BLAST of Lcy06g014800 vs. ExPASy TrEMBL
Match: A0A5A7VNP6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001920 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 21  CKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYK 80
           C WR+  +++  S IFKI  YV+ H+CS+  LN DHRQA + V+G++IK+KF G+GR YK
Sbjct: 281 CGWRLRAVRLKDSNIFKIKKYVKVHSCSLKFLNRDHRQAKSWVVGELIKSKFKGAGRIYK 340

Query: 81  PRHIIEDMRQEYGVNFSYDKA 102
           PR IIEDMRQ+YG+N SY+KA
Sbjct: 341 PRDIIEDMRQDYGINMSYEKA 361

BLAST of Lcy06g014800 vs. ExPASy TrEMBL
Match: A0A5D3CII9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00300 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 21  CKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYK 80
           C WR+  +K+  S IFKI  YV+ H+CS+  LN DHRQA   V+G++IK+KF G GR YK
Sbjct: 255 CGWRLRAVKLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKCWVVGELIKSKFKGPGRIYK 314

Query: 81  PRHIIEDMRQEYGVNFSYDKA 102
           PR IIEDMRQ+YG+N SY+KA
Sbjct: 315 PRDIIEDMRQDYGINMSYEKA 335

BLAST of Lcy06g014800 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.1e-22
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 21  CKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYK 80
           C WR+  +++  S IFKI  YV+ H+CS+ +LN DHRQA + V+G++IK+KF G GR YK
Sbjct: 280 CGWRLRAMRLKDSNIFKIKKYVKVHSCSLDVLNRDHRQAKSWVVGELIKSKFKGVGRLYK 339

Query: 81  PRHIIEDMRQEYGVNFSYDKA 102
           PR IIEDMRQ+YG+N SY+KA
Sbjct: 340 PRDIIEDMRQDYGINMSYEKA 360

BLAST of Lcy06g014800 vs. NCBI nr
Match: XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 20  SCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTY 79
           +CKW +  +K+ G  IFKI  Y+R HTC IGILNHDHRQA+  V+G++IK+KFTG GR Y
Sbjct: 90  NCKWSLRAVKISGCDIFKIMKYMRSHTCFIGILNHDHRQATIVVVGELIKDKFTGIGRVY 149

Query: 80  KPRHIIEDMRQEYGVNFSYDK 101
           KPRHI+EDM++EYG+N SYDK
Sbjct: 150 KPRHIVEDMKKEYGINISYDK 170

BLAST of Lcy06g014800 vs. NCBI nr
Match: XP_038891670.1 (uncharacterized protein LOC120081063 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 22  KWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTYKP 81
           KW +  +K+ G  IFKI  Y+R HTCSIGILNHDHRQA+  V+G++IK+KF G GR YKP
Sbjct: 52  KWSLRAVKIPGCDIFKITKYMRSHTCSIGILNHDHRQATTAVVGKLIKDKFIGIGRVYKP 111

Query: 82  RHIIEDMRQEYGVNFSYDKA 102
           RHIIEDMR+EYGVN SY+KA
Sbjct: 112 RHIIEDMRKEYGVNISYNKA 131

BLAST of Lcy06g014800 vs. NCBI nr
Match: XP_038902318.1 (uncharacterized protein LOC120088954 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-25
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 20  SCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTY 79
           +CKW +H +K+    IFKI  ++R HTCSIGILNHDHRQA+A V+G++IK+KFTG G  Y
Sbjct: 155 NCKWILHAVKIPECDIFKITKHIRSHTCSIGILNHDHRQATAAVVGELIKDKFTGIGCVY 214

Query: 80  KPRHIIEDMRQEYGVNFSYDKA 102
           KP HI++DMR+EYGVN SYDKA
Sbjct: 215 KPCHIVKDMRKEYGVNISYDKA 236

BLAST of Lcy06g014800 vs. NCBI nr
Match: XP_038905828.1 (uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 uncharacterized protein LOC120091780 [Benincasa hispida])

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-24
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 20  SCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIGQVIKNKFTGSGRTY 79
           +CKW +  +KM+GS IFKI  Y   HTCSIGILNHDHRQ +A V+GQ+I++KF G GR Y
Sbjct: 175 TCKWSLRAVKMEGSDIFKITKYCSSHTCSIGILNHDHRQVTATVVGQLIEDKFMGIGRIY 234

Query: 80  KPRHIIEDMRQEYGVNFSYDK 101
           KP HI+EDMR++YGV+ +YDK
Sbjct: 235 KPCHIVEDMRRDYGVSINYDK 255

BLAST of Lcy06g014800 vs. NCBI nr
Match: XP_038882374.1 (uncharacterized protein LOC120073641 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 6.2e-24
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 6   PSGVCTASQTHTAPSCKWRVHTIKMDGSKIFKINMYVREHTCSIGILNHDHRQASAGVIG 65
           P    + ++     +CKW    +K+ G  IFKI  Y++ HTCSIGILNHDHRQ +  V+ 
Sbjct: 85  PGTSSSETEVEVENNCKWSFRAVKIPGCDIFKITKYMQSHTCSIGILNHDHRQETTTVVD 144

Query: 66  QVIKNKFTGSGRTYKPRHIIEDMRQEYGVNFSYDKA 102
           ++IK+KFT  GR YKP HIIEDMR+EYGVN SYDKA
Sbjct: 145 ELIKDKFTSIGRVYKPCHIIEDMRKEYGVNISYDKA 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DRC31.1e-2357.47uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7USU56.2e-2259.26MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9... [more]
A0A5A7VNP66.2e-2258.02MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3CII96.2e-2259.26MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8... [more]
A0A2I7YUI48.1e-2258.02MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038902336.12.5e-2564.20uncharacterized protein LOC120088970 [Benincasa hispida][more]
XP_038891670.13.3e-2567.50uncharacterized protein LOC120081063 [Benincasa hispida][more]
XP_038902318.14.3e-2564.63uncharacterized protein LOC120088954 [Benincasa hispida][more]
XP_038905828.13.6e-2462.96uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 unchara... [more]
XP_038882374.16.2e-2455.21uncharacterized protein LOC120073641 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g014800.1Lcy06g014800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity