Lcy06g013840 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g013840
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ABC transporter-like
Location	Chr06: 22199859 .. 22200031 (+)
RNA-Seq Expression	Lcy06g013840
Synteny	Lcy06g013840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTGCTTTTGCGTTCTGCTACTCAAACGTTGAGAGCTCTGTCGAAAGATGGAAGAATAGCGATTTACAAGATTCATCAACCAAGTAGTGAAGTTTTTGAGCTATTCGATCAACTTTACTTGCTTTCAGGAGGGAAAATTGTGCGTTTTGGTCAAGCTTCAAAGGCTTATGAG

mRNA sequence

TAGTGCTTTTGCGTTCTGCTACTCAAACGTTGAGAGCTCTGTCGAAAGATGGAAGAATAGCGATTTACAAGATTCATCAACCAAGTAGTGAAGTTTTTGAGCTATTCGATCAACTTTACTTGCTTTCAGGAGGGAAAATTGTGCGTTTTGGTCAAGCTTCAAAGGCTTATGAG

Coding sequence (CDS)

TAGTGCTTTTGCGTTCTGCTACTCAAACGTTGAGAGCTCTGTCGAAAGATGGAAGAATAGCGATTTACAAGATTCATCAACCAAGTAGTGAAGTTTTTGAGCTATTCGATCAACTTTACTTGCTTTCAGGAGGGAAAATTGTGCGTTTTGGTCAAGCTTCAAAGGCTTATGAG

Protein sequence

VLLRSATQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE

Homology

[Close]

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot
Match: Q8RXN0 (ABC transporter G family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFD+LYLLSGGK V FGQAS AYE
Sbjct: 232 TQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYE 282

[Close]

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot
Match: Q8RWI9 (ABC transporter G family member 15 OS=Arabidopsis thaliana OX=3702 GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-09
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 8   QTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           Q LR +++DGR  I  +HQPSSEVF LFD L+LLS G+ V FG+A  A E
Sbjct: 209 QALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVE 258

[Close]

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot
Match: Q9C8K2 (ABC transporter G family member 12 OS=Arabidopsis thaliana OX=3702 GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 8   QTLRALSKD-GRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           Q LR +++D GR  +  IHQPSSEVF LFD L+LLS G+ V FG++  A E
Sbjct: 208 QALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVE 258

[Close]

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot
Match: Q9C8J8 (ABC transporter G family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 8   QTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKA 56
           Q LR ++  G+  +  IHQPS EVF LFD L LLSGG+ V FG+A  A
Sbjct: 194 QILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESA 241

[Close]

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot
Match: P10090 (Protein white OS=Drosophila melanogaster OX=7227 GN=w PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-07
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 5   SATQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           S  Q L+ LS+ G+  I  IHQPSSE+FELFD++ L++ G++   G  S+A +
Sbjct: 278 SVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVD 330

[Close]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL
Match: A0A1S3AU98 (ABC transporter G family member 11 OS=Cucumis melo OX=3656 GN=LOC103482752 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 224 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 274

[Close]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL
Match: A0A2P6R7E1 (Putative sulfate-transporting ATPase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0456491 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 237 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 287

[Close]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL
Match: A0A5D3BJ12 (ABC transporter G family member 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002900 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 224 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 274

[Close]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL
Match: A0A0A0LTX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044820 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 74  TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 124

[Close]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL
Match: A0A6J1C8N0 (ABC transporter G family member 11 OS=Momordica charantia OX=3673 GN=LOC111008992 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 221 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 271

[Close]

BLAST of Lcy06g013840 vs. NCBI nr
Match: XP_008437286.1 (PREDICTED: ABC transporter G family member 11 [Cucumis melo] >XP_008437295.1 PREDICTED: ABC transporter G family member 11 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 224 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 274

[Close]

BLAST of Lcy06g013840 vs. NCBI nr
Match: XP_024187974.1 (ABC transporter G family member 11 [Rosa chinensis] >PRQ42332.1 putative sulfate-transporting ATPase [Rosa chinensis])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 237 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 287

[Close]

BLAST of Lcy06g013840 vs. NCBI nr
Match: XP_022137577.1 (ABC transporter G family member 11 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 221 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 271

[Close]

BLAST of Lcy06g013840 vs. NCBI nr
Match: TYJ99086.1 (ABC transporter G family member 11 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 224 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 274

[Close]

BLAST of Lcy06g013840 vs. NCBI nr
Match: XP_038894760.1 (ABC transporter G family member 11 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFDQLYLLSGGK V FGQAS+AYE
Sbjct: 224 TQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYE 274

[Close]

BLAST of Lcy06g013840 vs. TAIR 10
Match: AT1G17840.1 (white-brown complex homolog protein 11 )

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-17
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 7   TQTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           TQTLRALS+DGR  I  IHQPSSEVFELFD+LYLLSGGK V FGQAS AYE
Sbjct: 232 TQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYE 282

[Close]

BLAST of Lcy06g013840 vs. TAIR 10
Match: AT3G21090.1 (ABC-2 type transporter family protein )

HSP 1 Score: 63.2 bits (152), Expect = 8.0e-11
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 8   QTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           Q LR +++DGR  I  +HQPSSEVF LFD L+LLS G+ V FG+A  A E
Sbjct: 209 QALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVE 258

[Close]

BLAST of Lcy06g013840 vs. TAIR 10
Match: AT1G51460.1 (ABC-2 type transporter family protein )

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 8   QTLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKA 56
           Q LR ++  G+  +  IHQPS EVF LFD L LLSGG+ V FG+A  A
Sbjct: 194 QILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESA 241

[Close]

BLAST of Lcy06g013840 vs. TAIR 10
Match: AT1G51500.1 (ABC-2 type transporter family protein )

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 8   QTLRALSKD-GRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           Q LR +++D GR  +  IHQPSSEVF LFD L+LLS G+ V FG++  A E
Sbjct: 208 QALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVE 258

[Close]

BLAST of Lcy06g013840 vs. TAIR 10
Match: AT1G31770.1 (ATP-binding cassette 14 )

HSP 1 Score: 49.7 bits (117), Expect = 9.2e-07
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 9   TLRALSKDGRIAIYKIHQPSSEVFELFDQLYLLSGGKIVRFGQASKAYE 58
           T++ L+  GR  +  IHQPSS ++ +FD++ LLS G  + +G AS A E
Sbjct: 245 TIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVE 293

The following BLAST results are available for this feature:

BLAST of Lcy06g013840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXN0	2.1e-16	82.35	ABC transporter G family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCG11 PE=...	[more]
Q8RWI9	1.1e-09	58.00	ABC transporter G family member 15 OS=Arabidopsis thaliana OX=3702 GN=ABCG15 PE=...	[more]
Q9C8K2	1.1e-07	54.90	ABC transporter G family member 12 OS=Arabidopsis thaliana OX=3702 GN=ABCG12 PE=...	[more]
Q9C8J8	1.1e-07	54.17	ABC transporter G family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCG13 PE=...	[more]
P10090	4.0e-07	45.28	Protein white OS=Drosophila melanogaster OX=7227 GN=w PE=2 SV=2	[more]

BLAST of Lcy06g013840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AU98	1.6e-14	84.31	ABC transporter G family member 11 OS=Cucumis melo OX=3656 GN=LOC103482752 PE=4 ...	[more]
A0A2P6R7E1	1.6e-14	84.31	Putative sulfate-transporting ATPase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3...	[more]
A0A5D3BJ12	1.6e-14	84.31	ABC transporter G family member 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LTX5	1.6e-14	84.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044820 PE=4 SV=1	[more]
A0A6J1C8N0	1.6e-14	84.31	ABC transporter G family member 11 OS=Momordica charantia OX=3673 GN=LOC11100899...	[more]

BLAST of Lcy06g013840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437286.1	3.3e-14	84.31	PREDICTED: ABC transporter G family member 11 [Cucumis melo] >XP_008437295.1 PRE...	[more]
XP_024187974.1	3.3e-14	84.31	ABC transporter G family member 11 [Rosa chinensis] >PRQ42332.1 putative sulfate...	[more]
XP_022137577.1	3.3e-14	84.31	ABC transporter G family member 11 [Momordica charantia]	[more]
TYJ99086.1	3.3e-14	84.31	ABC transporter G family member 11 [Cucumis melo var. makuwa]	[more]
XP_038894760.1	3.3e-14	84.31	ABC transporter G family member 11 [Benincasa hispida]	[more]

BLAST of Lcy06g013840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17840.1	1.5e-17	82.35	white-brown complex homolog protein 11	[more]
AT3G21090.1	8.0e-11	58.00	ABC-2 type transporter family protein	[more]
AT1G51460.1	7.5e-09	54.17	ABC-2 type transporter family protein	[more]
AT1G51500.1	7.5e-09	54.90	ABC-2 type transporter family protein	[more]
AT1G31770.1	9.2e-07	42.86	ATP-binding cassette 14	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..57 e-value: 4.1E-5 score: 25.1
None	No IPR available	PANTHER	PTHR48042:SF3	SUBFAMILY NOT NAMED	coord: 6..55
None	No IPR available	PANTHER	PTHR48042	ABC TRANSPORTER G FAMILY MEMBER 11	coord: 6..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g013840.1	Lcy06g013840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding