Lcy06g013420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g013420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein, putative, unclassified
Location	Chr06: 19904195 .. 19904617 (+)
RNA-Seq Expression	Lcy06g013420
Synteny	Lcy06g013420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATGGAGGGTGGGGAACGGAAGGCAAATTAGGATTGGTGAAGACCCATGGGTGGGAGGGATTAATGCCTTTAGGCCGGTGTTGCTGAAAAAAGACATAGCCAACCATTATGTGAGTTCCCTGATGGATGAGGATGGCTGCTGGCGTGAGAGGGATATAAGATCATCATTCATATCCTCAGATGCGGACGAAATCTTGAATATTCCCCTTAGTTCTAGCAAGTCGGTTGATGAGATTATCTGGGGCTTCGATCCGAAGGGGTTATTTTCTGTCAAGAGCGCCTACTACTTAGCTCAACGAGTTGCAGCATCTGAGGTGGCCACCTCCTCTGATCAGTCGGAAGCGAAATCGATTTGGATTGATTTTTGGAAGGCCAAGGCTTTGCCGAGAGAGAAGATTTGCGCTTGGAAAGCCCTCTAG

mRNA sequence

ATGAGATGGAGGGTGGGGAACGGAAGGCAAATTAGGATTGGTGAAGACCCATGGGTGGGAGGGATTAATGCCTTTAGGCCGGTGTTGCTGAAAAAAGACATAGCCAACCATTATGTGAGTTCCCTGATGGATGAGGATGGCTGCTGGCGTGAGAGGGATATAAGATCATCATTCATATCCTCAGATGCGGACGAAATCTTGAATATTCCCCTTAGTTCTAGCAAGTCGGTTGATGAGATTATCTGGGGCTTCGATCCGAAGGGGTTATTTTCTGTCAAGAGCGCCTACTACTTAGCTCAACGAGTTGCAGCATCTGAGGTGGCCACCTCCTCTGATCAGTCGGAAGCGAAATCGATTTGGATTGATTTTTGGAAGGCCAAGGCTTTGCCGAGAGAGAAGATTTGCGCTTGGAAAGCCCTCTAG

Coding sequence (CDS)

ATGAGATGGAGGGTGGGGAACGGAAGGCAAATTAGGATTGGTGAAGACCCATGGGTGGGAGGGATTAATGCCTTTAGGCCGGTGTTGCTGAAAAAAGACATAGCCAACCATTATGTGAGTTCCCTGATGGATGAGGATGGCTGCTGGCGTGAGAGGGATATAAGATCATCATTCATATCCTCAGATGCGGACGAAATCTTGAATATTCCCCTTAGTTCTAGCAAGTCGGTTGATGAGATTATCTGGGGCTTCGATCCGAAGGGGTTATTTTCTGTCAAGAGCGCCTACTACTTAGCTCAACGAGTTGCAGCATCTGAGGTGGCCACCTCCTCTGATCAGTCGGAAGCGAAATCGATTTGGATTGATTTTTGGAAGGCCAAGGCTTTGCCGAGAGAGAAGATTTGCGCTTGGAAAGCCCTCTAG

Protein sequence

MRWRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSDADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWIDFWKAKALPREKICAWKAL

Homology

[Close]

BLAST of Lcy06g013420 vs. ExPASy TrEMBL
Match: A0A803PJK4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.3e-21
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1    MRWRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFIS 60
            +RW+VGNG QI+   DPW+    +F+P+L K    N  VS L+D D  W    ++S+F+ 
Sbjct: 1398 LRWKVGNGLQIKCATDPWLPSHTSFKPLLFKGSDFNLTVSELIDCDRQWHMPSLKSNFLD 1457

Query: 61   SDADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIW 120
             D D+IL+IPLS+    D+IIW  +  G+++VKS Y LA + A  E  + S  S +  +W
Sbjct: 1458 IDIDKILSIPLSTFSHDDKIIWHHETTGIYTVKSGYILASKFADQEAPSVS--SHSTQLW 1517

Query: 121  IDFWKAKALPREKICAWKAL 141
              FWK     + +I  WKA+
Sbjct: 1518 KHFWKLNIPSKVRIFLWKAV 1535

[Close]

BLAST of Lcy06g013420 vs. ExPASy TrEMBL
Match: Q94HY0 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g37370 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WRVGNG  IRI  DPW+   ++ RP+  K +    +VS L+ EDG W    I   F + D
Sbjct: 334 WRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLD 393

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
           A+ ILNI +SS    D I W  D  G+FSV+SAY LA ++   E ++SS  +     W  
Sbjct: 394 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEM 453

Query: 123 FWKAKALPREKICAWK 139
            WK K   + KI AW+
Sbjct: 454 IWKCKVPQKVKIFAWR 469

[Close]

BLAST of Lcy06g013420 vs. ExPASy TrEMBL
Match: A0A5S6RD43 (Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0076F20.17 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WRVGNG  IRI  DPW+   ++ RP+  K +    +VS L+ EDG W    I   F + D
Sbjct: 334 WRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLD 393

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
           A+ ILNI +SS    D I W  D  G+FSV+SAY LA ++   E ++SS  +     W  
Sbjct: 394 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEM 453

Query: 123 FWKAKALPREKICAWK 139
            WK K   + KI AW+
Sbjct: 454 IWKCKVPQKVKIFAWR 469

[Close]

BLAST of Lcy06g013420 vs. ExPASy TrEMBL
Match: C7J8D0 (Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3    WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
            WRVGNG+ IR+  DPW+   ++ RPV ++ +    +VS L+ +DG W    IR  F++ D
Sbjct: 1412 WRVGNGQSIRMWRDPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNID 1471

Query: 63   ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
             + IL+I LS  +  D + W  D  G FSV+SAY LA R+A +E ++SS    ++  W  
Sbjct: 1472 TELILSICLSPRQEEDFLAWHPDKSGRFSVRSAYNLACRLANTEGSSSSFALHSRKSWDL 1531

Query: 123  FWKAKALPREKICAWK 139
             WK K   + KI AWK
Sbjct: 1532 IWKCKLPQKIKIFAWK 1547

[Close]

BLAST of Lcy06g013420 vs. ExPASy TrEMBL
Match: Q2RBM8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g01470 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3    WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
            WRVGNG+ IR+  DPW+   ++ RPV ++ +    +VS L+ +DG W    IR  F++ D
Sbjct: 1412 WRVGNGQSIRMWRDPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNID 1471

Query: 63   ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
             + IL+I LS  +  D + W  D  G FSV+SAY LA R+A +E ++SS    ++  W  
Sbjct: 1472 TELILSICLSPRQEEDFLAWHPDKSGRFSVRSAYNLACRLANTEGSSSSFALHSRKSWDL 1531

Query: 123  FWKAKALPREKICAWK 139
             WK K   + KI AWK
Sbjct: 1532 IWKCKLPQKIKIFAWK 1547

[Close]

BLAST of Lcy06g013420 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WRVGNG+ IR+  DPW+   ++ RPV ++ +    +VS L+ +DG W    IR  F++ D
Sbjct: 23  WRVGNGQSIRMWRDPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNID 82

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
            + IL+I LS  +  D + W  D  G FSV+SAY LA R+A +E ++SS    ++  W  
Sbjct: 83  TELILSICLSPRQEEDFLAWHLDKFGRFSVRSAYNLACRLANTEGSSSSSALHSRKSWDL 142

Query: 123 FWKAKALPREKICAWK 139
            WK K   + KI AWK
Sbjct: 143 IWKCKLPQKIKIFAWK 158

[Close]

BLAST of Lcy06g013420 vs. NCBI nr
Match: ABA91072.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >BAH95030.1 Os11g0106066 [Oryza sativa Japonica Group])

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-19
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3    WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
            WRVGNG+ IR+  DPW+   ++ RPV ++ +    +VS L+ +DG W    IR  F++ D
Sbjct: 1412 WRVGNGQSIRMWRDPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNID 1471

Query: 63   ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
             + IL+I LS  +  D + W  D  G FSV+SAY LA R+A +E ++SS    ++  W  
Sbjct: 1472 TELILSICLSPRQEEDFLAWHPDKSGRFSVRSAYNLACRLANTEGSSSSFALHSRKSWDL 1531

Query: 123  FWKAKALPREKICAWK 139
             WK K   + KI AWK
Sbjct: 1532 IWKCKLPQKIKIFAWK 1547

[Close]

BLAST of Lcy06g013420 vs. NCBI nr
Match: AAK39575.1 (putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-19
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WRVGNG  IRI  DPW+   ++ RP+  K +    +VS L+ EDG W    I   F + D
Sbjct: 334 WRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLD 393

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
           A+ ILNI +SS    D I W  D  G+FSV+SAY LA ++   E ++SS  +     W  
Sbjct: 394 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEM 453

Query: 123 FWKAKALPREKICAWK 139
            WK K   + KI AW+
Sbjct: 454 IWKCKVPQKVKIFAWR 469

[Close]

BLAST of Lcy06g013420 vs. NCBI nr
Match: EEC72938.1 (hypothetical protein OsI_06800 [Oryza sativa Indica Group])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WR+GNG+ +R+  DPW+    + RP+  K++    +VS L+D+   W    I   F+  D
Sbjct: 331 WRIGNGKSVRLWRDPWIPRSFSRRPISAKRNCRLRWVSDLIDQSESWDTDKISQHFLPMD 390

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
           A+ ILNI LSS    D I W  D  G FSV+SAY+LA  +A  +  +SS  +     W  
Sbjct: 391 AEAILNIRLSSRLEDDFIAWHPDRLGRFSVRSAYHLAIALAQVDEGSSSSGNGNSRAWNA 450

Query: 123 FWKAKALPREKICAWKAL 141
            WK  A  + KI AW+A+
Sbjct: 451 LWKCNAPQKVKIFAWRAI 468

[Close]

BLAST of Lcy06g013420 vs. NCBI nr
Match: EEC83406.1 (hypothetical protein OsI_28856 [Oryza sativa Indica Group])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 3   WRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGCWRERDIRSSFISSD 62
           WR+GNG  +RI  DPW+   ++  P++LK++    + S L+D+DG W    I   F+  D
Sbjct: 825 WRIGNGNAVRIWRDPWLPRDHSRWPIILKRNCRLKWFSDLLDQDGSWNAEKINRYFLKVD 884

Query: 63  ADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKSIWID 122
           AD I  I  S     D + W  D  G FSV+SAY LA  +A  EV +SS  +     W  
Sbjct: 885 ADVIYKICTSPRVECDFLAWHPDKTGQFSVRSAYALAANLANMEVPSSSSTATVNKAWDL 944

Query: 123 FWKAKALPREKICAWKA 140
            WK     + +I AWKA
Sbjct: 945 IWKCNVPQKVRIFAWKA 961

[Close]

BLAST of Lcy06g013420 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-08
Identity = 37/142 (26.06%), Postives = 66/142 (46.48%), Query Frame = 0


Query: 2   RWRVGNGRQIRIGEDPWVGGINAFRPVLLKKDIANHYVSSLMDEDGC---WRERDIRSSF 61
           R  +G+G+ IRIG D  V   +  RP+  ++      +++L +  G    W +  I    
Sbjct: 39  RHLIGDGQNIRIGLDNIVDS-HPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFV 98

Query: 62  ISSDADEILNIPLSSSKSVDEIIWGFDPKGLFSVKSAYYLAQRVAASEVATSSDQSEAKS 121
             SD   I  I L+ SK  D+IIW ++  G ++V+S Y+L     ++ +   +    +  
Sbjct: 99  DQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSID 158

Query: 122 IWIDFWKAKALPREKICAWKAL 141
           +    W    +P+ K   W+AL
Sbjct: 159 LKTRIWNLPIMPKLKHFLWRAL 179

The following BLAST results are available for this feature:

BLAST of Lcy06g013420 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g013420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PJK4	4.3e-21	39.29	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
Q94HY0	3.1e-19	41.18	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
A0A5S6RD43	3.1e-19	41.18	Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNB...	[more]
C7J8D0	3.1e-19	40.44	Os11g0106066 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0106066 PE...	[more]
Q2RBM8	3.1e-19	40.44	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]

BLAST of Lcy06g013420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025877173.1	2.2e-19	40.44	uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X...	[more]
ABA91072.1	6.3e-19	40.44	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >B...	[more]
AAK39575.1	6.3e-19	41.18	putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotr...	[more]
EEC72938.1	1.8e-18	38.41	hypothetical protein OsI_06800 [Oryza sativa Indica Group]	[more]
EEC83406.1	2.4e-18	37.96	hypothetical protein OsI_28856 [Oryza sativa Indica Group]	[more]

BLAST of Lcy06g013420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	4.1e-08	26.06	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 2..139
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 2..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g013420.1	Lcy06g013420.1	mRNA