Lcy06g013190 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g013190
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Poly(A)-specific ribonuclease
Location	Chr06: 18700056 .. 18703874 (+)
RNA-Seq Expression	Lcy06g013190
Synteny	Lcy06g013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAACCAAGATCTCAAGAACAGCAATAAACCCATCAAAATCAGAGAAGTTTGGGCCTCGAATCTCGAATCTGAGTTCGAGTTGATCCGCGATGTCATCGATCACTTCCCTTGCGTTTCAATGGACACCGAGTTTCCCGGAATCGTTTTCACCGACCCGGCCAGACCCTACAACGCTCAGAATCGCCCCTCCGATCACTACAGACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATCCAGATCGGCATCACTCTCTCCAATTCCGACGGCAACCTCCCGGATCTCGGCACCGACGACAGCCGTTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTGGCGCGTGACTTCCACGCGCCGGACTCCATCGAGCTTCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGAGTCGAAGGGATCGACTCGTGCCGGTTCGCCGAGTTGATGATGTCATCCGGACTCGTTTGTAACGACTCAGTGAGTTGGGTGACCTTTCACAGCGCCTACGATTTTGGATATTTGGTTAAGATTTTGACTCAACAGAGCCTTCCGAATCGGCTAGAGGAATTCCTCGGCGTTCTCAGGGTTTTCTTTGGCGATTACGTGTACGATGTGAAGCACATGATGCGATTCTGTAAGAGCCTCTACGGCGGTTTGGACCGGATCGCGAAGATTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGTTGACGTGGCATGCGTTTCAGAAGATGAGGGATACGTTTTTTGTACAGGAGGAGGTGGAGAAACATGCTGGCGTGTTGTATGGATTGGAGGTGGAGGTCGTGTAAAAATAGAAAATGAATTAAATAAAAAATTTAATTTATTATTTATTTAATTGCTAAATCAATGGGCCAAGCTATTGACTTTTCTTTTTTTTTTTTTCTTTTTTTTTTCTTTTCTTTTTAACTTTTTAAAAGATAATAGCTCAGATTAAATCAAGGTTGAAAATATCAATATTGACATCGGTAACTCAAATTTATAGATATATCAACGGATATTCTAGAAAAAATCATGGATATCACAAAAACTTATAAAAATATTGTGATTTTTTTTGTTAAACTTTAGAATAAGCCTATTTAAGTAATGTCATGGGTAATTTTGGCATAACGGAAATTCCAGAAGAAAGAGGCTTGGGCCCAATCTAAACCGACCCACGAAAAGGAAGAAGCCCATGCCGAGGTCGAGGAGGTGGTCGGCCTCGGCCCAATGTCGAGGCCGACCAGGCTTCAAAGCCCAGATGCTACCTAGGTCAATGTGGAGGGTCCTCCTAGGCCCGAGAGGGCAGAGTTCGTGGAGCAGGGATCAATCTACGACGGGAAGAAGAGGAAAACCCTAATCTAGAGGGAGATATAAAAGGTCCTTTGGAGACCCAGGTAAGGGGTTCGAAAACTGAATTCCTAACTTTATTCTTTTACAGAACTTCTATTGCTTTGTCAGATTCCCTCTGATCACTCACTTAAGCATCAGAGCGTGTGTGGCAAGAACCACACCGGTGTACAGTGTTTGCTTCTTATTTGCAGGTCACGTCTTCCCCGGATTCAATAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGTGCTTGATCGGATTTTGCCATCAATAGTTGGTGTCATCTGTGGGCAAGAAAGTTGGCTTGTGAGCACTGCACATTGGTGTGAAGGATAGCTAGTAGAAGAATGGAGAAGGAGAATCCAGAGGGAGAGGGAGGTCCTCGGCCTCAGGCTTATGCCTAAGAGATAGAAATAGCAGCTCTCAAGGGAAGAGTGAATGAGATGGGGCAAATCTTAGCCGAGATTCTGAGCATCTTGAAACAGCCGAATCCCAGCATGAGGTACCAAAAGAGCCTCCCACGCAATCAAGAGAAAGAAAAAGAGGTTTTGGAAGAAGAAACAAGGGAAACAGACAGCGTTACCAGCAAATTGCAGAAACCAGGGGGTAACAAGGAATTGGATTTGAAGGATCCAGGGCCGAGCAAACGAAGGGATCATAAGGGTGCACTTGACGCTCTAGATGAAACCAGTACAGTGGGTTCGCACAAGATGGCTGAGGCCGAAGCCAGAATTGGGGCAGAGATTGAACTTGAGGCAAGAGTCCGGGCTGAAGTTGAGGCTAAGGTGAGGGCAAAAGCCGGAGCCGCGGCCAAAGCTAAGGTCGAGGCTGAGGCCGAGGCCAAAGTCAAAGCTAGGGTTCAAGAAAAGATGACCAGAGGAGGTCCTAACTAGGGGCTAGAGGTTCAGGGAAACACACAGCCCATGGATGCAGACAAATAGAATCTAGAGGATCTAATTGGGCAAGCCAATCTGCCGTTTACTGATGAGATCATGTAGGCAGAGGTTCCGCACAAGTTCAAGTTGCCAACTTTCCTGCAATATGTGGGAAGAAAGATCCGGTTCAGAATCTAGACACCTACCGGTCGTGGATGGAGTTTCATGGGGCTTTCGAGGCGACCAAGTGTCGTGCTTTCTCTCTAACCTTGACGGGAATAACACGACAGTGGTACAACAAGTTGCCACGGAAGTCCATCGTGTCGTTCAAAGAGTTATTGCGAAAATTTGCCACACAGTTTTTAGGGCAAGAGTGAAGGGTTGAAATCCCTTTGGCAGTGGACTCAATCAAGACCGATCTCGAATTTAATTTCAAAAACGAAAAACCAATACGTTGGCAACAAAATTTAGAAACTATTTCTAAATAAAATACAGATTAAGCATGCTAATTAAAAGATCTAAAACCTATTTAGATCAAGAAACTTACTTGGATCGGAGACCGAAAACATTGCACGATGCTCCAATTCACATACTTCTTCCTCCCAACGAACACACCACGTCGGATCACCCGCTATGACTCTTGGGCTATGAAATCCGGCTTGTGGGAGCCAAAACTTGTCTTGGAAGAGAATTTACAGCAAACAATGTGGCTGTTATTGAGAGGGATTTGAGAGCGATTTCCAGAGAGAGATCTTTTGTGTTTTGCGTGAGGGGAAAAAATGATCGATTGATCCAACCCCCATCAGGTCACCATGTATGATTAGGTTGGGAAGTTACAATTAACTTCCCTAACCAATCCTGGCCTTTGATCTAAATCAATTAGATCTGGACCGTTAATTAATTAAATAATAATTAATTAATTAATTTAATTAAATCAATATTAATTAAATCAATTATAATATAAAGTTTTTAATTCAATTTAAATCATATTTAATTGAATTAAATTGACCATTTAATTAATTCTCAATTAATTGAATCCCACACTAATTAAATATCAAATATTTAATTAATTTTATAATTGAATCATATTCAATTTTATCTCTCTCATTTAACCTAAAATTTTAATGTGCATCAAAATGTAAGGGTGTAAAAGTTTCGGGTCGGGTCGGTTTGACCGACCCAACCCGACATGGGGTCGGTTGTAGGAACAGCCCGACCTGACCTAACCCGAACCGATCGGGTCGTGTCGGTTCAGGTAATATTTTTTCGTTTTGACAATCGTTCTCCTCTCCCGATGAAAATTGGGGATTCTGAAGTAAGGAAGGATTTGGGTTAGAGTAGCGGAGAGAGGAGTAGAAAAGCTTGTCCGACGATGAAGGCACAGCGGCAAGCGCAACGACGCCGGCGAGAAAGAGGAACGATTTACCGGCTGAAGCAAAGGAAACCGAACCCATCGAAAACGAAAACGAAAACGAAAGCGACGATGGCAATGAGCGATTGCCGGTGAAGTGGTTTCGGTTGCCGGTGAAAGCGAGATTAGGCTTTGGTCGGAGGTGA

mRNA sequence

ATGGTTAACCAAGATCTCAAGAACAGCAATAAACCCATCAAAATCAGAGAAGTTTGGGCCTCGAATCTCGAATCTGAGTTCGAGTTGATCCGCGATGTCATCGATCACTTCCCTTGCGTTTCAATGGACACCGAGTTTCCCGGAATCGTTTTCACCGACCCGGCCAGACCCTACAACGCTCAGAATCGCCCCTCCGATCACTACAGACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATCCAGATCGGCATCACTCTCTCCAATTCCGACGGCAACCTCCCGGATCTCGGCACCGACGACAGCCGTTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTGGCGCGTGACTTCCACGCGCCGGACTCCATCGAGCTTCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGAGTCGAAGGGATCGACTCGTGCCGGTTCGCCGAGTTGATGATGTCATCCGGACTCGTTTGTAACGACTCAGTGAGTTGGGTGACCTTTCACAGCGCCTACGATTTTGGATATTTGGTTAAGATTTTGACTCAACAGAGCCTTCCGAATCGGCTAGAGGAATTCCTCGGCGTTCTCAGGGTTTTCTTTGGCGATTACGTGTACGATGTGAAGCACATGATGCGATTCTGTAAGAGCCTCTACGGCGGTTTGGACCGGATCGCGAAGATTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGTTGACGTGGCATGCGTTTCAGAAGATGAGGGATACGTTTTTTGTACAGGAGGAGGTGGAGAAACATGCTGGCGTGTTGTATGGATTGGAGAAACCAGGGGGTAACAAGGAATTGGATTTGAAGGATCCAGGGCCGAGCAAACGAAGGGATCATAAGGGTGCACTTGACGCTCTAGATGAAACCAGTACAGTGGGTTCGCACAAGATGGCTGAGGCCGAAGCCAGAATTGGGGCAGAGATTGAACTTGAGGCAAGAGTCCGGGCTGAAGTTGAGGCTAAGAAAAGCTTGTCCGACGATGAAGGCACAGCGGCAAGCGCAACGACGCCGGCGAGAAAGAGGAACGATTTACCGGCTGAAGCAAAGGAAACCGAACCCATCGAAAACGAAAACGAAAACGAAAGCGACGATGGCAATGAGCGATTGCCGGTGAAGTGGTTTCGGTTGCCGGTGAAAGCGAGATTAGGCTTTGGTCGGAGGTGA

Coding sequence (CDS)

ATGGTTAACCAAGATCTCAAGAACAGCAATAAACCCATCAAAATCAGAGAAGTTTGGGCCTCGAATCTCGAATCTGAGTTCGAGTTGATCCGCGATGTCATCGATCACTTCCCTTGCGTTTCAATGGACACCGAGTTTCCCGGAATCGTTTTCACCGACCCGGCCAGACCCTACAACGCTCAGAATCGCCCCTCCGATCACTACAGACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATCCAGATCGGCATCACTCTCTCCAATTCCGACGGCAACCTCCCGGATCTCGGCACCGACGACAGCCGTTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTGGCGCGTGACTTCCACGCGCCGGACTCCATCGAGCTTCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGAGTCGAAGGGATCGACTCGTGCCGGTTCGCCGAGTTGATGATGTCATCCGGACTCGTTTGTAACGACTCAGTGAGTTGGGTGACCTTTCACAGCGCCTACGATTTTGGATATTTGGTTAAGATTTTGACTCAACAGAGCCTTCCGAATCGGCTAGAGGAATTCCTCGGCGTTCTCAGGGTTTTCTTTGGCGATTACGTGTACGATGTGAAGCACATGATGCGATTCTGTAAGAGCCTCTACGGCGGTTTGGACCGGATCGCGAAGATTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGTTGACGTGGCATGCGTTTCAGAAGATGAGGGATACGTTTTTTGTACAGGAGGAGGTGGAGAAACATGCTGGCGTGTTGTATGGATTGGAGAAACCAGGGGGTAACAAGGAATTGGATTTGAAGGATCCAGGGCCGAGCAAACGAAGGGATCATAAGGGTGCACTTGACGCTCTAGATGAAACCAGTACAGTGGGTTCGCACAAGATGGCTGAGGCCGAAGCCAGAATTGGGGCAGAGATTGAACTTGAGGCAAGAGTCCGGGCTGAAGTTGAGGCTAAGAAAAGCTTGTCCGACGATGAAGGCACAGCGGCAAGCGCAACGACGCCGGCGAGAAAGAGGAACGATTTACCGGCTGAAGCAAAGGAAACCGAACCCATCGAAAACGAAAACGAAAACGAAAGCGACGATGGCAATGAGCGATTGCCGGTGAAGTGGTTTCGGTTGCCGGTGAAAGCGAGATTAGGCTTTGGTCGGAGGTGA

Protein sequence

MVNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLEKPGGNKELDLKDPGPSKRRDHKGALDALDETSTVGSHKMAEAEARIGAEIELEARVRAEVEAKKSLSDDEGTAASATTPARKRNDLPAEAKETEPIENENENESDDGNERLPVKWFRLPVKARLGFGRR

Homology

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BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 6.8e-109
Identity = 194/276 (70.29%), Postives = 226/276 (81.88%), Query Frame = 0


Query: 3   NQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQN 62
           N+DLK     +  REVWA NLESEFELI ++ID +P +SMDTEFPG++F    R  N   
Sbjct: 7   NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN--- 66

Query: 63  RPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSR-FIWEFNFMDFDVARDFHA 122
            P D Y LLK+NVDAL+LIQ+G+TLS+ +GNLPDLG D  R FIWEFNF DFDVARD HA
Sbjct: 67  -PDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHA 126

Query: 123 PDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 182
           PDSIELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KIL
Sbjct: 127 PDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKIL 186

Query: 183 TQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFC-KSLYGGLDRIAKILNVNRAVGKCHQ 242
           T++ LP  L EF  V+RV FG+ VYDVKHMM+FC + L+GGLDR+A+ L VNRAVGKCHQ
Sbjct: 187 TRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQ 246

Query: 243 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQ+MRD +FVQ+  EKHAGVLYGLE
Sbjct: 247 AGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLE 278

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BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.2e-107
Identity = 189/266 (71.05%), Postives = 223/266 (83.83%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSDHYRLLK 72
           I IR+VWA NLESEF+LIR +++ +P +SMDTEFPG+++          N P+  Y LLK
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGN-PNYLYNLLK 71

Query: 73  SNVDALNLIQIGITLSNSDGNLPDL-GTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           SNVDAL+LIQ+G+TLS++DGNLPDL G  + R+IWEFNF DFDV RD HAPDSIELLRR 
Sbjct: 72  SNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRH 131

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT++ LP  L 
Sbjct: 132 GIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALR 191

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKS-LYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWH 252
           EFLG+LR FFGD VYDVKH+MRFC+  LYGGLDR+A+ L VNRAVGKCHQAGSDSLLTW 
Sbjct: 192 EFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQ 251

Query: 253 AFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AFQ+MRD +FV++  EKHAGVLYGLE
Sbjct: 252 AFQRMRDLYFVEDGAEKHAGVLYGLE 276

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BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 2.5e-79
Identity = 150/269 (55.76%), Postives = 196/269 (72.86%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA-QNRPSDHYRLL 72
           I+IREVW  NLESE  LIR+V+D FP V+MDTEFPGIV     RP    +     HY  L
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYETL 69

Query: 73  KSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           K+NV+ L +IQ+G+T S+  GNLP  GTD+   IW+FNF +FD+  D +A DSIELLR+ 
Sbjct: 70  KTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQS 129

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q+LP    
Sbjct: 130 GIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQT 189

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHA 252
            F  ++ V+F   VYD+KH+M+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   
Sbjct: 190 GFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCT 249

Query: 253 FQKMRDTFFVQEEVEKHAGVLYGLEKPGG 281
           F+K+++ FF+   +EK++GVLYGL    G
Sbjct: 250 FRKLQENFFI-GSMEKYSGVLYGLGVENG 271

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BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.1e-78
Identity = 149/269 (55.39%), Postives = 196/269 (72.86%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSD-HYRLL 72
           I+IREVW  NL+ E +LIRDV+D FP V+MDTEFPGIV     RP       +D HY  L
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYETL 69

Query: 73  KSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           K+NV+ L +IQ+G+T SN  GNLP  GT D   IW+FNF +FD+  D  A DSIELL++ 
Sbjct: 70  KTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q+LP+   
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHA 252
           +F  ++ V+F   VYD+KH+M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 253 FQKMRDTFFVQEEVEKHAGVLYGLEKPGG 281
           F+K+++ FFV   + K++GVLYGL    G
Sbjct: 250 FRKLKENFFV-GPLHKYSGVLYGLGVENG 270

[Close]

BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.1e-74
Identity = 142/263 (53.99%), Postives = 187/263 (71.10%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSDHYRLLK 72
           I IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P   +   N    +YR LK
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVL-KPVATFKYNN--DLNYRTLK 69

Query: 73  SNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQG 132
            NVD L LIQ+G+T S+ +GNLP  GT D   IW+FNF +F++  D +A +SIELLR+ G
Sbjct: 70  ENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCG 129

Query: 133 IDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLEE 192
           IDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT + LP +  +
Sbjct: 130 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 189

Query: 193 FLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHAF 252
           F  +L V+F   VYD+KH+M FC  L+GGL+R+A+++ V R VG CHQAGSDSLLT  +F
Sbjct: 190 FFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSF 249

Query: 253 QKMRDTFFVQEEVEKHAGVLYGL 276
           +K+++ +F     EK+ GVLYGL
Sbjct: 250 RKLKERYF-PGSTEKYTGVLYGL 265

[Close]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 9.5e-146
Identity = 251/276 (90.94%), Postives = 267/276 (96.74%), Query Frame = 0


Query: 1   MVNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA 60
           MV QDLKN++KPI+IREVWASNLESEFELIRD+ID FPCVSMDTEFPG+VFTDPA+PY+ 
Sbjct: 1   MVVQDLKNNSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHR 60

Query: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFH 120
           QNRPSDHYRLLKSNVDALNLIQIGITLS+SDGNLPDLGT  SRFIWEFNFMDFDVARD H
Sbjct: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDVH 120

Query: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+
Sbjct: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKV 180

Query: 181 LTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQ 240
           LT++SLP+RLEEFLGVLRVFFGD VYDVK+MMRFCKSLYGGLDRIAKILNV+RAVGKCHQ
Sbjct: 181 LTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQ 240

Query: 241 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQKMRDT+FVQ  +EKHAGVLYGLE
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE 276

[Close]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL
Match: A0A6J1G223 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 2.7e-140
Identity = 247/278 (88.85%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MVNQDLKNSN-KPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYN 60
           MV+ DL N++ K IKIREVWASNLESEF+LIRD+IDHFPCVSMDTEFPGIVFT P  P+N
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  AQNR-PSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARD 120
           A NR  SDHY+LLKSNVDALNLIQIGITLS+SDGNLPDLGTDDSRFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
            +APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+SLPNRL+EFLGVLRV FGD VYDVK+MMRFCKSLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           HQAGSDSLLTWHAFQKMRDTFFVQ EVEKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 5.0e-139
Identity = 244/278 (87.77%), Postives = 261/278 (93.88%), Query Frame = 0


Query: 1   MVNQDLKNSN-KPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYN 60
           MV+ DL N++ K IKIREVWASNLESEF+LIRD+IDHFPCVSMDTEFPGIVFT P  P+N
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  AQNR-PSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARD 120
           + NR  SDHY+LLKSNVDALNLIQIGITLS+SDGNLPDLGTDDSRFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
            +APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+ LPNR++EFLGVLRV FGD VYDVK+MMRFCKSLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           HQAGSDSLLTWHAFQKMRDTFFVQ EVEKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.7e-126
Identity = 222/276 (80.43%), Postives = 244/276 (88.41%), Query Frame = 0


Query: 1   MVNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA 60
           M+  DL  ++K I+IREVWASNLESEF LIRD+ID FPCVSMDTEFPG++F     P  +
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-KS 60

Query: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFH 120
            N PS HY+ LKSNVD L+LIQIGITLS+SDGNLPDLGT D+RFIWEFNF DFDVARD H
Sbjct: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           AP+SIELLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI
Sbjct: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQ 240
           LT Q LP  LE+FLGV+R+FFGD VYD+K++MRFC+SLYGGLDRIAK +NVNRAVGKCHQ
Sbjct: 181 LTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE
Sbjct: 241 AGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLE 275

[Close]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 8.3e-126
Identity = 221/275 (80.36%), Postives = 245/275 (89.09%), Query Frame = 0


Query: 2   VNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQ 61
           +N + ++ +KPI+IREVWASNL+SEF LI D+ID FPCVSMDTEFPG++F    +P    
Sbjct: 6   LNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTKP-KFP 65

Query: 62  NRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHA 121
           N PS HY+ LKSNVD L+LIQIGITLS+SDGNLPDLGT D+RFIWEFNF DFDVARD HA
Sbjct: 66  NHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDPHA 125

Query: 122 PDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 181
           PDSIELLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVKIL
Sbjct: 126 PDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKIL 185

Query: 182 TQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQA 241
           TQQ LP  LEEFLGV+RVFFGD VYD+K+MMRFC+SLYGGLDRIAK +NVNRAVGKCHQA
Sbjct: 186 TQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA 245

Query: 242 GSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           GSDSLLTWHAFQKMRDTFFV+ E+ KHAGVLYGLE
Sbjct: 246 GSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLE 279

[Close]

BLAST of Lcy06g013190 vs. NCBI nr
Match: XP_022142408.1 (probable CCR4-associated factor 1 homolog 11 [Momordica charantia])

HSP 1 Score: 526.6 bits (1355), Expect = 2.0e-145
Identity = 251/276 (90.94%), Postives = 267/276 (96.74%), Query Frame = 0


Query: 1   MVNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA 60
           MV QDLKN++KPI+IREVWASNLESEFELIRD+ID FPCVSMDTEFPG+VFTDPA+PY+ 
Sbjct: 1   MVVQDLKNNSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHR 60

Query: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFH 120
           QNRPSDHYRLLKSNVDALNLIQIGITLS+SDGNLPDLGT  SRFIWEFNFMDFDVARD H
Sbjct: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDVH 120

Query: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+
Sbjct: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKV 180

Query: 181 LTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQ 240
           LT++SLP+RLEEFLGVLRVFFGD VYDVK+MMRFCKSLYGGLDRIAKILNV+RAVGKCHQ
Sbjct: 181 LTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQ 240

Query: 241 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQKMRDT+FVQ  +EKHAGVLYGLE
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE 276

[Close]

BLAST of Lcy06g013190 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 508.4 bits (1308), Expect = 5.5e-140
Identity = 247/278 (88.85%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MVNQDLKNSN-KPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYN 60
           MV+ DL N++ K IKIREVWASNLESEF+LIRD+IDHFPCVSMDTEFPGIVFT P  P+N
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  AQNR-PSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARD 120
           A NR  SDHY+LLKSNVDALNLIQIGITLS+SDGNLPDLGTDDSRFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
            +APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+SLPNRL+EFLGVLRV FGD VYDVK+MMRFCKSLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           HQAGSDSLLTWHAFQKMRDTFFVQ EVEKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 506.5 bits (1303), Expect = 2.1e-139
Identity = 241/276 (87.32%), Postives = 263/276 (95.29%), Query Frame = 0


Query: 1   MVNQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA 60
           MV  DL  +NK IKIREVWASNLESEF+LIRD+ID FPCVSMDTEFPGIVF DPARP+N 
Sbjct: 1   MVIHDLNINNKSIKIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPARPFNF 60

Query: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFH 120
           Q++PSDHYRLLKSNVDAL+LIQIGITLS+SDGNLPDLGTDD+RFIWEFNFMDFDVARD H
Sbjct: 61  QSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVKI
Sbjct: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQ 240
           LTQ+ LP+R++EFLGVLRVFFGD VYD+K++MRFC+SLYGGLDRIAKILNVNRAVGKCHQ
Sbjct: 181 LTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQKMRDT+FVQ E++KHAGVLYGLE
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLE 276

[Close]

BLAST of Lcy06g013190 vs. NCBI nr
Match: KAG7012717.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 505.4 bits (1300), Expect = 4.7e-139
Identity = 247/278 (88.85%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 1   MVNQDLK-NSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYN 60
           MV+ DL  N  K IKIREVWASNLESEF+LIRD IDHFPCVSMDTEFPGIVFT P  P+N
Sbjct: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  AQNR-PSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARD 120
           A NR  SDHY+LLKSNVDALNLIQIGITLS+SDGNLPDLGTDDSRFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
            +APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+SLPNRL+EFLGVLRV FGD VYDVK+MMRFCKSLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           HQAGSDSLLTWHAFQKMRDTFFVQ EVEKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 504.2 bits (1297), Expect = 1.0e-138
Identity = 244/278 (87.77%), Postives = 261/278 (93.88%), Query Frame = 0


Query: 1   MVNQDLKNSN-KPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYN 60
           MV+ DL N++ K IKIREVWASNLESEF+LIRD+IDHFPCVSMDTEFPGIVFT P  P+N
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  AQNR-PSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARD 120
           + NR  SDHY+LLKSNVDALNLIQIGITLS+SDGNLPDLGTDDSRFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
            +APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+ LPNR++EFLGVLRV FGD VYDVK+MMRFCKSLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           HQAGSDSLLTWHAFQKMRDTFFVQ EVEKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 395.6 bits (1015), Expect = 4.8e-110
Identity = 194/276 (70.29%), Postives = 226/276 (81.88%), Query Frame = 0


Query: 3   NQDLKNSNKPIKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQN 62
           N+DLK     +  REVWA NLESEFELI ++ID +P +SMDTEFPG++F    R  N   
Sbjct: 7   NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN--- 66

Query: 63  RPSDHYRLLKSNVDALNLIQIGITLSNSDGNLPDLGTDDSR-FIWEFNFMDFDVARDFHA 122
            P D Y LLK+NVDAL+LIQ+G+TLS+ +GNLPDLG D  R FIWEFNF DFDVARD HA
Sbjct: 67  -PDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHA 126

Query: 123 PDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 182
           PDSIELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KIL
Sbjct: 127 PDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKIL 186

Query: 183 TQQSLPNRLEEFLGVLRVFFGDYVYDVKHMMRFC-KSLYGGLDRIAKILNVNRAVGKCHQ 242
           T++ LP  L EF  V+RV FG+ VYDVKHMM+FC + L+GGLDR+A+ L VNRAVGKCHQ
Sbjct: 187 TRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQ 246

Query: 243 AGSDSLLTWHAFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AGSDSLLTWHAFQ+MRD +FVQ+  EKHAGVLYGLE
Sbjct: 247 AGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLE 278

[Close]

BLAST of Lcy06g013190 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 390.6 bits (1002), Expect = 1.6e-108
Identity = 189/266 (71.05%), Postives = 223/266 (83.83%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSDHYRLLK 72
           I IR+VWA NLESEF+LIR +++ +P +SMDTEFPG+++          N P+  Y LLK
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGN-PNYLYNLLK 71

Query: 73  SNVDALNLIQIGITLSNSDGNLPDL-GTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           SNVDAL+LIQ+G+TLS++DGNLPDL G  + R+IWEFNF DFDV RD HAPDSIELLRR 
Sbjct: 72  SNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRH 131

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT++ LP  L 
Sbjct: 132 GIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALR 191

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKS-LYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWH 252
           EFLG+LR FFGD VYDVKH+MRFC+  LYGGLDR+A+ L VNRAVGKCHQAGSDSLLTW 
Sbjct: 192 EFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQ 251

Query: 253 AFQKMRDTFFVQEEVEKHAGVLYGLE 277
           AFQ+MRD +FV++  EKHAGVLYGLE
Sbjct: 252 AFQRMRDLYFVEDGAEKHAGVLYGLE 276

[Close]

BLAST of Lcy06g013190 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-80
Identity = 150/269 (55.76%), Postives = 196/269 (72.86%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNA-QNRPSDHYRLL 72
           I+IREVW  NLESE  LIR+V+D FP V+MDTEFPGIV     RP    +     HY  L
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYETL 69

Query: 73  KSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           K+NV+ L +IQ+G+T S+  GNLP  GTD+   IW+FNF +FD+  D +A DSIELLR+ 
Sbjct: 70  KTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQS 129

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q+LP    
Sbjct: 130 GIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQT 189

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHA 252
            F  ++ V+F   VYD+KH+M+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   
Sbjct: 190 GFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCT 249

Query: 253 FQKMRDTFFVQEEVEKHAGVLYGLEKPGG 281
           F+K+++ FF+   +EK++GVLYGL    G
Sbjct: 250 FRKLQENFFI-GSMEKYSGVLYGLGVENG 271

[Close]

BLAST of Lcy06g013190 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-79
Identity = 149/269 (55.39%), Postives = 196/269 (72.86%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSD-HYRLL 72
           I+IREVW  NL+ E +LIRDV+D FP V+MDTEFPGIV     RP       +D HY  L
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYETL 69

Query: 73  KSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           K+NV+ L +IQ+G+T SN  GNLP  GT D   IW+FNF +FD+  D  A DSIELL++ 
Sbjct: 70  KTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q+LP+   
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHA 252
           +F  ++ V+F   VYD+KH+M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 253 FQKMRDTFFVQEEVEKHAGVLYGLEKPGG 281
           F+K+++ FFV   + K++GVLYGL    G
Sbjct: 250 FRKLKENFFV-GPLHKYSGVLYGLGVENG 270

[Close]

BLAST of Lcy06g013190 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-79
Identity = 149/269 (55.39%), Postives = 196/269 (72.86%), Query Frame = 0


Query: 13  IKIREVWASNLESEFELIRDVIDHFPCVSMDTEFPGIVFTDPARPYNAQNRPSD-HYRLL 72
           I+IREVW  NL+ E +LIRDV+D FP V+MDTEFPGIV     RP       +D HY  L
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYETL 69

Query: 73  KSNVDALNLIQIGITLSNSDGNLPDLGTDDSRFIWEFNFMDFDVARDFHAPDSIELLRRQ 132
           K+NV+ L +IQ+G+T SN  GNLP  GT D   IW+FNF +FD+  D  A DSIELL++ 
Sbjct: 70  KTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQS 129

Query: 133 GIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQQSLPNRLE 192
           GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q+LP+   
Sbjct: 130 GIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQT 189

Query: 193 EFLGVLRVFFGDYVYDVKHMMRFCKSLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWHA 252
           +F  ++ V+F   VYD+KH+M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   
Sbjct: 190 DFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCT 249

Query: 253 FQKMRDTFFVQEEVEKHAGVLYGLEKPGG 281
           F+K+++ FFV   + K++GVLYGL    G
Sbjct: 250 FRKLKENFFV-GPLHKYSGVLYGLGVENG 270

The following BLAST results are available for this feature:

BLAST of Lcy06g013190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXM2	6.8e-109	70.29	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9FMS6	2.2e-107	71.05	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SKZ2	2.5e-79	55.76	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	2.1e-78	55.39	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	1.1e-74	53.99	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Lcy06g013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN71	9.5e-146	90.94	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=...	[more]
A0A6J1G223	2.7e-140	88.85	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3...	[more]
A0A6J1HU54	5.0e-139	87.77	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S...	[more]
A0A0A0LYC8	1.7e-126	80.43	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV...	[more]
A0A5A7T1W0	8.3e-126	80.36	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Lcy06g013190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142408.1	2.0e-145	90.94	probable CCR4-associated factor 1 homolog 11 [Momordica charantia]	[more]
XP_022945861.1	5.5e-140	88.85	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ...	[more]
XP_038877224.1	2.1e-139	87.32	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
KAG7012717.1	4.7e-139	88.85	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_022967098.1	1.0e-138	87.77	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]

BLAST of Lcy06g013190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44260.1	4.8e-110	70.29	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G22250.1	1.6e-108	71.05	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	1.8e-80	55.76	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.5e-79	55.39	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.5e-79	55.39	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 18..144 e-value: 2.7E-10 score: 40.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..278 e-value: 1.6E-95 score: 321.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 337..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..316
None	No IPR available	PANTHER	PTHR10797:SF10	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 6..276
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 6..276
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g013190.1	Lcy06g013190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0016740	transferase activity