Lcy06g012580 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g012580
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr06: 16514126 .. 16514941 (-)
RNA-Seq ExpressionLcy06g012580
SyntenyLcy06g012580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTGGAAAATAAGATCTAGAGAAGATTGGCTTAAGTGGGGCGACAAAAATATCAAGTGGTTCCACTCAAGAGCCACTCACCGGAAAAGGAAAAATGAGATAAAAGGTTTGGAAGATGACCACAGCAAATGGATCAATGATGAAGAAGAGATCGGTTCTGCAACCAACTCTTATTTCATGAAGCTGTTTTCCTCCTCTCTCCCAAATATAGAGGAGATAAACAAGACGACTAATGTTGTGGACAAGAAGCTGACCGAGGAGCAAGTGATATGGATGGATAGGGATTTTACAAAGGAAGAGATTGAAGCGGCTCTGAAAAGCATGAACCCACCAAAGGCTTCGGGTCCTGATGGAGCCCATGCTTTATTTTTTCAGAAATACTGGGGTATCTTGGGCATAGACATTTCAGATATGTGCTTGAAAGTGTTGAATCAGGGGGAAAGTGTGGAAGAGCTTAACAACACATTAATATCCTTAATTCCAAAATGCAAGGACCCAAAGAGGATGTCAGATTTCAGACCGATTACTCTATGCAACGTGACCTATAAGTTGATAGCAAAAACCTTAGCTAACCGCCTCAAGAAAGTCTTAAACTCGATCATTGCTCAAAACCAATCAGCCTTCGTCTCGGAAAGACTCATCATCACGGATAATGTGATCCTCGATTTTGAAAGCATCCATGCCCCTGACAATAGAAAAATGGGGAAAAAAGGTTTTTTAGCTATGAAATTGGACATGGGTAAAGCGTTTGATAGGGTCGAGTGGGCTTACATTGATAAAATTATGTCTCATATGGGTTTCAGTGATAAGTGA

mRNA sequence

ATGTATTGGAAAATAAGATCTAGAGAAGATTGGCTTAAGTGGGGCGACAAAAATATCAAGTGGTTCCACTCAAGAGCCACTCACCGGAAAAGGAAAAATGAGATAAAAGGTTTGGAAGATGACCACAGCAAATGGATCAATGATGAAGAAGAGATCGGTTCTGCAACCAACTCTTATTTCATGAAGCTGTTTTCCTCCTCTCTCCCAAATATAGAGGAGATAAACAAGACGACTAATGTTGTGGACAAGAAGCTGACCGAGGAGCAAGTGATATGGATGGATAGGGATTTTACAAAGGAAGAGATTGAAGCGGCTCTGAAAAGCATGAACCCACCAAAGGCTTCGGGTCCTGATGGAGCCCATGCTTTATTTTTTCAGAAATACTGGGGTATCTTGGGCATAGACATTTCAGATATGTGCTTGAAAGTGTTGAATCAGGGGGAAAGTGTGGAAGAGCTTAACAACACATTAATATCCTTAATTCCAAAATGCAAGGACCCAAAGAGGATGTCAGATTTCAGACCGATTACTCTATGCAACGTGACCTATAAGTTGATAGCAAAAACCTTAGCTAACCGCCTCAAGAAAGTCTTAAACTCGATCATTGCTCAAAACCAATCAGCCTTCGTCTCGGAAAGACTCATCATCACGGATAATGTGATCCTCGATTTTGAAAGCATCCATGCCCCTGACAATAGAAAAATGGGGAAAAAAGGTTTTTTAGCTATGAAATTGGACATGGGTAAAGCGTTTGATAGGGTCGAGTGGGCTTACATTGATAAAATTATGTCTCATATGGGTTTCAGTGATAAGTGA

Coding sequence (CDS)

ATGTATTGGAAAATAAGATCTAGAGAAGATTGGCTTAAGTGGGGCGACAAAAATATCAAGTGGTTCCACTCAAGAGCCACTCACCGGAAAAGGAAAAATGAGATAAAAGGTTTGGAAGATGACCACAGCAAATGGATCAATGATGAAGAAGAGATCGGTTCTGCAACCAACTCTTATTTCATGAAGCTGTTTTCCTCCTCTCTCCCAAATATAGAGGAGATAAACAAGACGACTAATGTTGTGGACAAGAAGCTGACCGAGGAGCAAGTGATATGGATGGATAGGGATTTTACAAAGGAAGAGATTGAAGCGGCTCTGAAAAGCATGAACCCACCAAAGGCTTCGGGTCCTGATGGAGCCCATGCTTTATTTTTTCAGAAATACTGGGGTATCTTGGGCATAGACATTTCAGATATGTGCTTGAAAGTGTTGAATCAGGGGGAAAGTGTGGAAGAGCTTAACAACACATTAATATCCTTAATTCCAAAATGCAAGGACCCAAAGAGGATGTCAGATTTCAGACCGATTACTCTATGCAACGTGACCTATAAGTTGATAGCAAAAACCTTAGCTAACCGCCTCAAGAAAGTCTTAAACTCGATCATTGCTCAAAACCAATCAGCCTTCGTCTCGGAAAGACTCATCATCACGGATAATGTGATCCTCGATTTTGAAAGCATCCATGCCCCTGACAATAGAAAAATGGGGAAAAAAGGTTTTTTAGCTATGAAATTGGACATGGGTAAAGCGTTTGATAGGGTCGAGTGGGCTTACATTGATAAAATTATGTCTCATATGGGTTTCAGTGATAAGTGA

Protein sequence

MYWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMKLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNVTYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLAMKLDMGKAFDRVEWAYIDKIMSHMGFSDK
Homology
BLAST of Lcy06g012580 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 69/235 (29.36%), Postives = 126/235 (53.62%), Query Frame = 0

Query: 35  IKGLEDDHSKWINDEEEIGSATNSYFMKLFSSSLPNIEEINKTTNVVD-KKLTEEQVIWM 94
           I  + ++      D EEI +   S++ +L+S+ L N++E++K  +     KL ++QV  +
Sbjct: 397 INKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHL 456

Query: 95  DRDFTKEEIEAALKSMNPPKASGPDGAHALFFQKYWGILGIDISDMCLKVLNQGESVEEL 154
           +   + +EIEA + S+   K+ GPDG  A F+Q +   L   +  +  K+  +G      
Sbjct: 457 NSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSF 516

Query: 155 NNTLISLIPK-CKDPKRMSDFRPITLCNVTYKLIAKTLANRLKKVLNSIIAQNQSAFVSE 214
               I+LIPK  KDP ++ +FRPI+L N+  K++ K LANR+++ + +II  +Q  F+  
Sbjct: 517 YEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFI-P 576

Query: 215 RLIITDNVILDFESIHAPDNRKMGKKGFLAMKLDMGKAFDRVEWAYIDKIMSHMG 268
            +    N+      IH  +  K+  K  + + LD  KAFD+++  ++ K++   G
Sbjct: 577 GMQGWFNIRKSINVIHYIN--KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSG 628

BLAST of Lcy06g012580 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-20
Identity = 78/258 (30.23%), Postives = 126/258 (48.84%), Query Frame = 0

Query: 5   IRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMKLF 64
           +RSR   L   D+  ++F++    +  + +I  L  +    + D E I     S++  LF
Sbjct: 358 VRSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLF 417

Query: 65  SS---SLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAH 124
           S    S    EE+     VV ++  E     ++   T +E+  AL+ M   K+ G DG  
Sbjct: 418 SPDPISPDACEELWDGLPVVSERRKER----LETPITLDELSQALRLMPHNKSPGLDGLT 477

Query: 125 ALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNV 184
             FFQ +W  LG D   +  +   +GE        ++SL+PK  D + + ++RP++L + 
Sbjct: 478 IEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLST 537

Query: 185 TYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFL 244
            YK++AK ++ RLK VL  +I  +QS  V  R I  DNV L  + +H    R+ G     
Sbjct: 538 DYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIF-DNVFLIRDLLHFA--RRTG-LSLA 597

Query: 245 AMKLDMGKAFDRVEWAYI 260
            + LD  KAFDRV+  Y+
Sbjct: 598 FLSLDQEKAFDRVDHQYL 607

BLAST of Lcy06g012580 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.3e-18
Identity = 65/241 (26.97%), Postives = 122/241 (50.62%), Query Frame = 0

Query: 29  RKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMKLFSSSLPNIEEINKTTNVVD-KKLTE 88
           ++ KN+I  +++D      D  EI +    Y+  L+++ L N+EE++   +     +L +
Sbjct: 384 KREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQ 443

Query: 89  EQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHALFFQKYWGILGIDISDMCLKVLNQG 148
           E+V  ++R  T  EI A + S+   K+ GPDG  A F+Q+Y   L   +  +   +  +G
Sbjct: 444 EEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEG 503

Query: 149 ESVEELNNTLISLIPK-CKDPKRMSDFRPITLCNVTYKLIAKTLANRLKKVLNSIIAQNQ 208
                     I LIPK  +D  +  +FRPI+L N+  K++ K LANR+++ +  +I  +Q
Sbjct: 504 ILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQ 563

Query: 209 SAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLAMKLDMGKAFDRVEWAYIDKIMSHM 268
             F+   +    N+      I   +  K   K  + + +D  KAFD+++  ++ K ++ +
Sbjct: 564 VGFI-PGMQGWFNIRKSINVIQHINRAK--DKNHVIISIDAEKAFDKIQQPFMLKTLNKL 621

BLAST of Lcy06g012580 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-17
Identity = 64/246 (26.02%), Postives = 125/246 (50.81%), Query Frame = 0

Query: 27  THRKR-KNEIKGLEDDHSKWINDEEEIGSATNSYFMKLFSSSLPNIEEINKTTNVVD-KK 86
           T +KR K+ I  + + + +   D  EI    N Y+ KL+S    N++EI++        +
Sbjct: 380 TRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPR 439

Query: 87  LTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHALFFQKYWGILGIDISDMCLKVL 146
           L++++V  ++R  +  EI + ++++   K+ GPDG  + F+Q +   L   + ++   + 
Sbjct: 440 LSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIE 499

Query: 147 NQGESVEELNNTLISLIPK-CKDPKRMSDFRPITLCNVTYKLIAKTLANRLKKVLNSIIA 206
            +G          I+LIPK  KDP R  ++RPI+L N+  K++ K L NR+++ +  II 
Sbjct: 500 KEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIH 559

Query: 207 QNQSAFV--SERLIITDNVILDFESIHAPDNRKMGKKGFLAMKLDMGKAFDRVEWAYIDK 266
            +Q  F+  S+        I   + I+     K+  K  + + +D  KAFD ++  ++ +
Sbjct: 560 HDQVGFIPGSQGWFNIRKSINVIQHIN-----KLKNKDHMILSIDAEKAFDNIQHPFMIR 619

Query: 267 IMSHMG 268
            +  +G
Sbjct: 620 TLKKIG 620

BLAST of Lcy06g012580 vs. ExPASy TrEMBL
Match: A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.6e-69
Identity = 135/270 (50.00%), Postives = 193/270 (71.48%), Query Frame = 0

Query: 1   MYWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYF 60
           ++W  RS+  WLK GD+N K+FH+RA+ R+++N I G+ D   +W  D + I +A  +YF
Sbjct: 213 IFWGQRSKVHWLKEGDRNTKFFHARASERRKQNTISGVWDKFGRWCEDRDSIANAAVTYF 272

Query: 61  MKLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGA 120
             ++S+S P++  +++ T  +   +TEE    + R FT+EEI  ALK ++P K+ GPDG 
Sbjct: 273 EDIYSTSNPSM--VDEVTAAIPTMITEEMNTELSRCFTREEIVTALKQIHPTKSPGPDGM 332

Query: 121 HALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCN 180
            A+FFQKYW I+G ++S+M L VLN G S++ +N T I LIPK  +PKRM+DFRPI+LCN
Sbjct: 333 SAIFFQKYWDIVGSNVSNMILNVLNYGMSLDVINKTNIVLIPKTSNPKRMTDFRPISLCN 392

Query: 181 VTYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGF 240
           V YKLI+KTLANRLK  L  II +NQSAF ++RL ITDNV++ +E +H   ++K GK  F
Sbjct: 393 VIYKLISKTLANRLKAFLPLIITENQSAFTADRL-ITDNVLIAYELMHYLKHKKDGKDCF 452

Query: 241 LAMKLDMGKAFDRVEWAYIDKIMSHMGFSD 271
           +A KLDM KAFDRVEW +I+++M  MGF++
Sbjct: 453 MATKLDMSKAFDRVEWGFIERVMRKMGFNE 479

BLAST of Lcy06g012580 vs. ExPASy TrEMBL
Match: A0A7N2LT95 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.6e-67
Identity = 130/268 (48.51%), Postives = 186/268 (69.40%), Query Frame = 0

Query: 3   WKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMK 62
           WK    E WL+ GDKN K+FH  AT RKRKN IKGL+DD   W  +E ++      Y+ +
Sbjct: 580 WK-AEMESWLQSGDKNTKFFHGTATQRKRKNFIKGLKDDEGVWHEEENQVSGLLIEYYSQ 639

Query: 63  LFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHA 122
           LFS+S P+  + ++  + VD  +TEE  + + R +T ++++AA++ M P KA GPDG   
Sbjct: 640 LFSTSHPH--DFDRILDGVDTIVTEEMRVELVRPYTSDKVDAAIEEMAPLKAPGPDGMPP 699

Query: 123 LFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNVT 182
           LF+Q YW  +G+D+    L  LN G  ++ +N+T I+LIPK  +PK++SDFRPI+LCNV 
Sbjct: 700 LFYQTYWSDVGVDVHQAVLSSLNSGSILKSINHTFITLIPKVNNPKKVSDFRPISLCNVI 759

Query: 183 YKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLA 242
           YK+I+K +ANRLK +LNSII++ QSAF + RL ITDN+++ FES+H       G+KGF+A
Sbjct: 760 YKIISKVIANRLKPLLNSIISKTQSAFTANRL-ITDNILIAFESLHHMKTNCTGRKGFMA 819

Query: 243 MKLDMGKAFDRVEWAYIDKIMSHMGFSD 271
           +KLDM KA+DRVEW +++KI+  MGF D
Sbjct: 820 LKLDMSKAYDRVEWVFLEKILLKMGFQD 843

BLAST of Lcy06g012580 vs. ExPASy TrEMBL
Match: A0A2N9GIC4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27062 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 132/269 (49.07%), Postives = 185/269 (68.77%), Query Frame = 0

Query: 3   WKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMK 62
           W+ RSR  WL  GD+N K+FHSRAT R R+N I GL+DD  KW +  + + S    Y+  
Sbjct: 685 WRQRSRSLWLANGDRNTKYFHSRATQRHRRNHIHGLKDDMDKWHDTNDGMASLLIKYYTS 744

Query: 63  LFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHA 122
           LFS+S P  ++I +    V   +TE+    + R FT  E+E ALK M P KA GPDG   
Sbjct: 745 LFSTSHP--DQIAEVVTHVPHVVTEDMNKALIRKFTAPEVELALKQMAPTKAPGPDGMPP 804

Query: 123 LFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNVT 182
           +F+QK+W ++G D++   L  LN G  ++ +N+T ISLIPK K+P+R+++FRPI+LCNV 
Sbjct: 805 VFYQKFWHVVGGDVTKAVLSCLNSGRILKSINHTFISLIPKTKNPERVTEFRPISLCNVI 864

Query: 183 YKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLA 242
           YKLI+K LANRLK +L  +++ +QSAFV  RL ITDNV++ FE++H   + K+G+ G +A
Sbjct: 865 YKLISKVLANRLKLILPQVVSDSQSAFVPGRL-ITDNVLVAFETLHYMHHNKIGRDGAMA 924

Query: 243 MKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
           +KLDM KA+DRVEW +++KIMS MGF  K
Sbjct: 925 LKLDMSKAYDRVEWCFLEKIMSQMGFHKK 950

BLAST of Lcy06g012580 vs. ExPASy TrEMBL
Match: A0A2N9G3I8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21623 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 126/270 (46.67%), Postives = 185/270 (68.52%), Query Frame = 0

Query: 2    YWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFM 61
            +W+ RSR  WL  GD+N K+FH RAT R+R+N +  L D+  +W    EEI      Y+ 
Sbjct: 781  FWRQRSRTSWLAQGDRNTKYFHGRATQRRRRNSVSKLCDERGRWHESNEEIAELMIEYYT 840

Query: 62   KLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAH 121
             LF++S P    + + T+ V K +T E    + R+F  EE+E A++ M P KA GPDG  
Sbjct: 841  TLFTTSNPT--HLAEATSEVQKVVTLEMNNNLTREFKAEEVEQAIQQMAPSKAPGPDGMP 900

Query: 122  ALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNV 181
             +F+QKYW ++G D++   L  LN G  ++ +N+T I+LIPK K+P++++DFRPI+LCNV
Sbjct: 901  PIFYQKYWHVVGSDVTTAVLSCLNSGSLLKSINHTFITLIPKVKNPEKVTDFRPISLCNV 960

Query: 182  TYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFL 241
             YKL++K LANRLK +L  +++ +QSAFV  RL ITDNV++ FE++H   + K+G++G +
Sbjct: 961  IYKLVSKVLANRLKVILPQLVSDSQSAFVPGRL-ITDNVLVAFETLHHMHHNKIGREGAM 1020

Query: 242  AMKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
            AMKLDM KA+DRVEW+Y+++IM  MGF  K
Sbjct: 1021 AMKLDMSKAYDRVEWSYLEQIMKKMGFHQK 1047

BLAST of Lcy06g012580 vs. ExPASy TrEMBL
Match: A0A2K3NDN7 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024447 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 8.5e-66
Identity = 128/269 (47.58%), Postives = 182/269 (67.66%), Query Frame = 0

Query: 3   WKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMK 62
           W+ RSR  WLK GDKN K+FH +A+ RK+ N IK L+DD   W + ++ +      YF+ 
Sbjct: 303 WRQRSRATWLKDGDKNTKFFHGKASQRKKTNCIKKLKDDDGIWWSGQDNVEKVFLHYFVD 362

Query: 63  LFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHA 122
           LFSSS P   ++ +T   + K+L  + V W ++ FT EEI+A +  M+P KA GPDG  A
Sbjct: 363 LFSSSNP--VDVEQTCEAIQKRLLPDHVEWCNQRFTAEEIKATVDQMHPLKAPGPDGLPA 422

Query: 123 LFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNVT 182
           LFFQ+YW I+G DI D+ L +LN+G+S E +N T I+LIPKCK+P     FRPI+LCNVT
Sbjct: 423 LFFQEYWHIVGNDIIDLSLGILNEGKSPEVINKTFIALIPKCKNPSAPKQFRPISLCNVT 482

Query: 183 YKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLA 242
            K++ KT+ANR+K +L  ++ + QSAFV  RL ITDN ++  E  H    +  GK+G +A
Sbjct: 483 MKIVTKTIANRIKSILPDVVDEEQSAFVKGRL-ITDNALIAMECFHWLKKKVKGKRGTMA 542

Query: 243 MKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
           +KLDM KA+DR+EWA+I  ++ +MGF ++
Sbjct: 543 LKLDMAKAYDRMEWAFIRGVLHNMGFPER 568

BLAST of Lcy06g012580 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 290.0 bits (741), Expect = 2.1e-74
Identity = 144/270 (53.33%), Postives = 197/270 (72.96%), Query Frame = 0

Query: 2   YWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFM 61
           YW  R++  WLK GD+N K+FH++A+ R+++N I G+ D+  +W ++EE I  A  SYF 
Sbjct: 299 YWGQRAKAHWLKEGDRNTKFFHAQASERRKQNTIVGIWDEQGRWCDNEESIAQAAISYFN 358

Query: 62  KLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAH 121
            ++SSS P+  +I + T  +  K+TEE    + R+FTKEE+  ALK ++P KA GPDG  
Sbjct: 359 NIYSSSHPS--QIEEVTEAIPFKVTEEMNESLIREFTKEEVAVALKQIHPNKAPGPDGMS 418

Query: 122 ALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNV 181
           A+FFQKYW I+G +++DM L VLN    + ELN T ISLIPK  +PKRM+DFRPI+LCNV
Sbjct: 419 AVFFQKYWSIVGNNVTDMVLNVLNHNLPIPELNKTNISLIPKTNNPKRMTDFRPISLCNV 478

Query: 182 TYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFL 241
            YKLI+K LANRLK +L  II++NQSAF S+RL ITDNV++ FE +H  D++  GK+GF+
Sbjct: 479 VYKLISKILANRLKPLLPHIISENQSAFTSDRL-ITDNVLVAFELMHYLDHKTAGKEGFM 538

Query: 242 AMKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
           A+KLDM KAFDRVEW +I K+M  MGF ++
Sbjct: 539 AIKLDMSKAFDRVEWGFIAKVMEQMGFCNR 565

BLAST of Lcy06g012580 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 278.1 bits (710), Expect = 8.1e-71
Identity = 139/269 (51.67%), Postives = 191/269 (71.00%), Query Frame = 0

Query: 3   WKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFMK 62
           W+ RSR  WL  GD+N K+FH++A+ R+R+N I G+ D++  W +  E I     SYF  
Sbjct: 176 WQQRSRVQWLGLGDRNTKYFHTKASDRRRRNTINGIMDENGNWQDSTEGIAKVAVSYFQT 235

Query: 63  LFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGAHA 122
           ++SSS+P    I++  + +   +TEE    + ++FT+EEIE AL  M+P KA GPDG  A
Sbjct: 236 IYSSSVPT--RISEVLDAIPTTVTEEMNHSLIQEFTREEIETALNQMHPTKAPGPDGMSA 295

Query: 123 LFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCNVT 182
           +FFQKYW I+G DI  M L VLN   S+ E+N T I+L+PK K+P +MSDFRPI+LCNV 
Sbjct: 296 IFFQKYWNIVGNDIVCMVLDVLNSNMSMVEINKTNITLVPKIKNPTKMSDFRPISLCNVV 355

Query: 183 YKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLA 242
           YKLI+K LANRLK +L  II++NQSAF+S RL ITDNV++ FE +H  +++K GK+GF A
Sbjct: 356 YKLISKVLANRLKNILPQIISENQSAFLSGRL-ITDNVLVAFELMHYLEHKKEGKEGFAA 415

Query: 243 MKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
           +KLDM KA+DRVEW +I ++M  MGF +K
Sbjct: 416 IKLDMSKAYDRVEWGFIKQVMEKMGFHEK 441

BLAST of Lcy06g012580 vs. NCBI nr
Match: XP_023908235.1 (uncharacterized protein LOC112019924 [Quercus suber])

HSP 1 Score: 268.1 bits (684), Expect = 8.4e-68
Identity = 131/270 (48.52%), Postives = 184/270 (68.15%), Query Frame = 0

Query: 1   MYWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYF 60
           +YW  RSR  WLK GDKN K+FHS+A+ R+R+N IKG+      W+ + EEI +    YF
Sbjct: 632 IYWAQRSRIPWLKHGDKNTKYFHSKASQRRRRNFIKGIRSAQGNWVEEMEEIANVATGYF 691

Query: 61  MKLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGA 120
             LF +   N +++ +  N V +K+T E    +  +F  EE++ AL  M P KA GPDG 
Sbjct: 692 DNLFCAG--NCDQMEECLNAVPRKVTPEMHDTLSSEFNAEEVKLALFQMGPTKAPGPDGM 751

Query: 121 HALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCN 180
           +ALF+QK+W ++G  + D  L  LN G    ++N+T I LIPK K+P++MSDFRPI+LCN
Sbjct: 752 NALFYQKFWHVVGDTVVDAVLDFLNNGHMAPDINHTYIVLIPKVKNPEKMSDFRPISLCN 811

Query: 181 VTYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGF 240
           V YK+I+K L NRLK+VL +II+  QSAFV  RL ITDNV+L +E++H   +RK GKKG+
Sbjct: 812 VIYKIISKVLVNRLKQVLPNIISPTQSAFVPGRL-ITDNVLLAYETLHTMHSRKKGKKGY 871

Query: 241 LAMKLDMGKAFDRVEWAYIDKIMSHMGFSD 271
           +A+KLD+ KA+DRVEW ++  IM  +GF +
Sbjct: 872 MALKLDVSKAYDRVEWPFLQGIMQRLGFPE 898

BLAST of Lcy06g012580 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-67
Identity = 130/271 (47.97%), Postives = 191/271 (70.48%), Query Frame = 0

Query: 1   MYWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYF 60
           +YWK RSR DWLK GDKN K+FHS+A+ R+RKN+I G+EDD   W++D E I      +F
Sbjct: 427 VYWKQRSRADWLKEGDKNTKFFHSKASARRRKNKIWGVEDDQGNWVDDPEGIEGEFCGFF 486

Query: 61  MKLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGA 120
            +LF+SS P+  +I++    +  K+++E    ++  FT E+I  AL  M P KA GPDG 
Sbjct: 487 QQLFTSSNPSQTQISEALKGLLPKVSQEMNTHLEEPFTPEDITRALSEMCPTKAPGPDGL 546

Query: 121 HALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCN 180
            A FFQK+W I+G  ++  CL +LN+  +++ LN+T I+LIPK + P+++ +FRPI+LCN
Sbjct: 547 PAAFFQKHWQIVGEGLTKTCLHILNEQGTLDSLNHTFIALIPKVEKPRKVMEFRPISLCN 606

Query: 181 VTYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGF 240
           V Y+++AK +ANRLK +LN II+ NQSAF+  RL ITDNVI+ +E +H     K  + G 
Sbjct: 607 VVYRIVAKAIANRLKPILNHIISPNQSAFIPNRL-ITDNVIIGYECLHKIRLSKGRRNGL 666

Query: 241 LAMKLDMGKAFDRVEWAYIDKIMSHMGFSDK 272
           +A+KLD+ KA+DRVEW ++++ MS++GFS K
Sbjct: 667 VALKLDISKAYDRVEWNFLEQTMSNLGFSAK 696

BLAST of Lcy06g012580 vs. NCBI nr
Match: XP_030923330.1 (uncharacterized protein LOC115950239 [Quercus lobata])

HSP 1 Score: 264.6 bits (675), Expect = 9.3e-67
Identity = 130/268 (48.51%), Postives = 186/268 (69.40%), Query Frame = 0

Query: 1   MYWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYF 60
           +YW  RSR +WL+ GD+N K+FH++A+ R+RKN I+G+ +   +W+ + EE+G     YF
Sbjct: 735 IYWAQRSRINWLRHGDRNTKFFHAKASQRRRKNFIRGIRNSQGQWVENLEEVGQVAADYF 794

Query: 61  MKLFSSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDGA 120
             LF +     +++ +  + VD K+TE+   ++   FT EE++AAL  M P KA GPDG 
Sbjct: 795 DNLFQAGAG--DQMEECLDAVDTKVTEDMREFLSNQFTAEEVQAALFQMGPTKAPGPDGM 854

Query: 121 HALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLCN 180
           +ALF+QK+W I+G  +    L  LN G  + E+N+T I LIPK ++P+RMS+FRPI+LCN
Sbjct: 855 NALFYQKFWHIVGDSVVSAVLDFLNNGNMLPEINHTNIVLIPKVQNPERMSEFRPISLCN 914

Query: 181 VTYKLIAKTLANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGF 240
           V YK+I+K LANRLK+VL  II+  QSAFV  RL ITDNV++ +E++H    RK GKKG 
Sbjct: 915 VIYKIISKVLANRLKQVLPQIISSTQSAFVPGRL-ITDNVLVAYETLHTMHARKKGKKGD 974

Query: 241 LAMKLDMGKAFDRVEWAYIDKIMSHMGF 269
           +A+KLD+ KA+DRVEW ++  IM  MGF
Sbjct: 975 VALKLDISKAYDRVEWHFLQSIMEKMGF 999

BLAST of Lcy06g012580 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-13
Identity = 49/187 (26.20%), Postives = 88/187 (47.06%), Query Frame = 0

Query: 2   YWKIRSREDWLKWGDKNIKWFHSRATHRKRKNEIKGLEDDHSKWINDEEEIGSATNSYFM 61
           +++ +SR  WL+ GD N ++FH      + KN IK L  D    + +  ++     +Y+ 
Sbjct: 434 FYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYT 493

Query: 62  KLF--SSSLPNIEEINKTTNVVDKKLTEEQVIWMDRDFTKEEIEAALKSMNPPKASGPDG 121
            L    S +   + + +  ++   +  +     +    + +EI AA+ +M   KA GPD 
Sbjct: 494 HLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDS 553

Query: 122 AHALFFQKYWGILGIDISDMCLKVLNQGESVEELNNTLISLIPKCKDPKRMSDFRPITLC 181
             A FF + W ++         +    G  ++  N T I+LIPK     ++S FRP++ C
Sbjct: 554 FTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCC 613

Query: 182 NVTYKLI 187
            V YK+I
Sbjct: 614 TVVYKII 620

BLAST of Lcy06g012580 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 28/81 (34.57%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 190 LANRLKKVLNSIIAQNQSAFVSERLIITDNVILDFESIHAPDNRKMGKKGFLAMKLDMGK 249
           +  RLK ++ ++I   Q++F+  R + TDN++   E++H+   RK G KG++ +KLD+ K
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGR-VSTDNIVFVQEAVHSM-RRKKGVKGWMLLKLDLEK 60

Query: 250 AFDRVEWAYIDKIMSHMGFSD 271
           A+DR+ W Y++  +   GF +
Sbjct: 61  AYDRIRWDYLEDTLISAGFPE 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P113692.1e-2129.36LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
P143812.3e-2030.23Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV... [more]
O003706.3e-1826.97LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
P085483.1e-1726.02LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
A0A7N2L6Z91.6e-6950.00Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... [more]
A0A7N2LT952.6e-6748.51Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... [more]
A0A2N9GIC43.8e-6649.07Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9G3I83.8e-6646.67Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2K3NDN78.5e-6647.58Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024447 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_023878301.12.1e-7453.33uncharacterized protein LOC111990748 [Quercus suber][more]
XP_023881891.18.1e-7151.67uncharacterized protein LOC111994244 [Quercus suber][more]
XP_023908235.18.4e-6848.52uncharacterized protein LOC112019924 [Quercus suber][more]
XP_006491472.11.4e-6747.97uncharacterized protein LOC102626455 [Citrus sinensis][more]
XP_030923330.19.3e-6748.51uncharacterized protein LOC115950239 [Quercus lobata][more]
Match NameE-valueIdentityDescription
AT1G43760.13.7e-1326.20DNAse I-like superfamily protein [more]
AT4G20520.11.1e-0934.57RNA binding;RNA-directed DNA polymerases [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 167..269
e-value: 6.8E-16
score: 58.5
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 12..270
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 12..270
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 156..263
e-value: 7.86201E-30
score: 110.073

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g012580.1Lcy06g012580.1mRNA