Lcy06g012030 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g012030
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr06: 14879098 .. 14879472 (-)
RNA-Seq Expression	Lcy06g012030
Synteny	Lcy06g012030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCGATTGGGTTTTGCACAGGCATGGGTGGATCTCATTATTCGATGTGTTAGTTCAGTCACTTTCTCATTTAATCTGAATGGTGAGAAGCTTGGGCATGTGGTTCCAACGAGAGGCCTTCGGCAGGGGGATCTCTTGTCGTCTTACATTTTCTTACTCTGTGCAGAAGGGCTTTCTAGTTTGCTGCAAGGTGCTGAACGACAGAGTCTTATATCGAGATTTCGTTTAGCTCGTACATACCCGTCAGTGTCGCATTTCTTTTTTACTGATGACAACCTTTTGTTTTTTCGAGCGAAGGCATCTGAGGGCACGGTCATCCGAGAGTTGTTGTTGCTTTATGAGAAAGCCTCTGGACAAACCATTAATTATTAG

mRNA sequence

ATGCGTCGATTGGGTTTTGCACAGGCATGGGTGGATCTCATTATTCGATGTGTTAGTTCAGTCACTTTCTCATTTAATCTGAATGGTGAGAAGCTTGGGCATGTGGTTCCAACGAGAGGCCTTCGGCAGGGGGATCTCTTGTCGTCTTACATTTTCTTACTCTGTGCAGAAGGGCTTTCTAGTTTGCTGCAAGGTGCTGAACGACAGAGTCTTATATCGAGATTTCGTTTAGCTCGTACATACCCGTCAGTGTCGCATTTCTTTTTTACTGATGACAACCTTTTGTTTTTTCGAGCGAAGGCATCTGAGGGCACGGTCATCCGAGAGTTGTTGTTGCTTTATGAGAAAGCCTCTGGACAAACCATTAATTATTAG

Coding sequence (CDS)

ATGCGTCGATTGGGTTTTGCACAGGCATGGGTGGATCTCATTATTCGATGTGTTAGTTCAGTCACTTTCTCATTTAATCTGAATGGTGAGAAGCTTGGGCATGTGGTTCCAACGAGAGGCCTTCGGCAGGGGGATCTCTTGTCGTCTTACATTTTCTTACTCTGTGCAGAAGGGCTTTCTAGTTTGCTGCAAGGTGCTGAACGACAGAGTCTTATATCGAGATTTCGTTTAGCTCGTACATACCCGTCAGTGTCGCATTTCTTTTTTACTGATGACAACCTTTTGTTTTTTCGAGCGAAGGCATCTGAGGGCACGGTCATCCGAGAGTTGTTGTTGCTTTATGAGAAAGCCTCTGGACAAACCATTAATTATTAG

Protein sequence

MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLSSLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQTINY

Homology

[Close]

BLAST of Lcy06g012030 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 25 FNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLSSLLQGAERQSLISRFRLARTYPSV 84
          F +NG   G V P+RGLRQGD LS Y+F+LC E LS L + A+ Q  +   R++   P +
Sbjct: 12 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 71

Query: 85 SHFFFTDD 93
          +H  F DD
Sbjct: 72 NHLLFADD 79

[Close]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL
Match: A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.0e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           MR++GF + W+ LI+RC+SSV++S  +NGE  G++VPTRGLRQGD LS Y+FLLCAEGLS
Sbjct: 472 MRKMGFNEGWISLIMRCISSVSYSVIINGEYFGNIVPTRGLRQGDPLSPYLFLLCAEGLS 531

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
           +LL  A R  L++   L R  P ++H FF DD+LLF +A   E   ++E+L  YE ASGQ
Sbjct: 532 ALLHDAARNQLLNGISLCRGCPRITHLFFADDSLLFCKANREECEKLKEILEKYEAASGQ 591

Query: 121 TIN 124
            +N
Sbjct: 592 KVN 594

[Close]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL
Match: A0A2N9I509 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46981 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 3    RLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLSSL 62
            +LGFA  WV L++ CV+S ++S  +NGE  G+V+P+RGLRQGD LS Y+FL+CAEGLS+L
Sbjct: 1189 KLGFADRWVHLVMECVTSPSYSVMVNGEPKGYVLPSRGLRQGDPLSPYLFLICAEGLSAL 1248

Query: 63   LQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQTI 122
            ++ AER SLI    + R  P +SH FF DD+++F RA  S+  VI+ +L LYEKASGQ +
Sbjct: 1249 MRKAERDSLIKGISICRAGPRISHLFFADDSIIFCRANVSDCLVIQNILGLYEKASGQMV 1308

Query: 123  N 124
            N
Sbjct: 1309 N 1309

[Close]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL
Match: A0A6P6U6V4 (uncharacterized protein LOC113708183 OS=Coffea arabica OX=13443 GN=LOC113708183 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-30
Identity = 63/123 (51.22%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           M+R+GF   W+  I+ C++SV++S N+NGEK G + P RGLRQGD LS Y+FL+CAEG S
Sbjct: 374 MQRMGFCPVWIQWILECITSVSYSVNVNGEKRGFIKPARGLRQGDPLSPYLFLICAEGFS 433

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
           +LL+ A RQ  +SR ++A   PS+SH FF DD+L+F +AK  E   + ++L  Y +ASGQ
Sbjct: 434 ALLRRANRQGRMSRMKIANAAPSLSHLFFADDSLIFCKAKVGEAVQLMQVLEEYGRASGQ 493

Query: 121 TIN 124
            IN
Sbjct: 494 LIN 496

[Close]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL
Match: A0A2N9G3M1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21965 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-30
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           M ++GF   WVDL++ C+S+V++S  LNG   GH++P+RGLRQGD LS Y+FL+CAEG +
Sbjct: 438 MLKMGFDCRWVDLMMECISTVSYSILLNGTPTGHIIPSRGLRQGDPLSPYLFLICAEGFT 497

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
           SL++ AE Q LI    ++R  P  SH FF DD+++F RAK  E   +RE+L LYE ASGQ
Sbjct: 498 SLIRKAENQKLIQGISISRGGPRFSHLFFADDSIIFCRAKIEECRALREILKLYEDASGQ 557

Query: 121 TIN 124
            +N
Sbjct: 558 KLN 560

[Close]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL
Match: A0A2N9IKR1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52423 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.8e-30
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           M ++GF   WVDL++ C+S+V++S  LNG   GH++P+RGLRQGD LS Y+FL+CAEG +
Sbjct: 799 MLKMGFDCRWVDLMMECISTVSYSILLNGTPTGHIIPSRGLRQGDPLSPYLFLICAEGFT 858

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
           SL++ AE Q LI    ++R  P  SH FF DD+++F RAK  E   +RE+L LYE ASGQ
Sbjct: 859 SLIRKAENQKLIQGISISRGGPRFSHLFFADDSIIFCRAKIEECRALREILKLYEDASGQ 918

Query: 121 TIN 124
            +N
Sbjct: 919 KLN 921

[Close]

BLAST of Lcy06g012030 vs. NCBI nr
Match: XP_019163454.1 (PREDICTED: uncharacterized protein LOC109159798 [Ipomoea nil])

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-32
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 4   LGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLSSLL 63
           LGF Q W++L++ CV++VT++  +NG+  G V+PTRG+RQGD LS Y+F+LCAEGLS LL
Sbjct: 594 LGFTQGWIELLMMCVTTVTYNIQVNGDPAGSVIPTRGIRQGDPLSPYLFILCAEGLSILL 653

Query: 64  QGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQTIN 123
           Q AE +  I   R+AR  PSVSH FF DD+LLFFRA + E   I++ L +Y  ASGQ IN
Sbjct: 654 QQAEARGDIHGIRIARGAPSVSHLFFADDSLLFFRATSEEAQTIKDCLEMYSAASGQVIN 713

Query: 124 Y 125
           Y
Sbjct: 714 Y 714

[Close]

BLAST of Lcy06g012030 vs. NCBI nr
Match: XP_031091035.1 (uncharacterized protein LOC115996030 [Ipomoea triloba])

HSP 1 Score: 144.4 bits (363), Expect = 6.4e-31
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           +  LGFA+ W++LI+ CV++V++ F +NG   G VVPTRGLRQGD LS Y+F++CAEGLS
Sbjct: 567 LEALGFAEGWINLIMLCVTTVSYDFLVNGTLSGQVVPTRGLRQGDPLSPYLFIICAEGLS 626

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
            LLQ A+    I   R+AR  PSVSH FF DD+LLFFR+ A E   I+  L LYE  SGQ
Sbjct: 627 LLLQKAQADGSIRGCRVARGAPSVSHLFFADDSLLFFRSNAQEAGAIKHCLSLYESMSGQ 686

Query: 121 TINY 125
            +NY
Sbjct: 687 VVNY 690

[Close]

BLAST of Lcy06g012030 vs. NCBI nr
Match: XP_019180182.1 (PREDICTED: uncharacterized protein LOC109175373 [Ipomoea nil])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           M  LGFA+ WV+LI+ CV+SV+++  +NG   G VVP+RGLRQGD LS Y+F++CAEGLS
Sbjct: 573 MIALGFAEGWVNLIMLCVTSVSYNILINGAVGGVVVPSRGLRQGDPLSPYLFIICAEGLS 632

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
            +LQ A+    I   R+AR  P++SH FF DD+LLFF+A A EG  +++ L LYEK SGQ
Sbjct: 633 LMLQQAQSLGTIHGCRVARGAPAISHLFFADDSLLFFKANAQEGGAVKQCLELYEKLSGQ 692

Query: 121 TINY 125
           +INY
Sbjct: 693 SINY 696

[Close]

BLAST of Lcy06g012030 vs. NCBI nr
Match: XP_019151047.1 (PREDICTED: uncharacterized protein LOC109147845 [Ipomoea nil])

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           M  LGF + WVDL+++CV++V++S  +NG +   ++PTRGLRQGD LS Y+F++CAEGLS
Sbjct: 535 MMALGFHRNWVDLVMKCVTTVSYSILVNGSRSDPIIPTRGLRQGDPLSPYLFIICAEGLS 594

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
            +LQ A R+ LI   R+AR  P VSH FF DD+LLFF+AK  E   I+  L  YE  SGQ
Sbjct: 595 LMLQQANREGLIHGCRVARGAPQVSHLFFADDSLLFFKAKEEEANEIKRCLTAYENLSGQ 654

Query: 121 TINY 125
            +NY
Sbjct: 655 VVNY 658

[Close]

BLAST of Lcy06g012030 vs. NCBI nr
Match: XP_019170153.1 (PREDICTED: uncharacterized protein LOC109165716 [Ipomoea nil])

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 1   MRRLGFAQAWVDLIIRCVSSVTFSFNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLS 60
           MR LGFA+ WV+LI+ CV++V+++  +NG   G VVPTRGLRQGD LS Y+F++CAEGLS
Sbjct: 77  MRALGFAERWVNLIMLCVTTVSYNILINGAVGGVVVPTRGLRQGDPLSPYLFIICAEGLS 136

Query: 61  SLLQGAERQSLISRFRLARTYPSVSHFFFTDDNLLFFRAKASEGTVIRELLLLYEKASGQ 120
            +LQ A+    I   R+AR  P++SH FF DD+LLFF+  A EG+ I+  L  YEK SGQ
Sbjct: 137 MMLQQAQSLGAIHGCRVARGAPAISHLFFADDSLLFFKINAQEGSAIKRCLEHYEKLSGQ 196

Query: 121 TINY 125
           +INY
Sbjct: 197 SINY 200

[Close]

BLAST of Lcy06g012030 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-12
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 25 FNLNGEKLGHVVPTRGLRQGDLLSSYIFLLCAEGLSSLLQGAERQSLISRFRLARTYPSV 84
          F +NG   G V P+RGLRQGD LS Y+F+LC E LS L + A+ Q  +   R++   P +
Sbjct: 12 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 71

Query: 85 SHFFFTDD 93
          +H  F DD
Sbjct: 72 NHLLFADD 79

The following BLAST results are available for this feature:

BLAST of Lcy06g012030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92555	1.0e-10	45.59	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy06g012030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2L6Z9	9.0e-31	53.66	Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ...	[more]
A0A2N9I509	1.5e-30	54.55	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46981 PE=3 SV=1	[more]
A0A6P6U6V4	5.8e-30	51.22	uncharacterized protein LOC113708183 OS=Coffea arabica OX=13443 GN=LOC113708183 ...	[more]
A0A2N9G3M1	5.8e-30	52.03	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21965 PE=4 SV=1	[more]
A0A2N9IKR1	5.8e-30	52.03	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]

BLAST of Lcy06g012030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019163454.1	9.9e-32	56.20	PREDICTED: uncharacterized protein LOC109159798 [Ipomoea nil]	[more]
XP_031091035.1	6.4e-31	55.65	uncharacterized protein LOC115996030 [Ipomoea triloba]	[more]
XP_019180182.1	1.4e-30	55.65	PREDICTED: uncharacterized protein LOC109175373 [Ipomoea nil]	[more]
XP_019151047.1	1.9e-30	53.23	PREDICTED: uncharacterized protein LOC109147845 [Ipomoea nil]	[more]
XP_019170153.1	1.9e-30	55.65	PREDICTED: uncharacterized protein LOC109165716 [Ipomoea nil]	[more]

BLAST of Lcy06g012030 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	7.1e-12	45.59	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..107 e-value: 3.9E-10 score: 39.6
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 1..124
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g012030.1	Lcy06g012030.1	mRNA