Lcy06g011850 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g011850
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr06: 14366297 .. 14370128 (+)
RNA-Seq ExpressionLcy06g011850
SyntenyLcy06g011850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAATAAGCCGATTTCTCCTATGGAAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGCAAACCAACGGAAACGAAGTAAGGAGCAATCTGAACAGGACGTCTGTCAGATGATTTCCCAAGGACAGAATTTGATTATGCATGTTGATGCAGCATGTGATTTTGAGAATCGTCGTTGTGGTATTGGTATAGTGCTCCGTAATCGGAATGGTCATTTGAAGTGTGCGAAGCAACAAGGTTTGATTACTTTTACTTCTTCGTTATGTGCTGAAGCGATGGCCATACTTGAAGGTATGAAGATAGCAATCCAAAATGGAGTGCAGCGTTTGACCATCTTTTCAGATTCTTTAGCTTTGATCTCTATTATTATGCGGAAGGAACGGTGTACACTGGAATGTGCTACAATCTTTTGGGACATTGAGAATCTTCGAGGTTCGTTTCAAGAGATCTTTCATGCAAATCGCGAGTTTAATTATTTGGCGGATGCTCTAGCCCGTACAGGGCTGTATGATTCACCACAAATGTGGTTCTCAGACTATCCCGATTGGGTAATACGTTTCGCTCATTGTGAGCAACGTTTATTTGTAACCCCTTGGGGATCTTTATCTTCTTAATATAATCCTTTTTGGTTAAAAAAAAATGACAATTCAATTAATTCTATTAATTGAATCCACATTAATTAAATATCAAATATTTAATTAAATTTACAATTGAATCATATTCAATTTTATCTCCCTCATTTAACATATAGTTTTAATGTGCATCAAAATGTACATTAATATAAACTATAGTATTAATTTGATTAAATCACATTTAACCAAATTAAATTAAATTAATTAATTCCCCAATTAATTAATTCATGAATTAATCAAATATCACATATTTAATTAAATTCATAATTCTCTTTTTAATTAATTTTGAATTGTATCCAAAATTAACTATAAAGTTTAATTCTTTAATTAAACTTTATACTATAATGTATCTCCATACATTATATTAATTTCATTTAATATCAAGACTAAATTATCTCAGAACCCGTTATGAGCTAGCAGGTGGACCTAATGAACCTATAGATCAGAAGCTCCAACGATACGAGATTGATAAGCTAAACTCATTAACCGAGTCAATCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCTCTTCTCACTGTAGAATATTTCTGTGTCCATGGATATCGACCAATGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTAGATCCTTAAGTACCACTGATCCCTCTAATGAACAACCTGTTTAGGGCCCAACCACTAAACAGAAATTCCTCTCAGGCCAGGAGAGGACAACGTGCTTTTATTCAAGCCCCGGAATCAGCCCTTAAGGGAACACACATCTACTTGCTCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTTCTAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGAATGTTGAGTCGGCGAACTGGCCACTCTCACCCATACAAATCTAAGGACAATCCCTCTTGAAAAGGAGTTCATATCAGACTCAGGATTGGGATTGAGTTACCTAGGTCATCCGATTGAAATAGAAACCTAAACTAGTCAACGACGTTACATCTAGTGGTTACTATTTTGCAGTCCGGTCTTATGCAAACTCATTGCATAGAATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATTGGATACAAGGTAGACCGTATCACATAGTGTTACCAGGATAAGGTACCCAACCTTATCCCTATACTATAGACCATTTAGGTTGTTACTTGGACACCGATCCCCGTATGTCACTACATATCAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCAATTATTCAATAACCAAATTACTGAATCACTCAAATAACGCTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAACTCCTACTTGAACTAAAACTCTAGTTTAATGGGATGTACAATAATCTATTCAGCAGTGGGTGTATAAATACATGTATAAAACATATACAATGTACAAATACAATAAACTAGGGCATCACTATACCCATTACATAATGGTATCACTATATCCATTACATTTCTCCCACTTGCCCTAGATTCCATCTTTGTACATAACTCGTAGACCTAGACCTTCTAAATGACTCTCATACCCTTTAGCTGAGAGAGCCTTCATGAATTAATCAACAACATTCCATTTAATTAATCAGCAATACAGTGGTGCTGTGGAAAATTCAAAAGAACCTTGCAGCCAAAGACAATTCACATTAATTAAATGGAATATTGTTGATTAATTCACGAAGGCTCTCTCAGCTAAAGGGTATGAGGGTCATCTAGAAGGTCTAGGTCTACGAGTTATGTACAAAGATGGAATCTAGGGCAAGTGGGAGAAATGAAATGGGTATAGTGATACCATTATGTAATGGGTATAGTGATGCCCTAGTTTATTGTATTTGTACATTGTATATGTTTTATACATGTATTTATACACCCACTGCTGAATAGATTATTGTACATCCCACTAAACTAGAGTTTTAATTCAAGTGGGAGTTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTATATACTTGTTTTAATAAAGTGTTATTAAGTTTCTGCAATAAAATGTTATTGTTAAATATTGCACAATTTAACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTATGTGGGGACATACGGGGATCGATGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGGATAAGACTGGGTACCTTATCTTGGTAACACTATGTGATACGACCCGCTTTGTATTTGATACAGACGTATTGATCAAAAGCGTCCATGTAGTAGACATGCGAGTGGGGGTATCCTATGCGATGAGTTTGCATACGACCGAACCGCGAAATAGTAACCACTAGCCGTAACACCGTTAACTAGTTAGGTTTCTATTTCACAAGGATGACCTAGGCAACTTAGTCTGAATCCTTAGTGGATTATGGACTCGTTCACGAGAGATTGTCCTTTGATTTGTATGGGTGATAGTGGCCAGCACACCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGAAATTCACTCCTTTCCGACTTTTGTGGAAGTAGATGAGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAAAGGGCCCTACCCTCTCACTGGCCCAAGAGGGGTTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGAAGGTAAAGGTAACTCATGGGTAAAACGGTAATTTGACCCAGCTGGAGTTACGAACACTCGTGAAGGACTGACTTGCCGTTATTGGTCGATATCCATGGACACAGAAATATTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTCCTTATTTCCTCCAAGTTGAAGGTAATGGAACTTTCTTTTTCATCATCCTTCCATCTGAAATTTCTCCATTCATTAATCAATTCATCTAATTCCATTGCAGGGTGGTGCTCTTCTTTCGTTGTTCTCTTCTCCAAGGTTGCTGATTTCTTCCGTTGATTCTAGTTCCAAAGTGGCTTTCTTCTTCTGCTGCTTTTCCTTCTTCCAGCACTCCAGTTGA

mRNA sequence

ATGCATAATAAGCCGATTTCTCCTATGGAAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGCAAACCAACGGAAACGAAGTAAGGAGCAATCTGAACAGGACGTCTGTCAGATGATTTCCCAAGGACAGAATTTGATTATGCATGTTGATGCAGCATGTGATTTTGAGAATCGTCGTTGTGGTATTGGTATAGTGCTCCGTAATCGGAATGGTCATTTGAAGTGTGCGAAGCAACAAGGTTTGATTACTTTTACTTCTTCGTTATGTGCTGAAGCGATGGCCATACTTGAAGGTATGAAGATAGCAATCCAAAATGGAGTGCAGCGTTTGACCATCTTTTCAGATTCTTTAGCTTTGATCTCTATTATTATGCGGAAGGAACGGTGTACACTGGAATGTGCTACAATCTTTTGGGACATTGAGAATCTTCGAGGTTCGTTTCAAGAGATCTTTCATGCAAATCGCGAGTTTAATTATTTGGCGGATGCTCTAGCCCGTACAGGGCTGTATGATTCACCACAAATGTGGTTCTCAGACTATCCCGATTGGGGTGGTGCTCTTCTTTCGTTGTTCTCTTCTCCAAGGTTGCTGATTTCTTCCGTTGATTCTAGTTCCAAAGTGGCTTTCTTCTTCTGCTGCTTTTCCTTCTTCCAGCACTCCAGTTGA

Coding sequence (CDS)

ATGCATAATAAGCCGATTTCTCCTATGGAAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGCAAACCAACGGAAACGAAGTAAGGAGCAATCTGAACAGGACGTCTGTCAGATGATTTCCCAAGGACAGAATTTGATTATGCATGTTGATGCAGCATGTGATTTTGAGAATCGTCGTTGTGGTATTGGTATAGTGCTCCGTAATCGGAATGGTCATTTGAAGTGTGCGAAGCAACAAGGTTTGATTACTTTTACTTCTTCGTTATGTGCTGAAGCGATGGCCATACTTGAAGGTATGAAGATAGCAATCCAAAATGGAGTGCAGCGTTTGACCATCTTTTCAGATTCTTTAGCTTTGATCTCTATTATTATGCGGAAGGAACGGTGTACACTGGAATGTGCTACAATCTTTTGGGACATTGAGAATCTTCGAGGTTCGTTTCAAGAGATCTTTCATGCAAATCGCGAGTTTAATTATTTGGCGGATGCTCTAGCCCGTACAGGGCTGTATGATTCACCACAAATGTGGTTCTCAGACTATCCCGATTGGGGTGGTGCTCTTCTTTCGTTGTTCTCTTCTCCAAGGTTGCTGATTTCTTCCGTTGATTCTAGTTCCAAAGTGGCTTTCTTCTTCTGCTGCTTTTCCTTCTTCCAGCACTCCAGTTGA

Protein sequence

MHNKPISPMEIKCEWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHANREFNYLADALARTGLYDSPQMWFSDYPDWGGALLSLFSSPRLLISSVDSSSKVAFFFCCFSFFQHSS
Homology
BLAST of Lcy06g011850 vs. ExPASy TrEMBL
Match: J7G0Q7 (Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 0

Query: 42   QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAIL 101
            Q  S GQ L ++ D A +F++R  G G ++R+  G L  A  +      SSL AE +AI 
Sbjct: 1491 QAPSSGQ-LKVNCDGAANFKDRCFGGGTIIRDEFGSLIVAGGKNFQHPVSSLVAELLAIK 1550

Query: 102  EGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRG--SFQEIFHAN 161
             G+ + ++  ++ + + SD L  I ++  KERC      +  DI+N     +   I+H  
Sbjct: 1551 VGLDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVR 1610

Query: 162  REFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL 203
            RE N  A A+A+     +   +W  D PDW   L+SL    + L
Sbjct: 1611 REGNTAAHAIAKFVARNNGRYVWLEDGPDW---LMSLICHDKTL 1650

BLAST of Lcy06g011850 vs. ExPASy TrEMBL
Match: A0A6D2L9H8 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS44896 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-09
Identity = 54/163 (33.13%), Postives = 78/163 (47.85%), Query Frame = 0

Query: 14   EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRN 73
            EW+   L   K     + ++ +  +D         +   H D A + E+R  G+G + +N
Sbjct: 1072 EWLQAQLEISKPIKPLRSARAEIPRD---------HFRCHTDGAWNGEHRSGGLGWIFQN 1131

Query: 74   RNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKER 133
            RN  L     + L    S L +EA+AI E ++ AI  G  RL + SDS  LIS I  K R
Sbjct: 1132 RNLDLLSQGSKALENVASPLISEALAIREALRHAIDLGFSRLHVASDSQILISAINSKTR 1191

Query: 134  CTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL 175
             + E   I  DI +L   FQ +F  +  R  N LAD+LA+  L
Sbjct: 1192 LS-EVFGILQDISHLSSRFQSVFFVSIPRAANVLADSLAKRSL 1224

BLAST of Lcy06g011850 vs. ExPASy TrEMBL
Match: A0A5C7GQX3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 0

Query: 14  EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLI-MHVDAACDFENRRCGIGIVLR 73
           EW   +L EF+ ++   + +  S++ V + ++  Q +  ++ DAA + +    GIG+V+R
Sbjct: 52  EWAGDFLQEFRKSSAPVQPRLVSDRPVPKWLAPPQGMFKINTDAALNVQGNSAGIGVVIR 111

Query: 74  NRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKE 133
           N  G +  +  +   T  S + AEA+A+LEG+++A   G     + SD+L ++  I R E
Sbjct: 112 NFRGQVMLSSCKNFRTAFSPVIAEALAVLEGLRLAKLGGFFPTVLESDALTVVQDICRNE 171

Query: 134 RCTLECATIFWDIENLRGSFQ--EIFHANREFNYLADALARTGLYDSPQ-MWFSDYP 187
             + +   +  DI      F      H  R  N +A  LA+  L +  + +W  D P
Sbjct: 172 SLSSDVGLVIDDILFFCRDFNFFSFRHVPRLANKVAHGLAKLALSNLGEFVWSGDCP 228

BLAST of Lcy06g011850 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 48/175 (27.43%), Postives = 86/175 (49.14%), Query Frame = 0

Query: 15  WINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRNR 74
           WI+ + +EF+ AN+    +  S Q   +   +G+  I + DA+    + + G+G+++R+ 
Sbjct: 247 WIDNFANEFRLANELNHKEVLSHQPSWKTPKRGEFKI-NCDASFQLRSGKAGVGVIIRDY 306

Query: 75  NGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKERC 134
            G    A+   ++  +S    EA A LEG+ +AI  GV  + I SD+ ++I ++  +   
Sbjct: 307 KGSAIAARSSPVLCCSSVEMLEAQACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTVP 366

Query: 135 TLECATIFWDIENLRGSFQEIFH--ANREFNYLADALARTGL-YDSPQMWFSDYP 187
             E   I      L  S   + +    RE N +A  +A+  L  DSP +WF + P
Sbjct: 367 RTELGAIIHTSLALGASVNLLSYVAVRREANSVAHCIAQHALSLDSPVVWFEEMP 420

BLAST of Lcy06g011850 vs. ExPASy TrEMBL
Match: F4NCG6 (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 0

Query: 16   INGYLSEFKSANQRKRSKEQSEQDVCQM-ISQGQNLI----------MHVDAACDFENRR 75
            I+ ++ +++ AN    S        C++ +  G+NLI          ++ D +   +N +
Sbjct: 1187 IHSFMGKWEKANLEIPSFNTPLPKDCKLPVRSGKNLIWSPPNEDVLKVNFDGS-KLDNGQ 1246

Query: 76   CGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMK--IAIQNGVQRLTIFSDSL 135
               G V+RN NG +  A+ + L  + S L AEAM +LEG+K  I++QN  +++    D++
Sbjct: 1247 AAYGFVIRNSNGEVLMARAKALGVYPSILMAEAMGLLEGIKGAISLQNWSRKIIFEGDNI 1306

Query: 136  ALISIIMRKERCTLECATIFWDIENLRGSFQEI--FHANREFNYLADALARTGLYDSPQM 186
            A+I+ +          A I  D   L G FQE+   H  RE N LAD +A  G +  P++
Sbjct: 1307 AVINAMSPSATGPWTIANIILDAGALLGHFQEVKFQHCYREANRLADFMAHKG-HSHPEV 1366

BLAST of Lcy06g011850 vs. NCBI nr
Match: XP_042969199.1 (uncharacterized protein LOC122301911 [Carya illinoinensis])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-10
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0

Query: 55  DAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGV 114
           DAAC   N + G+G+VLRN NG   + C+K +  ++F   +  EA+A+L G+++ +Q GV
Sbjct: 225 DAACVLCN-QAGVGVVLRNHNGEVVVACSKVEKEVSFAEFI--EAIALLRGLQLCVQWGV 284

Query: 115 QRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQE--IFHANREFNYLADALA 174
            +L + +D L L++ +     C  + A I  DI  L  +FQE  + H NR  N +A  LA
Sbjct: 285 PKLMLKTDCLILVNALNENSECLTDFAFILQDIRRLMAAFQEVKVVHVNRLGNLVAHLLA 344

Query: 175 R-TGLYDSPQMWFSDYPDW 189
           R   L +   MW+   P +
Sbjct: 345 RHVWLINDICMWWDFCPSF 360

BLAST of Lcy06g011850 vs. NCBI nr
Match: KAG6693249.1 (hypothetical protein I3842_10G159900 [Carya illinoinensis])

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-09
Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = 0

Query: 50  LIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQ 109
           L ++VD A   ++   G+G++LR+ NG +  A  +     +S++  EA+A+L G+++ +Q
Sbjct: 585 LKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASKVEREVSSAVFIEAIALLRGLQLCVQ 644

Query: 110 NGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQE--IFHANREFNYLAD 169
            GV ++ + SDSL L++ +     C  E   I  DI  L   F+E  + H +R  N  A 
Sbjct: 645 WGVPKIILESDSLILVNCLNEDSECLTEFDFILQDIRRLMHGFEETRLEHVHRLGNGAAH 704

Query: 170 ALARTGL-YDSPQMWFSDYPDWGGAL 193
            LAR     +   MW+   P +G A+
Sbjct: 705 QLARYAREVEDIVMWWDSCPSFGRAV 730

BLAST of Lcy06g011850 vs. NCBI nr
Match: AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa])

HSP 1 Score: 71.6 bits (174), Expect = 9.6e-09
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 0

Query: 42   QMISQGQNLIMHVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAIL 101
            Q  S GQ L ++ D A +F++R  G G ++R+  G L  A  +      SSL AE +AI 
Sbjct: 1491 QAPSSGQ-LKVNCDGAANFKDRCFGGGTIIRDEFGSLIVAGGKNFQHPVSSLVAELLAIK 1550

Query: 102  EGMKIAIQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRG--SFQEIFHAN 161
             G+ + ++  ++ + + SD L  I ++  KERC      +  DI+N     +   I+H  
Sbjct: 1551 VGLDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVR 1610

Query: 162  REFNYLADALAR-TGLYDSPQMWFSDYPDWGGALLSLFSSPRLL 203
            RE N  A A+A+     +   +W  D PDW   L+SL    + L
Sbjct: 1611 REGNTAAHAIAKFVARNNGRYVWLEDGPDW---LMSLICHDKTL 1650

BLAST of Lcy06g011850 vs. NCBI nr
Match: XP_042954689.1 (uncharacterized protein LOC122291107 [Carya illinoinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = 0

Query: 50  LIMHVDAACDFENRRCGIGIVLRNRNGH--LKCAKQQGLITFTSSLCAEAMAILEGMKIA 109
           L +++D A   E+   GIG+VLR++ G   + C+K +  ++F   +  EA+A+L G+++ 
Sbjct: 190 LKLNIDGATFPEHSIVGIGVVLRDQYGEVVVACSKVEKEVSFVEFI--EAVALLRGLQLC 249

Query: 110 IQNGVQRLTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEI--FHANREFNYL 169
            Q GV ++ + +D L L++ +     C  + A I  DI+ L   FQE+   H NR  N +
Sbjct: 250 AQWGVPKIMLETDCLVLVNALNENSVCLTDFAFILQDIQRLMEGFQEVKLVHVNRLRNLV 309

Query: 170 ADALAR-TGLYDSPQMWFSDY 186
           A  LAR T L D   MW+ DY
Sbjct: 310 AYFLARHTWLIDDICMWW-DY 327

BLAST of Lcy06g011850 vs. NCBI nr
Match: CAA7057660.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 54/163 (33.13%), Postives = 78/163 (47.85%), Query Frame = 0

Query: 14   EWINGYLSEFKSANQRKRSKEQSEQDVCQMISQGQNLIMHVDAACDFENRRCGIGIVLRN 73
            EW+   L   K     + ++ +  +D         +   H D A + E+R  G+G + +N
Sbjct: 1072 EWLQAQLEISKPIKPLRSARAEIPRD---------HFRCHTDGAWNGEHRSGGLGWIFQN 1131

Query: 74   RNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQRLTIFSDSLALISIIMRKER 133
            RN  L     + L    S L +EA+AI E ++ AI  G  RL + SDS  LIS I  K R
Sbjct: 1132 RNLDLLSQGSKALENVASPLISEALAIREALRHAIDLGFSRLHVASDSQILISAINSKTR 1191

Query: 134  CTLECATIFWDIENLRGSFQEIFHAN--REFNYLADALARTGL 175
             + E   I  DI +L   FQ +F  +  R  N LAD+LA+  L
Sbjct: 1192 LS-EVFGILQDISHLSSRFQSVFFVSIPRAANVLADSLAKRSL 1224

BLAST of Lcy06g011850 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 51/146 (34.93%), Postives = 69/146 (47.26%), Query Frame = 0

Query: 53  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMK---IAIQ 112
           + DA  + +N RCGIG VLRN  G +K    + L    S L AE    LE M+   +++ 
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE----LEAMRWAVLSLS 490

Query: 113 NGVQRLTIF-SDSLALISIIMRKERCTLECATIFWDIENLRGSFQEI--FHANREFNYLA 172
                  IF SDS  LI I+   E       TI  D++ L   F E+      RE N LA
Sbjct: 491 RFQYNYVIFESDSQVLIEILNNDEIWPSLKPTI-QDLQRLLSQFTEVKFVFIPREGNTLA 550

Query: 173 DALARTGL----YDSPQMWFSDYPDW 189
           + +AR  L    YD P++ +S  P W
Sbjct: 551 ERVARESLSFLNYD-PKL-YSIVPSW 569

BLAST of Lcy06g011850 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-05
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = 0

Query: 53  HVDAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGV 112
           + DA    EN RCGIG +LRN +G +     + L    + L AE  A+   +    +   
Sbjct: 148 NTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRFNY 207

Query: 113 QRLTIFSDSLALISIIMRKERC-TLECATIFWDIENLRGSFQEI--FHANREFNYLADAL 172
           +R+   SD+ AL++++   +   TL+ A    DI+ L   F+E+      R  N +AD +
Sbjct: 208 KRIIFESDAQALVNLLNSDDFWPTLQPA--LEDIQQLLHHFEEVKFEFTPRGGNKVADRI 267

Query: 173 ARTGL----YDSPQMWFSDYPDW 189
           AR  +    YD P++ FS  P W
Sbjct: 268 ARESISFSNYD-PKL-FSIVPQW 286

BLAST of Lcy06g011850 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.3e-05
Identity = 39/122 (31.97%), Postives = 58/122 (47.54%), Query Frame = 0

Query: 55  DAACDFENRRCGIGIVLRNRNGHLKCAKQQGLITFTSSLCAEAMAILEGMKIAIQNGVQR 114
           DAA   E +  G G V+RN         Q         L AEA+A+   ++ A   G+ +
Sbjct: 36  DAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLALQYAQSIGITK 95

Query: 115 LTIFSDSLALISIIMRKERCTLECATIFWDIENLRGSFQEIFHA--NREFNYLADALART 174
           L++ SDS  LI+ I  +   T E   I +DI NL   F ++  +   R  N +AD LA++
Sbjct: 96  LSMASDSQQLITAITSESPST-EFYGIIFDILNLSLGFADVSFSFVPRSENRVADELAKS 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
J7G0Q74.6e-0931.10Non-ltr retroelement reverse transcriptase OS=Rosa rugosa OX=74645 PE=4 SV=1[more]
A0A6D2L9H86.1e-0933.13Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS44896 ... [more]
A0A5C7GQX31.8e-0827.12RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 ... [more]
A0A5C7H0P03.0e-0827.43Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1[more]
F4NCG61.1e-0729.41Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris... [more]
Match NameE-valueIdentityDescription
XP_042969199.11.7e-1035.25uncharacterized protein LOC122301911 [Carya illinoinensis][more]
KAG6693249.17.3e-0930.82hypothetical protein I3842_10G159900 [Carya illinoinensis][more]
AFP55557.19.6e-0931.10non-ltr retroelement reverse transcriptase [Rosa rugosa][more]
XP_042954689.11.3e-0834.75uncharacterized protein LOC122291107 [Carya illinoinensis][more]
CAA7057660.11.3e-0833.13unnamed protein product [Microthlaspi erraticum][more]
Match NameE-valueIdentityDescription
AT4G29090.12.8e-0634.93Ribonuclease H-like superfamily protein [more]
AT2G34320.14.0e-0530.77Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G09490.15.3e-0531.97Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 48..175
e-value: 4.5E-18
score: 67.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 54..172
e-value: 1.0E-21
score: 77.0
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 52..184
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 54..171
e-value: 8.07113E-24
score: 90.066
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 50..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g011850.1Lcy06g011850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity