Lcy06g011410 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g011410
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase II subunit 4
LocationChr06: 13300719 .. 13303154 (+)
RNA-Seq ExpressionLcy06g011410
SyntenyLcy06g011410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGTGAGGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGGTAATCTATATATAAATCTCTGAATTTCCCCTTCTGTGGATGGTTATTTTGCTTAGTCGTGAGAGGAGAAAGACAGTAAACTTCCTTGCTATACTCTGAATTTTCCTCTCCATGTGATTATGTCTTGTAGCCATCTACTTTGGGTCGTATGTCGTAGTATCTTATAACTTTCTCAGATATTGTTAGATAAGAAATAGTCATTAGATGGAGTGTCTTATAGGTGGCTGGACGTGCACGTGTACAAAAAGAAGTTTCTTTTGTATACACCTTCTGATTGTTTTTATGATATCATTTTTTGAGTTGGCTCATTTACTACATTGAAGCACTACTTCCTTAATATATTGTTCAAGTCTCAAACAGCTAAATGCCTTGAGTTTTCTGATGTTTTGGATTAATATTATATGGTTCTAAGGTTTTCTATTTTAGATGAAGATATGTGATCTATGCAAAATCTAATTTCAGTCTGTAATCATTTTGTCAAAAAGATACTTAACTATTGTAAGCTTTTCCATTTTTGTATGAATCTATGATAATGTTAGGCTATATTATAGCGAAATCTTTAGTTCACATGAATAAGTAAGTATTCAAAATTTAAGTTCTTGCCACCCAAATCTTTTTGGTGTATACTCTATTCTTTTTCTCACTTTGTTCTTAAGAGAAAACATCAAAGGTGACCACAGACATTTATTTCCTTTGGCTGCTTGCAGAGTTCTTAAAGGCCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAGTGAGTTTTATGTTTATTCTTGATTGATTCATAAGTTAATTTAGAGTTTGTTTTGCTTGTTGAAATAGCTAAAATATATAGCCAAAGTTATGATATTCATTATGACATGTCATATGATGAGATTTTTAATTATGGTATTCTTTCTGTAGAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGCTTCAGCCGTTATAAAAATCCTGATGCTGTTAGACAAGTACGAGAGTATCCTTTAAACTGATGTCTTCTTTTACGGAATGGTGGCAAAGATGGGTTGTGCATATCTACCATATGCTATGACTGGCTCCATTTTGAACTAGTACTTTAGAACTACCATTTTCTCGCTAGCCCATAACTCTTTGGTTAGTTATTGTTTGGAAAGTAGCTAAAGTTCATTACATCTCGACAGCCATTCTAGGTTTTTCATATGGATATAGGCTTTCCTAGGTATCCATATGCAAAAGATCGTCTATTTTGATATTTAATTAATGGTGGGAAACACAATTTACTTTTATCACCTCAGATATGAACGGGAAGTTTGGTTTCATTGTATAGAATTGCATAAACTAGCTGTGTAATTAAATTTTTTTAAGAGGTTGAATCTTAACCGCCATACAGAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGGTATGCACTAGACACTTTGGTTTCATCAATTTACATTTGTATCTTGTATGCAGTAAAAGGAAAGATTTAATTCATCATTCTTGAAATCTGCAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGGTATCTTTTGCCACACTTTTTTATGCCTAAATCAGATCAGCAAATATCGGTAGTTTTTCTGTTGCTTGTTACGGACAATATATTTATTGGTATTTTGCTAATCATAACTTATAAGTATGTACAAACTTTAATAAAGTTTACTGATATATTTATCTGTCTAAAACCATCATGGGTTGGCCCTAATGATCAATAAGGGCCATAGAAAAAATAAAGGGGTTAGAGGGAATGGGTTCAATCCATGGTGGTCATCTGCCTAGGATATTTAATATCCTACGAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAGGTGATCTTTCTAACATTGAACATGTGTCGAATTTTAAAATACTGCCAAAAATTTTAAAACTTATGTAATTTGAAATTTTTAGTTTTTCCATTTCTGAAATTTGAGAGAATTCAAAAGCGTTTTCGAAGACAAAATGTTTATCGGTTGAAGCGAGATTACTTATGAATGCTTTTCTTGGGTTCAGACTAAAGGGAGAGCGCATGATGATGAAGCAATCGAGAAGATGTTGAATGACCTCTCATTAATCAAAAAGTTTGAGTAGCTACTTTCTAAATCTATGTTAAATATGTTTAATCCATTTCCTATCATTTTCTCAGTTAAATGGAGAATTGTACCCTTCTATCATAATATTATAATTTGATGGGCAAGTTTGTAACTTGGATCCTTAACAAATCTCCAACTTATATCCTAGCCTGTATATTATTATTATTTTTGTTTTGGCTGCCA

mRNA sequence

ATGTCTGGTGAGGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAGGCCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGCTTCAGCCGTTATAAAAATCCTGATGCTGTTAGACAAGTACGAGAAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGGTATCTTTTGCCACACTTTTTTATGCCTAAATCAGATCAGCAAATATCGGTAGTTTTTCTGTTGCTTGTTACGGACAATATATTTATTGGTATTTTGCTAATCATAACTTATAAGTATGTACAAACTTTAATAAAGTTTACTGATATATTTATCTGTCTAAAACCATCATGGGTTGGCCCTAATGATCAATAAGGGCCATAGAAAAAATAAAGGGGTTAGAGGGAATGGGTTCAATCCATGGTGGTCATCTGCCTAGGATATTTAATATCCTACGAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAGGTGATCTTTCTAACATTGAACATGTGTCGAATTTTAAAATACTGCCAAAAATTTTAAAACTTATGTAATTTGAAATTTTTAGTTTTTCCATTTCTGAAATTTGAGAGAATTCAAAAGCGTTTTCGAAGACAAAATGTTTATCGGTTGAAGCGAGATTACTTATGAATGCTTTTCTTGGGTTCAGACTAAAGGGAGAGCGCATGATGATGAAGCAATCGAGAAGATGTTGAATGACCTCTCATTAATCAAAAAGTTTGAGTAGCTACTTTCTAAATCTATGTTAAATATGTTTAATCCATTTCCTATCATTTTCTCAGTTAAATGGAGAATTGTACCCTTCTATCATAATATTATAATTTGATGGGCAAGTTTGTAACTTGGATCCTTAACAAATCTCCAACTTATATCCTAGCCTGTATATTATTATTATTTTTGTTTTGGCTGCCA

Coding sequence (CDS)

ATGTCTGGTGAGGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAGGCCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGCTTCAGCCGTTATAAAAATCCTGATGCTGTTAGACAAGTACGAGAAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGGTATCTTTTGCCACACTTTTTTATGCCTAA

Protein sequence

MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKVSFATLFYA
Homology
[Close]
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.8e-19
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 0 

Query: 2   SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQY 61
           +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKVSF 117
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ A++PSL+  F
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRF 122

[Close]
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 9.8e-19
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 0 

Query: 2   SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQY 61
           +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKVSF 117
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ A++PSL+  F
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRF 122

[Close]
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-16
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = 0 

Query: 4   EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK----------YEQ---LQQMSEDPMNQ 63
           +EEE+   LK   +   AK L+N EV+++LEH+          + Q   L  +  + +N 
Sbjct: 12  QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71

Query: 64  VSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 114
           + + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE+  L NLCPE  +EA +++P
Sbjct: 72  IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131

[Close]
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match: Q9VEA5 (DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 GN=Rpb4 PE=2 SV=5)

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-15
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 0 

Query: 6   EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRF 65
           +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  S D   + S+VF K+  Y   F
Sbjct: 11  DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 70

Query: 66  SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKVSF 117
            ++KN + +   R +L + +L +FEL  LGNLCPE  EEA A++PSL+  F
Sbjct: 71  RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRF 119

[Close]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match: A0A6J1JHK7 (DNA-directed RNA polymerase II subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111487075 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match: A0A6J1GS12 (DNA-directed RNA polymerase II subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111456918 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match: A0A6J1BWW4 (DNA-directed RNA polymerase II subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006069 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match: A0A251S6L0 (Putative DNA-directed RNA polymerase II subunit rpb4 OS=Helianthus annuus OX=4232 GN=RPB4 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 53  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 112

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K
Sbjct: 113 YVKRFSRYKNPDAVRQVRELLSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 165

[Close]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match: A0A059AKJ3 (RPOL4c domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00318 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.7e-54
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113

[Close]
BLAST of Lcy06g011410 vs. NCBI nr
Match: XP_022133507.1 (DNA-directed RNA polymerase II subunit 4 [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. NCBI nr
Match: XP_022954766.1 (DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954778.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022990067.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990068.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990070.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_023536652.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. NCBI nr
Match: XP_022011171.1 (DNA-directed RNA polymerase II subunit 4 [Helianthus annuus] >KAF5763548.1 putative DNA-directed RNA polymerase [Helianthus annuus])

HSP 1 Score: 220.3 bits (560), Expect = 9.0e-54
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K
Sbjct: 61  YVKRFSRYKNPDAVRQVRELLSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113

[Close]
BLAST of Lcy06g011410 vs. NCBI nr
Match: XP_010027764.1 (DNA-directed RNA polymerase II subunit 4 [Eucalyptus grandis] >XP_010027765.1 DNA-directed RNA polymerase II subunit 4 [Eucalyptus grandis] >KCW54358.1 hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis] >KCW54359.1 hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113

[Close]
BLAST of Lcy06g011410 vs. NCBI nr
Match: XP_030924038.1 (DNA-directed RNA polymerase II subunit 4 [Quercus lobata] >KAB1210402.1 DNA-directed RNA polymerase II subunit 4 [Morella rubra] >KAF3942865.1 hypothetical protein CMV_030520 [Castanea mollissima])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113

[Close]
BLAST of Lcy06g011410 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-56
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPSLK
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

[Close]
BLAST of Lcy06g011410 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 21  AKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
           A+C+M+CE   IL+    QL  +SEDP  ++   ++++L YV+    Y NP +VR+V E 
Sbjct: 89  AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148

Query: 81  LSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 114
           L  Y +++ E+CV+ N   E+V+E +A +PSLK
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLK 181

The following BLAST results are available for this feature:
BLAST of Lcy06g011410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O488905.0e-5595.58DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB... [more]
O155149.8e-1942.61DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE... [more]
Q9D7M89.8e-1942.61DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P... [more]
Q54S045.9e-1639.02DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689... [more]
Q9VEA55.0e-1539.64DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 G... [more]
BLAST of Lcy06g011410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JHK71.5e-54100.00DNA-directed RNA polymerase II subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1GS121.5e-54100.00DNA-directed RNA polymerase II subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1BWW41.5e-54100.00DNA-directed RNA polymerase II subunit 4 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A251S6L04.4e-5498.23Putative DNA-directed RNA polymerase II subunit rpb4 OS=Helianthus annuus OX=423... [more]
A0A059AKJ35.7e-5498.23RPOL4c domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I0031... [more]
BLAST of Lcy06g011410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133507.13.1e-54100.00DNA-directed RNA polymerase II subunit 4 [Momordica charantia][more]
XP_022954766.13.1e-54100.00DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DN... [more]
XP_022011171.19.0e-5498.23DNA-directed RNA polymerase II subunit 4 [Helianthus annuus] >KAF5763548.1 putat... [more]
XP_010027764.11.2e-5398.23DNA-directed RNA polymerase II subunit 4 [Eucalyptus grandis] >XP_010027765.1 DN... [more]
XP_030924038.11.2e-5398.23DNA-directed RNA polymerase II subunit 4 [Quercus lobata] >KAB1210402.1 DNA-dire... [more]
BLAST of Lcy06g011410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09920.13.5e-5695.58RNA polymerase II, Rpb4, core protein [more]
AT4G15950.14.4e-1439.78RNA polymerase II, Rpb4, core protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 16..122
e-value: 6.8E-38
score: 141.9
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 2..118
e-value: 4.0E-46
score: 158.1
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 23..114
e-value: 6.2E-20
score: 71.8
NoneNo IPR availablePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 1..116
NoneNo IPR availablePANTHERPTHR21297:SF3DNA-DIRECTED RNA POLYMERASE II SUBUNIT 4-LIKEcoord: 1..116
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g011410.1Lcy06g011410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031990 mRNA export from nucleus in response to heat stress
biological_process GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process GO:0045948 positive regulation of translational initiation
biological_process GO:0034402 recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0000932 P-body
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0030880 RNA polymerase complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0031369 translation initiation factor binding