Lcy06g011330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g011330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-directed RNA polymerase II subunit 4
Location	Chr06: 13222400 .. 13224516 (-)
RNA-Seq Expression	Lcy06g011330
Synteny	Lcy06g011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGTGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGGTAACAATCTATATATAAATCTCTGAATTTCCCCTTCTGTGGATGGCTATTTTGCTTAGTCGTGAGAGGAGAAAGACAGTATACTTTCTTGCTATACTCTGAATTTTCCTCTCCATGTGATTATGTCTTGTAGCCATCTACTTTGGGTCGTATGTCGTAGTATCTTATAACTTTCTCAAATATTGTTAGATAAGAAATAGTCATTAGATGGAGTGTCTTATAGGTGGCTGGACGTGCACGTGTACAAAAAGAAGTTTCTTTTGTATACACCTTCTGATTGTTTTTATGATATCATTTTTTGAGTTGGCTCATTTACTACATTGAAGCACTACTTCCTTAATATATTGTTCAAGTCTCAAACAGCTAAATGCCTTGAGTTTTCTGATGTTTTGGATTAATATTATATGGTTCTAAGGTTTTCTATTTTAGATGAAGATATGTGATCTATGCAAAATCTAATTTCAGTCTGTAATCATATTGTCAAAAAGATACTTAACTATTGTAAGCTTTTCCATTTTTGTATGAATCTATGATAATGTTAGGCTATATTATAGCGAAATCTTTAGTTCACATGAATAAGTAAGTATTCAAAATTTAAGTTCTTGCCACCCAAATTTGGTGTATACTCTGTTCTTTTCCATTCTCTTGTATTTATTTCTCACTTTGTTCTTAAGAGAAAACATCAAAGGTGACAACAGACATTTATTTCCTTTGGCTGCTTGCAGAGTTCTTAAAGGTCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAGTGAGTTTTATGTTTATTCTTGATTGATTCATAAGTTAATTTAGAGTTTGTTTTGCTGGTTGAAATAGCTAAAATATATAGCCAAAGTTATGATATTCATTATGACATGTCATATGATGAGATTTTTAATTATGGTATTCTTTCTGTAGAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGTTTCAGCCGCTATAAAAATCCTGACGCTGTTAGACAAGTACGAGAGTATCCCTTAAACTGACGTCTTCTTTTACGGAATGGTGGCAAAGATGGGTTGTGCATATCTACCATATGCTATGACTGGCTCCATTTTGAACTAGTACTTTAGAACTACCATTTTCTCGCTAGCCCATAACTCTTTGGTTAGTTATTGTTTGGAAAGTGGCTAAAGTTCATTACATCTCGACAGCCATTCTATTTTATAGGTTTTTCATATGGATATAGGCTTTCCTAGGTATCCATATGCAAAAGATCGTCTATTTTGATATTTAATTCATGGTGGGAAATAGAATTTACTTTTATCACCTCAGATATGAACGGGAAGTTTGTGTTCATTGTATAGAATTGCATAAACTAGCAGTGTAATTAAACTTTTTTAAGAGGTTGAATCTTAACCGCCATACAGAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGGTATGCACTAGACACTTTGGTTTCATCAATTTACATTTGTATCTTGTATGCAGTAAAAGGAAAGATTTAATTCATCATTCTTGAAATCTGCAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGGTATCTTTTGCCACATTTTTTTATGCCTAAATCAGATCAGCAAATATCGGTAGTTTTTCTGTTGCTTGTTACGGACAATATATTTATTGGTATTTTGCTAATCATAACTCATAAGTAGGTACAAACTTTTAGAAAGTTTACTGATATATTTATCTTTCTAACCTTGAACATGTGTCGAATTTTAAAATATTGCCAAAAAATTTTAAAACTTATGTAATTTGAAATTTTTAGTTTTCCCATTTCTGAAATTTGAGAGAATTCAAAAGCGTTTTCGAAGACAAAATGTTTATCGGTTGAAGTGCGATTACTTATGAATGCTTTTCTTGGGTTCAGATTAAAGGGAGGGCGCATGATGATGAAGCAATCAAGAAGATGTTGAATGACCTCTCGTTAATCAAAAAGTTTGAGTAG

mRNA sequence

ATGTCTGGTGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAGGTCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGTTTCAGCCGCTATAAAAATCCTGACGCTGTTAGACAAGTACGAGAAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGATTAAAGGGAGGGCGCATGATGATGAAGCAATCAAGAAGATGTTGAATGACCTCTCGTTAATCAAAAAGTTTGAGTAG

Coding sequence (CDS)

ATGTCTGGTGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAGGTCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGTTTCAGCCGCTATAAAAATCCTGACGCTGTTAGACAAGTACGAGAAATTCTAAGCAGATATCAGTTGGCCGAGTTTGAGCTCTGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTTTGAAGATTAAAGGGAGGGCGCATGATGATGAAGCAATCAAGAAGATGTTGAATGACCTCTCGTTAATCAAAAAGTTTGAGTAG

Protein sequence

MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHDDEAIKKMLNDLSLIKKFE

Homology

[Close]

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 128/138 (92.75%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPSLK KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138

[Close]

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-20
Identity = 54/137 (39.42%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 2   SGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQY 61
           +G+ EE+A++L    EF   + L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHDD 121
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ A++PSL  +GR  +D
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGR-FED 129

Query: 122 EAIKKMLNDLSLIKKFE 139
           E ++++L+D+   + F+
Sbjct: 130 EELQQILDDIQTKRSFQ 141

[Close]

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-20
Identity = 54/137 (39.42%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 2   SGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQY 61
           +G+ EE+A++L    EF   + L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHDD 121
             RFSR+KN + +  VR +L + +L +FEL  L NLCPET EE+ A++PSL  +GR  +D
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSL--EGR-FED 129

Query: 122 EAIKKMLNDLSLIKKFE 139
           E ++++L+D+   + F+
Sbjct: 130 EELQQILDDIQTKRSFQ 141

[Close]

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-18
Identity = 55/147 (37.41%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 4   EEEENAAELKIGDEFLKVKCLMNCEVSLILEHK----------YEQ---LQQMSEDPMNQ 63
           +EEE+   LK   +    K L+N EV+++LEH+          + Q   L  +  + +N 
Sbjct: 12  QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71

Query: 64  VSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVP 123
           + + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE+  L NLCPE  +EA +++P
Sbjct: 72  IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131

Query: 124 SLKIKGRAHDDEAIKKMLNDLSLIKKF 138
           SLK   +  DDE ++ +L++LS ++KF
Sbjct: 132 SLK---KMEDDE-LQAILDELSNLRKF 154

[Close]

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot
Match: Q9VEA5 (DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 GN=Rpb4 PE=2 SV=5)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-16
Identity = 48/126 (38.10%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 6   EENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRF 65
           +E+AA+L+   EF   + L+  EV ++L+H+  + Q  S D   + S+VF K+  Y   F
Sbjct: 11  DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSF 70

Query: 66  SRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHDDEAIK 125
            ++KN + +   R +L + +L +FEL  LGNLCPE  EEA A++PSL  +GR  +DE ++
Sbjct: 71  RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSL--EGR-FEDEELR 130

Query: 126 KMLNDL 132
           ++L+D+
Sbjct: 131 QILDDI 131

[Close]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL
Match: A0A6J1BWW4 (DNA-directed RNA polymerase II subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006069 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 135/138 (97.83%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL
Match: A0A6J1JHK7 (DNA-directed RNA polymerase II subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111487075 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-67
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKAKGRVHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL
Match: A0A6J1GS12 (DNA-directed RNA polymerase II subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111456918 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-67
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKAKGRVHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL
Match: A0A6A1VC16 (DNA-directed RNA polymerase II subunit 4 OS=Morella rubra OX=262757 GN=CJ030_MR6G025439 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.6e-67
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEV+LILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL
Match: A0A2N9G2U2 (RPOL4c domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21532 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.6e-67
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEV+LILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. NCBI nr
Match: XP_022133507.1 (DNA-directed RNA polymerase II subunit 4 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-67
Identity = 135/138 (97.83%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. NCBI nr
Match: XP_022954766.1 (DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954778.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022990067.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990068.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_022990070.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima] >XP_023536652.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK KGR HD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKAKGRVHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. NCBI nr
Match: XP_030924038.1 (DNA-directed RNA polymerase II subunit 4 [Quercus lobata] >KAB1210402.1 DNA-directed RNA polymerase II subunit 4 [Morella rubra] >KAF3942865.1 hypothetical protein CMV_030520 [Castanea mollissima])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEV+LILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. NCBI nr
Match: KAF3440471.1 (hypothetical protein FNV43_RR18755 [Rhamnella rubrinervis])

HSP 1 Score: 262.7 bits (670), Expect = 1.8e-66
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIG+EFLK KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGEEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138

[Close]

BLAST of Lcy06g011330 vs. NCBI nr
Match: KAG8649808.1 (hypothetical protein MANES_08G141900v8 [Manihot esculenta])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEV+LILEHKYEQLQQMS+DPMNQVSQVFEKSLQ
Sbjct: 45  MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 104

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K KGRAHD
Sbjct: 105 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 164

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSLIKKFE
Sbjct: 165 DEAIEKMLNDLSLIKKFE 182

[Close]

BLAST of Lcy06g011330 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 128/138 (92.75%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MSGEEEENAAELKIGDEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLK KCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHD 120
           YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPSLK KGRAHD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIKKMLNDLSLIKKFE 139
           DEAI+KMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138

[Close]

BLAST of Lcy06g011330 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-15
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 22  KCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREIL 81
           +C+M+CE   IL+    QL  +SEDP  ++   ++++L YV+    Y NP +VR+V E L
Sbjct: 90  ECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPL 149

Query: 82  SRYQLAEFELCVLGNLCPETVEEAIAMVPSLKIKGRAHDDEAIKKMLNDLSLIKKFE 139
             Y +++ E+CV+ N   E+V+E +A +PSLK K +   ++ ++  L +LS +KK E
Sbjct: 150 KTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKKSE 205

The following BLAST results are available for this feature:

BLAST of Lcy06g011330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48890	1.7e-67	92.75	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
O15514	1.5e-20	39.42	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
Q9D7M8	1.5e-20	39.42	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]
Q54S04	7.2e-18	37.41	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]
Q9VEA5	3.0e-16	38.10	DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 G...	[more]

BLAST of Lcy06g011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWW4	1.7e-67	97.83	DNA-directed RNA polymerase II subunit 4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JHK7	5.1e-67	97.10	DNA-directed RNA polymerase II subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1GS12	5.1e-67	97.10	DNA-directed RNA polymerase II subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6A1VC16	6.6e-67	96.38	DNA-directed RNA polymerase II subunit 4 OS=Morella rubra OX=262757 GN=CJ030_MR6...	[more]
A0A2N9G2U2	6.6e-67	96.38	RPOL4c domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21532 P...	[more]

BLAST of Lcy06g011330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133507.1	3.6e-67	97.83	DNA-directed RNA polymerase II subunit 4 [Momordica charantia]	[more]
XP_022954766.1	1.1e-66	97.10	DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata] >XP_022954773.1 DN...	[more]
XP_030924038.1	1.4e-66	96.38	DNA-directed RNA polymerase II subunit 4 [Quercus lobata] >KAB1210402.1 DNA-dire...	[more]
KAF3440471.1	1.8e-66	96.38	hypothetical protein FNV43_RR18755 [Rhamnella rubrinervis]	[more]
KAG8649808.1	3.1e-66	95.65	hypothetical protein MANES_08G141900v8 [Manihot esculenta]	[more]

BLAST of Lcy06g011330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09920.1	1.2e-68	92.75	RNA polymerase II, Rpb4, core protein	[more]
AT4G15950.1	2.6e-15	36.75	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 16..138 e-value: 1.4E-56 score: 203.9
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 23..132 e-value: 2.5E-22 score: 79.5
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 2..138 e-value: 4.5E-50 score: 170.9
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 1..138
None	No IPR available	PANTHER	PTHR21297:SF3	DNA-DIRECTED RNA POLYMERASE II SUBUNIT 4-LIKE	coord: 1..138
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 3..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g011330.1	Lcy06g011330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031990	mRNA export from nucleus in response to heat stress
biological_process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0031369	translation initiation factor binding