Lcy06g010410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g010410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Chr06: 11355716 .. 11356726 (+)
RNA-Seq Expression	Lcy06g010410
Synteny	Lcy06g010410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCTCTCTGTTTTCCCTTTCTCTCTCTAAAATCTCATCCTCATTTCAATTCTAAAATCACTTCCCTCTGCAATTCCGATCCAATCCCCCAATACCCACTTCGAAATCATCAAAATCCCCTGTTTTTCGCCATGTCAGCCGCCGTCGCCGCCGCCGCTGCCGCCGCTCTCAGCCGCCGGAGCTCCTCATCCACCGTCCCCCAATCCGCCTCCGACGCTTTCTACGGCCCCTACTGCCCCTCGGTCCGGTCGCCGCCATTGTTCGGCCGGTACGAGTCTCAGAAACGGCGGGACTGGAACAACTTCCGGCAGTTCTTAAGAAGCCGCTGCCCGACATTGAGCCTCGCCGGCTGCAGCGGCGCGAATGTCGTTGAGTTCCTCTGCTACCTCGACGAGTTCAGCCAAACCAAGATCCACGCCGCCACCTGCGCCAACTTCGGCCACCGCTACCCGGCGGATCATCTCTACTGCGATTGCCCCACCCGCCAGCCCTGGACCAGCCTCGTCGCCCTCATCGGCCGCCTCCGCGTCGCCTTCGTGGAGAACGGCGGGAATCCGGTGACCAACCCGTTCAACACCGTCGACGTCAAAGTTTACCTGAACGACGTCAAGGATTCTCAAGATCGATCTCGAGGAATTGATCGGTAAGAACAGTAAAATTTAAAAAAAAAATGGCGACAATGGAGAAATCCGATTTCTTTTGTTACATCTCCGCCGCGGAGCTCGGCGGCCATGGCGGTTTCCGATCACTCCTTCTAACCATGAAACTTTTACACTGGGAAAGATAATTTTGTGATGGGCTCAGACTGGTTTTGATAAATTTGACTGTTGATTTTGGTTATGTTGTACAAATTAAAGAATCTAGTTCATTTTTTTTTCTTTTCCTTTTGTGTAAAATTAAAGTTTGAAAATAGTGGAAATGAACTGTTTGGATTGAGTTAAAAAAGAGCACATTAGAGAGGAAGAGAAGTTGGGTTCTGTTTGTATCAATGAAATTTAGTTGTAAATTG

mRNA sequence

ATTCTCTCTCTGTTTTCCCTTTCTCTCTCTAAAATCTCATCCTCATTTCAATTCTAAAATCACTTCCCTCTGCAATTCCGATCCAATCCCCCAATACCCACTTCGAAATCATCAAAATCCCCTGTTTTTCGCCATGTCAGCCGCCGTCGCCGCCGCCGCTGCCGCCGCTCTCAGCCGCCGGAGCTCCTCATCCACCGTCCCCCAATCCGCCTCCGACGCTTTCTACGGCCCCTACTGCCCCTCGGTCCGGTCGCCGCCATTGTTCGGCCGGTACGAGTCTCAGAAACGGCGGGACTGGAACAACTTCCGGCAGTTCTTAAGAAGCCGCTGCCCGACATTGAGCCTCGCCGGCTGCAGCGGCGCGAATGTCGTTGAGTTCCTCTGCTACCTCGACGAGTTCAGCCAAACCAAGATCCACGCCGCCACCTGCGCCAACTTCGGCCACCGCTACCCGGCGGATCATCTCTACTGCGATTGCCCCACCCGCCAGCCCTGGACCAGCCTCGTCGCCCTCATCGGCCGCCTCCGCGTCGCCTTCGTGGAGAACGGCGGGAATCCGGTGACCAACCCGTTCAACACCGTCGACGTCAAAGTTTACCTGAACGACGTCAAGGATTCTCAAGATCGATCTCGAGGAATTGATCGGTAAGAACAGTAAAATTTAAAAAAAAAATGGCGACAATGGAGAAATCCGATTTCTTTTGTTACATCTCCGCCGCGGAGCTCGGCGGCCATGGCGGTTTCCGATCACTCCTTCTAACCATGAAACTTTTACACTGGGAAAGATAATTTTGTGATGGGCTCAGACTGGTTTTGATAAATTTGACTGTTGATTTTGGTTATGTTGTACAAATTAAAGAATCTAGTTCATTTTTTTTTCTTTTCCTTTTGTGTAAAATTAAAGTTTGAAAATAGTGGAAATGAACTGTTTGGATTGAGTTAAAAAAGAGCACATTAGAGAGGAAGAGAAGTTGGGTTCTGTTTGTATCAATGAAATTTAGTTGTAAATTG

Coding sequence (CDS)

ATGTCAGCCGCCGTCGCCGCCGCCGCTGCCGCCGCTCTCAGCCGCCGGAGCTCCTCATCCACCGTCCCCCAATCCGCCTCCGACGCTTTCTACGGCCCCTACTGCCCCTCGGTCCGGTCGCCGCCATTGTTCGGCCGGTACGAGTCTCAGAAACGGCGGGACTGGAACAACTTCCGGCAGTTCTTAAGAAGCCGCTGCCCGACATTGAGCCTCGCCGGCTGCAGCGGCGCGAATGTCGTTGAGTTCCTCTGCTACCTCGACGAGTTCAGCCAAACCAAGATCCACGCCGCCACCTGCGCCAACTTCGGCCACCGCTACCCGGCGGATCATCTCTACTGCGATTGCCCCACCCGCCAGCCCTGGACCAGCCTCGTCGCCCTCATCGGCCGCCTCCGCGTCGCCTTCGTGGAGAACGGCGGGAATCCGGTGACCAACCCGTTCAACACCGTCGACGTCAAAGTTTACCTGAACGACGTCAAGGATTCTCAAGATCGATCTCGAGGAATTGATCGGTAA

Protein sequence

MSAAVAAAAAAALSRRSSSSTVPQSASDAFYGPYCPSVRSPPLFGRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR

Homology

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BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 38  VRSPPLF-GRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHA 97
           V SPP    RYESQKRRDWN F Q+L++  P L+L+ CSGA+V+EFL YLD+F +TK+H 
Sbjct: 22  VSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 81

Query: 98  ATCANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYL 157
           A C  FGH+ P     C CP +Q W SL ALIGRLR A+ ENGG P +NPF    V++YL
Sbjct: 82  AACPYFGHQQPPSP--CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYL 141

Query: 158 NDVKDSQDRSRGI 170
            +V++SQ ++RGI
Sbjct: 142 REVRESQAKARGI 152

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BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-37
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 46  RYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHR 105
           RYESQKRRDWN F Q+LR+  P LSLA CSGA+V+EFL YLD+F +TK+HA  C  FGH 
Sbjct: 40  RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGH- 99

Query: 106 YPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDR 165
            PA    C CP RQ W SL AL+GRLR A+ ENGG P  NPF    V++YL +V++ Q R
Sbjct: 100 -PAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQAR 159

Query: 166 SRGI 170
           +RG+
Sbjct: 160 ARGV 161

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BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-37
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 7   AAAAAALSRRSSSSTVPQSASDAFYGPYCPSVRSPPLFGRYESQKRRDWNNFRQFLRSRC 66
           AAAA      SSSS    SA     GP  PS  SP L  RYESQKRRDWN F Q+LR+  
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGGP-SPSSSSPSL-SRYESQKRRDWNTFGQYLRNHR 102

Query: 67  PTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCPTRQPWTSLVA 126
           P LSL+ CSGA+V+EFL Y+D+F +TK+H   C  +GH  P     C CP RQ W SL A
Sbjct: 103 PPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGH--PNPPAPCPCPLRQAWGSLDA 162

Query: 127 LIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGI 170
           LIGRLR A+ ENGG P  NPF    V++YL +V+++Q R+RGI
Sbjct: 163 LIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-37
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 7   AAAAAALSRRSSSSTVPQSASDAFYGPYCPSVRSPPLFGRYESQKRRDWNNFRQFLRSRC 66
           AAAA      SSSS    SA     GP  PS  SP L  RYESQKRRDWN F Q+LR+  
Sbjct: 43  AAAAMFSGAGSSSSGAGTSAGGGGGGP-SPSSSSPSL-SRYESQKRRDWNTFGQYLRNHR 102

Query: 67  PTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCPTRQPWTSLVA 126
           P LSL+ CSGA+V+EFL Y+D+F +TK+H   C  +GH  P     C CP RQ W SL A
Sbjct: 103 PPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGH--PNPPAPCPCPLRQAWGSLDA 162

Query: 127 LIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGI 170
           LIGRLR A+ ENGG P  NPF    V++YL +V+++Q R+RGI
Sbjct: 163 LIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGI 201

[Close]

BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-37
Identity = 74/133 (55.64%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 37  SVRSPPLFGRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHA 96
           S  SPP   RYE+QKRRDWN F Q+LR+  P LSLA CSGA+V++FL YLD+F +TK+H 
Sbjct: 24  SFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHH 83

Query: 97  ATCANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYL 156
             CA FG   P     C CP RQ W SL ALIGRLR A+ ENGG P T+PF +  V+++L
Sbjct: 84  QNCAFFG--LPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFL 143

Query: 157 NDVKDSQDRSRGI 170
            +V+D Q +SRG+
Sbjct: 144 REVRDFQAKSRGV 154

[Close]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 139/175 (79.43%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSSTVPQSASDAFYGPYCP----SVRSPPLFGRYESQKRRDWN 60
           MSAAVAAAAAAAL RR+SS++ P S+SD+FY  Y P    SVR PPL  RYE  KRRDWN
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTP-SSSDSFYSHYYPSASVSVRPPPLLSRYECLKRRDWN 60

Query: 61  NFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCP 120
            FRQ+LRSRCPTLSLA CSGANVVEFLCYLDE  Q+KIH ATC NFG RYP D  YCDCP
Sbjct: 61  RFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP-YCDCP 120

Query: 121 TRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           T+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTVDVKVYLNDVKDSQ+RSRGIDR
Sbjct: 121 TQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL
Match: A0A1S3C9J9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 139/175 (79.43%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSSTVPQSASDAFYGPYCP----SVRSPPLFGRYESQKRRDWN 60
           MSAAVAAAAAAAL RR+SS++ P S+SD+FY  Y P    SVR PPL  RYE  KRRDWN
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTP-SSSDSFYSHYYPSASVSVRPPPLLSRYECLKRRDWN 60

Query: 61  NFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCP 120
            FRQ+LRSRCPTLSLA CSGANVVEFLCYLDE  Q+KIH ATC NFG RYP D  YCDCP
Sbjct: 61  RFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP-YCDCP 120

Query: 121 TRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           T+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTVDVKVYLNDVKDSQ+RSRGIDR
Sbjct: 121 TQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL
Match: A0A0A0LY69 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 132/180 (73.33%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRR-----SSSSTVPQSASDAFYGPYCP----SVRSPPLFGRYESQK 60
           MSAAVAAAAAAALSRR     SSS+T+ +S+SD+FY  Y P    SVR  PL  RY+  K
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHL 120
           RRDWN FRQ+LRSR PTLSLA CSG+NVVEFL YLD   Q+KIH ATC +FGHRYP D  
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDP- 120

Query: 121 YCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           YCDCPT+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTV VKVYLN VKDSQ+ SRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL
Match: A0A6J1EH11 (protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 127/181 (70.17%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 1   MSAAV-AAAAAAALSRRSSSS-----TVPQSASDAFYGPYCP----SVRSPPLFGRYESQ 60
           MSAAV AAAAAAAL+RRSSSS     T  +S+S +FY  Y P    SVR PPL  RYE +
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADH 120
           KR DW+ FRQ+LRSRCPTLSL+ C+GA++VEFLCYLDEF  TK+HA TC NFGHRYP D 
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 LYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGID 172
            YCDCPT+QPW S+  LI RLRVAF ENGGNPVTNPFN VDVK+YL+D+KDSQ+RSRGID
Sbjct: 121 -YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 180

[Close]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL
Match: A0A6J1KGB9 (protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.0e-61
Identity = 127/182 (69.78%), Postives = 144/182 (79.12%), Query Frame = 0


Query: 1   MSAAV-AAAAAAALSRRSSSS------TVPQSASDAFYGPYCP----SVRSPPLFGRYES 60
           MSAAV AAAAAAAL+RRSSSS      T  +S+S +FY  Y P    SVR PPL  RYE 
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  QKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPAD 120
           +KR DW+ FRQ+LRSRCPTLSLA C+GA++VEFLCYLDEF  TK+HA TC NFGHRYP D
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 HLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGI 172
             YCDCPT+QPW S+  LI RLRVAF ENGGNPVTNPFN VDVK+YL+ +KDSQ+RSRGI
Sbjct: 121 P-YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGI 180

[Close]

BLAST of Lcy06g010410 vs. NCBI nr
Match: XP_008459123.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA0047053.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa] >TYK30589.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 8.2e-69
Identity = 139/175 (79.43%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSSTVPQSASDAFYGPYCP----SVRSPPLFGRYESQKRRDWN 60
           MSAAVAAAAAAAL RR+SS++ P S+SD+FY  Y P    SVR PPL  RYE  KRRDWN
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTP-SSSDSFYSHYYPSASVSVRPPPLLSRYECLKRRDWN 60

Query: 61  NFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCP 120
            FRQ+LRSRCPTLSLA CSGANVVEFLCYLDE  Q+KIH ATC NFG RYP D  YCDCP
Sbjct: 61  RFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP-YCDCP 120

Query: 121 TRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           T+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTVDVKVYLNDVKDSQ+RSRGIDR
Sbjct: 121 TQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of Lcy06g010410 vs. NCBI nr
Match: XP_038894791.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 4.0e-68
Identity = 138/178 (77.53%), Postives = 149/178 (83.71%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSSTV---PQSASDAFYGPYCP----SVRSPPLFGRYESQKRR 60
           MSAAVAAAAAAALSRRSSS+T     +S S++FY  Y P    SVR PPL  RYE  KRR
Sbjct: 1   MSAAVAAAAAAALSRRSSSTTTTTSTRSPSESFYAQYYPSVSVSVRPPPLASRYECLKRR 60

Query: 61  DWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYC 120
           DWN FRQ+LR+RCPTLSLA CSGANVVEFLCYLDE  QTK+H ATC NFGH YP D  YC
Sbjct: 61  DWNRFRQYLRNRCPTLSLACCSGANVVEFLCYLDELGQTKVHTATCPNFGHLYPVDP-YC 120

Query: 121 DCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           +CPT+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTVDVK+YLNDVKDSQDRSRGIDR
Sbjct: 121 NCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKIYLNDVKDSQDRSRGIDR 177

[Close]

BLAST of Lcy06g010410 vs. NCBI nr
Match: KAG7019447.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 8.7e-63
Identity = 127/180 (70.56%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSS-----TVPQSASDAFYGPYCP----SVRSPPLFGRYESQK 60
           MSAAVAAAAAAAL+RRSSSS     T  +S+S +FY  Y P    SVR PPL  RYE +K
Sbjct: 1   MSAAVAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRK 60

Query: 61  RRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHL 120
           R DW+ FRQ+LRSRCPTLSL+ C+GA++VEFLCYLDEF  TK+HA TC NFGHRYP D  
Sbjct: 61  RLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP- 120

Query: 121 YCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           YCDCPT+QPW S+  LI RLRVAF ENGGNPVTNPFN VDVK+YL+D+KDSQ+RSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of Lcy06g010410 vs. NCBI nr
Match: KAG6583821.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250.8 bits (639), Expect = 8.7e-63
Identity = 127/180 (70.56%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRRSSSS-----TVPQSASDAFYGPYCP----SVRSPPLFGRYESQK 60
           MSAAVAAAAAAAL+RRSSSS     T  +S+S +FY  Y P    SVR PPL  RYE +K
Sbjct: 1   MSAAVAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRK 60

Query: 61  RRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHL 120
           R DW+ FRQ+LRSRCPTLSL+ C+GA++VEFLCYLDEF  TK+HA TC NFGHRYP D  
Sbjct: 61  RLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP- 120

Query: 121 YCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           YCDCPT+QPW S+  LI RLRVAF ENGGNPVTNPFN VDVK+YL+D+KDSQ+RSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of Lcy06g010410 vs. NCBI nr
Match: XP_004135751.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothetical protein Csa_023208 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 132/180 (73.33%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALSRR-----SSSSTVPQSASDAFYGPYCP----SVRSPPLFGRYESQK 60
           MSAAVAAAAAAALSRR     SSS+T+ +S+SD+FY  Y P    SVR  PL  RY+  K
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHL 120
           RRDWN FRQ+LRSR PTLSLA CSG+NVVEFL YLD   Q+KIH ATC +FGHRYP D  
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDP- 120

Query: 121 YCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGIDR 172
           YCDCPT+QPWT+LVALIGRLRVAF ENGGNPVTNPFNTV VKVYLN VKDSQ+ SRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of Lcy06g010410 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-39
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 38  VRSPPLF-GRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHA 97
           V SPP    RYESQKRRDWN F Q+L++  P L+L+ CSGA+V+EFL YLD+F +TK+H 
Sbjct: 22  VSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHV 81

Query: 98  ATCANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYL 157
           A C  FGH+ P     C CP +Q W SL ALIGRLR A+ ENGG P +NPF    V++YL
Sbjct: 82  AACPYFGHQQPPSP--CSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYL 141

Query: 158 NDVKDSQDRSRGI 170
            +V++SQ ++RGI
Sbjct: 142 REVRESQAKARGI 152

[Close]

BLAST of Lcy06g010410 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 74/133 (55.64%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 37  SVRSPPLFGRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHA 96
           S  SPP   RYE+QKRRDWN F Q+LR+  P LSLA CSGA+V++FL YLD+F +TK+H 
Sbjct: 24  SFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHH 83

Query: 97  ATCANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYL 156
             CA FG   P     C CP RQ W SL ALIGRLR A+ ENGG P T+PF +  V+++L
Sbjct: 84  QNCAFFG--LPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFL 143

Query: 157 NDVKDSQDRSRGI 170
            +V+D Q +SRG+
Sbjct: 144 REVRDFQAKSRGV 154

[Close]

BLAST of Lcy06g010410 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 151.8 bits (382), Expect = 5.1e-37
Identity = 83/165 (50.30%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 5   VAAAAAAALSRRSSSSTVPQSASDAFYGPYCPSVRSPPLFGRYESQKRRDWNNFRQFLRS 64
           +AAAA    +  SSSS+   S ++                 RYE+QKRRDWN F Q+LR+
Sbjct: 21  IAAAATTTTTSSSSSSSSGGSGTNQ--------------LSRYENQKRRDWNTFGQYLRN 80

Query: 65  RCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCPTRQPWTSL 124
             P LSL+ CSGA+V+EFL YLD+F +TK+H   C  FGH  P     C CP RQ W SL
Sbjct: 81  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH--PNPPAPCACPLRQAWGSL 140

Query: 125 VALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGI 170
            ALIGRLR AF ENGG+P TNPF    V++YL +V+DSQ ++RGI
Sbjct: 141 DALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of Lcy06g010410 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 71/130 (54.62%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 40  SPPLFGRYESQKRRDWNNFRQFLRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATC 99
           +PP   RYE+QKRRDWN F Q+LR+  P LSL  CSGA+V+EFL YLD+F +TK+H   C
Sbjct: 19  TPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNC 78

Query: 100 ANFGHRYPADHLYCDCPTRQPWTSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDV 159
           A FG   P     C CP RQ W SL ALIGRLR A+ ENGG P  NPF +  V+++L +V
Sbjct: 79  AFFG--LPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREV 138

Query: 160 KDSQDRSRGI 170
           +D Q ++RG+
Sbjct: 139 RDFQAKARGV 146

[Close]

BLAST of Lcy06g010410 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-35
Identity = 79/168 (47.02%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 2   SAAVAAAAAAALSRRSSSSTVPQSASDAFYGPYCPSVRSPPLFGRYESQKRRDWNNFRQF 61
           S++V  A     ++  SSS+ P + S                  RYE+QKRRDWN F Q+
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANS-----------------SRYENQKRRDWNTFGQY 86

Query: 62  LRSRCPTLSLAGCSGANVVEFLCYLDEFSQTKIHAATCANFGHRYPADHLYCDCPTRQPW 121
           LR+  P LSL+ CSGA+V+EFL YLD+F +TK+H   C  +GH  P     C CP RQ W
Sbjct: 87  LRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH--PNPPAPCPCPLRQAW 146

Query: 122 TSLVALIGRLRVAFVENGGNPVTNPFNTVDVKVYLNDVKDSQDRSRGI 170
            SL ALIGRLR AF ENGG P TNPF    V++YL +V+D Q ++RG+
Sbjct: 147 GSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

The following BLAST results are available for this feature:

BLAST of Lcy06g010410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK2	1.0e-37	55.64	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	2.3e-37	58.87	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2XAV5	3.8e-37	53.37	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	3.8e-37	53.37	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9M836	3.8e-37	55.64	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Lcy06g010410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E452	3.9e-69	79.43	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C9J9	3.9e-69	79.43	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LY69	1.2e-62	73.33	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 S...	[more]
A0A6J1EH11	1.0e-61	70.17	protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1	[more]
A0A6J1KGB9	4.0e-61	69.78	protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1	[more]

BLAST of Lcy06g010410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459123.1	8.2e-69	79.43	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA00...	[more]
XP_038894791.1	4.0e-68	77.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
KAG7019447.1	8.7e-63	70.56	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583821.1	8.7e-63	70.56	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_004135751.1	2.5e-62	73.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothe...	[more]

BLAST of Lcy06g010410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	7.2e-39	55.64	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.7e-38	55.64	Protein of unknown function (DUF640)	[more]
AT3G23290.2	5.1e-37	50.30	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.1e-36	54.62	Protein of unknown function (DUF640)	[more]
AT2G31160.1	4.8e-35	47.02	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 39..161 e-value: 1.3E-43 score: 148.1
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 46..171 score: 41.630707
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 15..170
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 15..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g010410.1	Lcy06g010410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus