Lcy06g009310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g009310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr06: 9437563 .. 9442118 (+)
RNA-Seq ExpressionLcy06g009310
SyntenyLcy06g009310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTGAAAATAATCCCCCAAAACACGTTTCACTGCTACCGTCTTCTTCCTTCCGAAAACGCAGCTATCGTCTTCTTCCTTCCGAAAACACTGCTATCGTCTTCTCCATTGTATCGTTTAGGGCTTCGTCTTCTTCACGGCGACAATCTGGTGGGTTTCACGGCGAAGAAAGGTACTGATTTTGGGGTTTTCGGTTTATGATTTTGCAATATTAGGGGTTTTTATCTGTAGGTTCTTAGGTTAAAAAATCAGTGAGTTGCTTCACCTTCTTCATATTTGTTAGTTCTGTCTATATTGTGTTATCTTTCATCACTTACAAGCAGGTATGAAATTCGTTTTTTCATAAGTCGATTATATATACCACTTACAAACAGGTATATGAAATTCGTTTATATCCAAAAGAAAAAAAAAGATACAAATATTGGTTGGAACAACTTATATATTATTGAATGAAAAATATAACATTGCTAAGAATATTAGGTTAATGGAATTAATGAGAAATGAAAGTCGATTTCATATACCTGGAAAAGCAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAAATATGTATCTTTTTTTTTTTTGAAAAGTGCAAATATGTATCTAATATACCGACGTTTAGATTGAAAATCAAATGGAATAGTTATAATATAACCTCTATATTTTAATCCAAAATGTGGTGTCAAAATTAAAAAAAAAAATATACAATAAAAAGATAACAAATTGAACAAATACACAACAGATGTACATACTCAACTACAGAACCGAAAAAGCAACATGTGAAAATCTTGAAGGAATAAGACACAAATTGGTGAAGGGTAGGGACAAAAAAAAACAACCTGTGAAACAACTCTGCCAATCGAAAATTGGACGGAAAATTGAAAAGGAGAGTGAATTTTGAAATAAATCCTGAATTTTGAAAATCTTGTGCTAATAAGTTGGGATTAGAATGGACGGAAAAAAAAAAGAAGCTAATTTAGGAATATAAAATCTATAATAATAATTTTCAAAATTAGATTTTTTACAAAGGATCCCTAATTATAAGGAAATATTTGTTGGGGGCAATATTTAAGGAAAAAAAGGCCACTCAATTATATTTCCCTAAATTCTTTAATTGAAAATTTGAGATTTATTCTAATATATTATTAAATTAAATTTATTCCATTCATTAAAGGGGCGTTTGGGGCACTGAATAGGTTATAATAACCCCTTTTATTATAACCTATTCAGTGTTTGGGGCATCAACAAAAATAAATGGTGAGGTGGGTTATTTTTACCCCCAATTATTTTATCCATTCTCTACAGTAACCATCATTCAACTCACTCGATTATTCTATCCATTTTCTACAGTAACTCTCTCCTCGCTTCTTCCATGCGACTCTTTGACTTTTCCGACGACCGCCGGCGAAGATTCCAGCGACTTTTCCGACGATTGCCGACGACTTTTCCGGCCACAAATTTTTTTTTCTTTTTTTTTCATATTTCTTCTCATTTTCATTTTGAAAAATATAAAAAATCAAAATAAAGAAAAAAAAAACATTGAAGGTTAACCAACTTTAAAAAAAAAAAAAGAACATTCAAACGAAATTGTATTTACCACACTCAAGTTTATTTAAAATGGTTTTATTGATTAGAAAAAAAAAACTAATATGATTTTTGAACTAAACATTTACAATTTTTATTTTGGCAATACTAAAAGTTAACTAATCTGATTTTTCTATACTAAATCCTAAACTTTTTTGTTTTGTAAAAAAAAAAAAAACATAACCCTAAATCAAATTGATTCGTATATCATAAAAAAAACTAGAAAAAGAAAACAGTCAGTTTGAACCTTTGATTCAGAACCCCATGTTAAAACAGATCAGCACTTCAAACACAGACTATTTTATCCCAGACTAAAATAATCTGCATCCCAAACACAGATTATTTTATCCCAGACTAAAATAATCTGCACCCCAAACACAAAATATTTTATCCCAGACTATAATATTCTGCATCCCAAACACAGATTATTATAACCCCCAGACTATTATAACCACCAGATATTATAACCAATTCAGCGCCCCAAACAGCCCCTTAATGAAAGGGTATTTTGGTAAGAAAAAGAACTCAATTAATGTGAAAAAACCTACGCATAATAATTTTAATTATTAAGGACATTTGTGAAATTTGGGGATCAATTTGACCCATCCGCTATAATTTCTGTAAATATAATTAAATTCTTTTGTTTGTAACTTGTTGCGCTACGTTGTTGTGGTCCAACACTTGTGGACTGGACTTGACCCATGGGCCTAAATGTATGAGCTAGCTTGTGGTGGAAAGCCCAAGTTTTGAAGAGAATAGTTCTTTGGGACAACGAGATAAATGACCATTTTAAAATAGCTGTTTTGAAAAAAAAGTCATTCGGGTTTGCAATCTGAGAAATGACCAAAAGCTATTTTTAGTAAAATTTTTTGGCAACAAAGTGGAAGAAAATACCCCTATCCAAATCTTAATTCAGAAAATAAAATAAACCAAATACACTATAAACAAGGGAGAAAATCTAGCTTTCTTACCGACTAATTCAACTAGCAAATCAATAACAGAAATTCAAACTAAATAGAATATAAATCTGGCAACTAAAATTTAAAACAAGAGATTTGAATTCAAATCAGGGAGAAAAAATAGGAGGACTTAAATTTAAACACTGTATATTCGAAAAAGTAAAGAGCTTACCAGTTGCAACTAAGATTCAATAAAAATGAAGAACAACTTCGTTCATCTAAAATATATTTCAGGCACCAAATCAAAGAAGAAAAAATCAATTCACGCATGATGCTTGGAAAATAGAGATTCAGCTAAAATTTAAGATGAACACCTAAAACATCAAATCAGAATTAAAGTATAATCTGAAAATAATGAATAAACTGATACTCCATTTTCAAAGAAGACAAGGATTTTATTGGATTACGCGATGTATTTCCAAATTAAAGTATAATCAGGATTTTGTTGCATACAAGCCTAAGAACTAAGGGTTTACCAGAAATATTGTTGTACAAAGAGAAACAGTTAATTTTTCCATTATTCTAAGATGAAAGCTTACACTAGTTTTCAAAAGAAGGATAAAAAATTACATTAACGAACAAAAAAAATCAATGTGATTTTTAAAAAGCGAATACACTCATTCAAAACATACCTATGGTCGCCCCAACGGTGTTCGATCAACTTGTTCGGAGAGATGATGAATAGAGAGAATTGATACTGTAAAAATAATCTGGAAAACCAACAAACGAATATTTTCCGAAGAAACGATGAAGAGGGAGAACTTATGCAGTGAAAATCTTCAGGAAAACAGATTGTAGATGGAAGAGAGAGAGTTGATCCTGTAACTATTAGTTCCTTGATTCATGGAATGATAGGTTACGAATTTATTTTAAAAAATAATCAGATAATATAGGAGAGAGACGTGGGGCATGGCTGAAGGGTAAAAATGGTACTTTGTATCGCACGAAAATAGGTTGGAAAAACCGATTTGACCATTTTTCATTAAAAAATACGGTTTGACCATTTTTCATTAAAAAATAAGATACAAACTTAGATTAAAAAAAAATCTGAAAATTAGACTGAGGTATTTAGATAATCTCAAATGAATAAATGACATCAAAAAAAAATTAATGAATATTTCGAGTGATCTAGAAATAGTGTTGAATATCCGTAAAAGGGGAATCGATTCTCTAACCATATATGTTTGTTTTGCAGGAAGAGCGAGGAAACTACATCTCACGCTATATGGAGTTGTAAAGTTGGCCAAAAGAGTGTGGATAAACTACATTCCCCAAACAAATTCTTTATTTGGTATGAACAGGGATAATTGGAGACCTATCGACTATTGGAATTGGATGCACAAGCACTTGAAGGATGAGGAATTGGAGAAAGCTATCCTAATTCTTTGGGAAATTTGGAGACATAGAAACAACATATTAAACAACGCCAACAAGCCAGATTAGAGTACTCTAGTCAAAGAAATTGAAATCAAGCTGCAAGAAAGTTCATCCTACTAGGCTGATAATGCAGCGGATTCCCCTCAGAGGTCGGAGAGCCAGAAGAGTCAAGCCTCTTGGTTTCCCCCTCCGCCTGGGTTGTGGATGCTTCTCGGTTTGAATCCCAGGTATTTGGAGGAGTGGGGGTGGTCCATGCGTGACTCCTCAGGATCTTCAATCTGCTCGGGTTATAGGAAAATCATCAAGAAAGAATCGGTCAAAATGCTGGAAATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGAGCTTTTCGGTCAGACCTCTCCATTCCAGGCATTATCATCGAATCAGACGCCATTGGCGTGATCAAGCTGCTGAACAGCGAAGAGGAAGACCAGTTCGAGATTGCCTTCTTGGTTGAGGTAATCGAGCAGCTGAAGAAGTCTTATGCCAAGATTTCGTTCTCCTACTGCCCGCGTTCGCGTAACAAGGAAGTCTCACTCTTTGGAGCGAAGGGCTGTCGTTGATCACCAATGTTCTTG

mRNA sequence

ATGGCATTTGAAAATAATCCCCCAAAACACGTTTCACTGCTACCGTCTTCTTCCTTCCGAAAACGCAGCTATCGTCTTCTTCCTTCCGAAAACACTGCTATCGTCTTCTCCATTGTATCGTTTAGGGCTTCGTCTTCTTCACGGCGACAATCTGGTGGGTTTCACGGCGAAGAAAGGAAGAGCGAGGAAACTACATCTCACGCTATATGGAGTTGTAAAAGGTCGGAGAGCCAGAAGAGTCAAGCCTCTTGGTTTCCCCCTCCGCCTGGGTTGTGGATGCTTCTCGGTTTGAATCCCAGGTATTTGGAGGAGTGGGGGTGGTCCATGCGTGACTCCTCAGGATCTTCAATCTGCTCGGGTTATAGGAAAATCATCAAGAAAGAATCGGTCAAAATGCTGGAAATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGAGCTTTTCGGTCAGACCTCTCCATTCCAGGCATTATCATCGAATCAGACGCCATTGGCGTGATCAAGCTGCTGAACAGCGAAGAGGAAGACCAGTTCGAGATTGCCTTCTTGGTTGAGGTAATCGAGCAGCTGAAGAAGTCTTATGCCAAGATTTCGTTCTCCTACTGCCCGCGTTCGCGTAACAAGGAAGTCTCACTCTTTGGAGCGAAGGGCTGTCGTTGATCACCAATGTTCTTG

Coding sequence (CDS)

ATGGCATTTGAAAATAATCCCCCAAAACACGTTTCACTGCTACCGTCTTCTTCCTTCCGAAAACGCAGCTATCGTCTTCTTCCTTCCGAAAACACTGCTATCGTCTTCTCCATTGTATCGTTTAGGGCTTCGTCTTCTTCACGGCGACAATCTGGTGGGTTTCACGGCGAAGAAAGGAAGAGCGAGGAAACTACATCTCACGCTATATGGAGTTGTAAAAGGTCGGAGAGCCAGAAGAGTCAAGCCTCTTGGTTTCCCCCTCCGCCTGGGTTGTGGATGCTTCTCGGTTTGAATCCCAGGTATTTGGAGGAGTGGGGGTGGTCCATGCGTGACTCCTCAGGATCTTCAATCTGCTCGGGTTATAGGAAAATCATCAAGAAAGAATCGGTCAAAATGCTGGAAATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGAGCTTTTCGGTCAGACCTCTCCATTCCAGGCATTATCATCGAATCAGACGCCATTGGCGTGATCAAGCTGCTGAACAGCGAAGAGGAAGACCAGTTCGAGATTGCCTTCTTGGTTGAGGTAATCGAGCAGCTGAAGAAGTCTTATGCCAAGATTTCGTTCTCCTACTGCCCGCGTTCGCGTAACAAGGAAGTCTCACTCTTTGGAGCGAAGGGCTGTCGTTGA

Protein sequence

MAFENNPPKHVSLLPSSSFRKRSYRLLPSENTAIVFSIVSFRASSSSRRQSGGFHGEERKSEETTSHAIWSCKRSESQKSQASWFPPPPGLWMLLGLNPRYLEEWGWSMRDSSGSSICSGYRKIIKKESVKMLEMRAIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKKSYAKISFSYCPRSRNKEVSLFGAKGCR
Homology
[Close]
BLAST of Lcy06g009310 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-06
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0 

Query: 82  ASWFPPPPGLWMLLGLNPRYLEEW-----GWSMRDSSGSSICSGYRKIIKKESVKMLEMR 141
           A W PP    W  L  N  +  +      GW +RD  G  I +  R I  + ++  LE+ 
Sbjct: 77  AQWKPPTSNSWK-LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVM 136

Query: 142 AIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKKS 201
           AI EGL      RA R +   P I +ESD++  I LL+ + +DQ EI +L+E I Q+ K 
Sbjct: 137 AICEGL------RAIRQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKD 196

Query: 202 YAKISFSYCPRSRNK 212
              +S  +  R  NK
Sbjct: 197 MEIVSMRHISREANK 203

[Close]
BLAST of Lcy06g009310 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0 

Query: 80  SQASWFPPPPGLWMLLG----LNPRYLEEWGWSMRDSSGSSICSGYRKIIKKESVKMLEM 139
           ++  W PPP  +W L       +  +    GW +R   G  + +G R +    +VK+LE 
Sbjct: 67  NKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEA 126

Query: 140 RAIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKK 199
            AI+EGL  L ++   R       + IE+D+  V  LLN + ED  +  ++VE I  L+ 
Sbjct: 127 SAILEGLRNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRD 186

Query: 200 SYAKISFSYCPRSRN 211
           S   ++F+   R  N
Sbjct: 187 SCEILAFAKVGRETN 195

[Close]
BLAST of Lcy06g009310 vs. ExPASy TrEMBL
Match: A0A7J9L178 (RNase H domain-containing protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_006096 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.5e-04
Identity = 31/85 (36.47%), Postives = 45/85 (52.94%), Query Frame = 0 

Query: 138 IVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKKSY 197
           + E   CL  I  F  +L  P II+E DA+ +IK L S+E+D   ++FL+  I++   S+
Sbjct: 16  VAEARACLQVI-TFMKELLFPEIIVEGDALTIIKKLRSDEKDISIVSFLINEIKEWVNSF 75

Query: 198 AKISFSYCPRSRNKEVSLFGAKGCR 223
             + F Y PR  N    L   KG R
Sbjct: 76  ILVKFRYIPRQGNDATHLLVEKGRR 99

[Close]
BLAST of Lcy06g009310 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-05
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 0 

Query: 82  ASWFPPPPGLWMLLGLNPRYLEEW-----GWSMRDSSGSSICSGYRKIIKKESVKMLEMR 141
           A W PP    W  L  N  +  +      GW +RD  G  I +  R I  + ++  LE+ 
Sbjct: 77  AQWKPPTSNSWK-LNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVM 136

Query: 142 AIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKKS 201
           AI EGL      RA R +   P I +ESD++  I LL+ + +DQ EI +L+E I Q+ K 
Sbjct: 137 AICEGL------RAIRQEHCRP-IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKD 196

Query: 202 YAKISFSYCPRSRNK 212
              +S  +  R  NK
Sbjct: 197 MEIVSMRHISREANK 203

[Close]
BLAST of Lcy06g009310 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 4.1e-04
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0 

Query: 80  SQASWFPPPPGLWMLLG----LNPRYLEEWGWSMRDSSGSSICSGYRKIIKKESVKMLEM 139
           ++  W PPP  +W L       +  +    GW +R   G  + +G R +    +VK+LE 
Sbjct: 67  NKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEA 126

Query: 140 RAIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQLKK 199
            AI+EGL  L ++   R       + IE+D+  V  LLN + ED  +  ++VE I  L+ 
Sbjct: 127 SAILEGLRNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRD 186

Query: 200 SYAKISFSYCPRSRN 211
           S   ++F+   R  N
Sbjct: 187 SCEILAFAKVGRETN 195

[Close]
BLAST of Lcy06g009310 vs. NCBI nr
Match: XP_024950112.1 (uncharacterized protein LOC112496847 [Citrus sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 4.1e-04
Identity = 38/137 (27.74%), Postives = 70/137 (51.09%), Query Frame = 0 

Query: 78   QKSQASWFPPPPGLWML---LGLNPRYLEEW-GWSMRDSSGSSICSGYRKIIKKESVKML 137
            ++ Q  W PPP  ++ +      N + L    G  +RDS+G  + +G  + + K S  + 
Sbjct: 1228 KEKQQEWLPPPQNVFKVNVDAAFNSKNLSAGVGAVIRDSNGKIVAAGVNQNLLKGSASLA 1287

Query: 138  EMRAIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVEVIEQL 197
            E  A++ GL       A  +D+S   +IIESD + V++L+N+ +  + EI + +  I+  
Sbjct: 1288 EAEAVLWGLQL-----ARNADVS--SLIIESDCLEVVQLVNNTKGSRSEIFWTILAIQNQ 1347

Query: 198  KKSYAKISFSYCPRSRN 211
             K + K+  ++ PR  N
Sbjct: 1348 MKIFQKVVVNHIPRHCN 1357

[Close]
BLAST of Lcy06g009310 vs. NCBI nr
Match: XP_015385737.1 (uncharacterized protein LOC107177033 [Citrus sinensis])

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-04
Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 0 

Query: 73  KRSESQKSQASWFPPPPGLWML---LGLN-PRYLEEWGWSMRDSSGSSICSGYRKIIKKE 132
           K + S K+Q  W PPP   + +     +N  R     G  +RDSS     +  +  +   
Sbjct: 61  KATSSSKNQQVWSPPPDNTFKVNVDAAVNFDRQKAGLGVVIRDSSNKVKVAAVKSTLFTG 120

Query: 133 SVKMLEMRAIVEGLNCLPSIRAFRSDLSIPGIIIESDAIGVIKLLNSEEEDQFEIAFLVE 192
            V+  E  A+  GL    S  AF+       I++ESD   V+KL+N+ E  + EI +++ 
Sbjct: 121 DVQTAEAEAVEWGLVVAKS-AAFQC------IMVESDCQEVVKLINNNEGSRTEIMWVIS 180

Query: 193 VIEQLKKSYAKISFSYCPRSRN 211
            I+ L K +  IS+ + PRS N
Sbjct: 181 EIQSLSKDFQNISYYHTPRSCN 195

[Close]
BLAST of Lcy06g009310 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 4.4e-04
Identity = 44/178 (24.72%), Postives = 78/178 (43.82%), Query Frame = 0 

Query: 54  FHGEERKSEETTSHAI-----WSCKRS--------ESQKSQASWFPPPPGLWMLLGLNPR 113
           F G+E  + E    A+     WS +R         + +++ +  +  PP  W+    +  
Sbjct: 93  FKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDAT 152

Query: 114 YLEE-----WGWSMRDSSGSSICSGYRKIIKKESVKMLEMRAIVEGLNCLPSIRAFRSDL 173
           +  E      GW +R+ SG  +  G R + + ++V   E+ A+   +  +       S  
Sbjct: 153 WQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTM-------SRF 212

Query: 174 SIPGIIIESDAIGVIKLLNSEEEDQF--EIAFLVEVIEQLKKSYAKISFSYCPRSRNK 212
           +   II ESDA  ++ LLNS   D F   +   +E I+QL   + ++ F + PR  NK
Sbjct: 213 NYKRIIFESDAQALVNLLNS---DDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNK 260

The following BLAST results are available for this feature:
BLAST of Lcy06g009310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g009310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CP266.2e-0634.07uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DNV92.0e-0429.63uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A7J9L1787.5e-0436.47RNase H domain-containing protein (Fragment) OS=Gossypium schwendimanii OX=34291... [more]
BLAST of Lcy06g009310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143535.11.3e-0534.07uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022155262.14.1e-0429.63uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_024950112.14.1e-0427.74uncharacterized protein LOC112496847 [Citrus sinensis][more]
XP_015385737.19.1e-0430.28uncharacterized protein LOC107177033 [Citrus sinensis][more]
BLAST of Lcy06g009310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G34320.14.4e-0424.72Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 97..220
e-value: 8.1E-9
score: 37.5
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 105..214
e-value: 7.0E-13
score: 48.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..69
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 105..211
e-value: 7.19512E-14
score: 63.8724

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g009310.1Lcy06g009310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity