Lcy06g008970 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g008970
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein TIFY 5A-like
Location	Chr06: 9043223 .. 9043947 (-)
RNA-Seq Expression	Lcy06g008970
Synteny	Lcy06g008970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTGCCAACCCAACCAAACAAACAAATCCTATATATATATTCCTTTCCTTTCTTCTTCTTCTTCACCTTCCTTAACCTTCCCTTTGACTCCATCACAAATTTTCCCACTTCAATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTACTATTTCTATAACAAGTGATTATCGATATTAATTAATTAGGTAGAGTTGGCATTGGTGTTGAGACGATGGACTTAGATGTATTTAGTTAAATTATTATTCATGTTTTTGTAGGTGAGGGCGATAATTGTACAAGCCACGAAGCAAATGGAGGAGACAAGATTGATGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAGCTTAATTAATATTATTCTCAGTTTCACCTTATAAATTTTGACCTTCTTTTCAGTTTTTTTAGTTAGGAGTTGAGTTTCGATTGTATTGTATTGTATTGTATTGTATATATTGGCCTTGTTTATTTGCTTATATAGATTATTATATACTCAGATTTCTCCTTTAAT

mRNA sequence

CCATTTGCCAACCCAACCAAACAAACAAATCCTATATATATATTCCTTTCCTTTCTTCTTCTTCTTCACCTTCCTTAACCTTCCCTTTGACTCCATCACAAATTTTCCCACTTCAATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTGAGGGCGATAATTGTACAAGCCACGAAGCAAATGGAGGAGACAAGATTGATGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAGCTTAATTAATATTATTCTCAGTTTCACCTTATAAATTTTGACCTTCTTTTCAGTTTTTTTAGTTAGGAGTTGAGTTTCGATTGTATTGTATTGTATTGTATTGTATATATTGGCCTTGTTTATTTGCTTATATAGATTATTATATACTCAGATTTCTCCTTTAAT

Coding sequence (CDS)

ATGGAAACCATCCTCAACTGCAACTTGGACCTCTGTCTCTCTCCCCCTTCTTCCTCCGCCACCGCCGACTCACCACACAACCGCGTCAGCCCTACTGGACTCCCGGTTGTCGATCCGACCGAGCTCCAGGTGAGGGCGATAATTGTACAAGCCACGAAGCAAATGGAGGAGACAAGATTGATGCCTCGGATCAGATCGGAAGCGTCTTCGACGTCGATCGACCAGCTATCGATGAAGAGCGGAGCCAGCCCCGCCATGAGGAGATCGTTGCAAAGCTTTTTACAGAAGAGAAAGCATCGAATTCAAACACTTTCACCTTATACTCATTAG

Protein sequence

METILNCNLDLCLSPPSSSATADSPHNRVSPTGLPVVDPTELQVRAIIVQATKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH

Homology

[Close]

BLAST of Lcy06g008970 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQATK 60
           ME ILNCNL+LCLSPPSSS       +T+ S HN + PT +P+ D TELQ RAIIV+AT 
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRATT 60

Query: 61  QMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  QMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

[Close]

BLAST of Lcy06g008970 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-----------ATADSPHNRVSPTGLPVVDPTELQVRAIIV 60
           ME ILNCNL+LCLSPPSSS           +T+ S HN   PT +P++D TELQ RAIIV
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNH--PTRVPLLDLTELQARAIIV 60

Query: 61  QATKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           +A  QME  R   R+ +   S   + +SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  RAITQMEAER---RLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Lcy06g008970 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-------------ATADSPHNRVSPTGLPVVDPTELQVRAI 60
           ME   N NL+LCLSPPSSS             + + S HN ++P G+P  D TE+Q +AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVQATKQMEETRLMPRIRSEASSTSIDQLSMKSG-ASPAMRRSLQSFLQKRKHRIQTLSP 110
           IV+AT+QME  R     R    S+S +++ M+SG ASP+MRRSLQ FLQKRK RIQTLSP
Sbjct: 61  IVEATRQMEAERRWTTCR---ISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSP 120

[Close]

BLAST of Lcy06g008970 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-----------ATADSPHNRVSPTGLPVVDPTELQVRAIIV 60
           ME + N NL+LCLSPPSSS           + + S  N ++P GL   D TE+Q +AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  QATKQMEETRLMPRIRSEASSTSIDQLSMKSG-ASPAMRRSLQSFLQKRKHRIQTLSPYT 110
           QAT+QME  R   R R+   S+S +++ M +G ASP++RRSLQ FLQKRK RIQTLSPY 
Sbjct: 61  QATRQMEAER--SRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYA 119

[Close]

BLAST of Lcy06g008970 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 5   LNCNLDLCLSPP------------SSSATADSPHNRVS-PTGLPVVDPTELQVRAIIVQA 64
           L+CNL+LCLSPP            ++++T+D  H  V+   G PV D TELQ RAII+ A
Sbjct: 16  LHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAIIIGA 75

Query: 65  TKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYT 109
           T+QMEE +   R RS    +S            +M+RSLQ FLQKRKHRIQTL+PYT
Sbjct: 76  TRQMEERKTTCRTRSAEEKSS------------SMKRSLQRFLQKRKHRIQTLTPYT 120

[Close]

BLAST of Lcy06g008970 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS----------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQ 60
           ME  LNCNL+LCLSPPSSS          +T+ S HN +SPT +P++D TELQ RAIIV+
Sbjct: 1   MEPFLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPTEVPILDLTELQARAIIVR 60

Query: 61  ATKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           AT+QME  R     R    +T  +Q+SMKSGASP+MRRSLQ FLQKRKHR QTLSPYTH
Sbjct: 61  ATRQMEAERRSTTRRISLPTT--EQISMKSGASPSMRRSLQRFLQKRKHRTQTLSPYTH 117

[Close]

BLAST of Lcy06g008970 vs. NCBI nr
Match: XP_022927150.1 (protein TIFY 5A-like [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQATK 60
           ME ILNCNL+LCLSPPSSS       +T+ S HN + PT +P+ D TELQ RAIIV+AT 
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRATT 60

Query: 61  QMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  QMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 113

[Close]

BLAST of Lcy06g008970 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS---------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS         +T+ S HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEAER---RLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Lcy06g008970 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS---------ATADSPHNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS         +T+ S HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPTRVPIPDLTELQARAIIVRA 60

Query: 61  TKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGASP+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEVER---RLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYSH 115

[Close]

BLAST of Lcy06g008970 vs. NCBI nr
Match: KAG6583895.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-24
Identity = 73/118 (61.86%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   METILNCNLDLCLSPPSSS-----ATADSP----HNRVSPTGLPVVDPTELQVRAIIVQA 60
           ME ILNCNL+LCLSPPSSS     ATA+S     HN + PT +P+ D TELQ RAIIV+A
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANSMSTSCHNHIDPTRVPIPDHTELQARAIIVRA 60

Query: 61  TKQMEETRLMPRIRSEASSTSIDQLSMKSGASPAMRRSLQSFLQKRKHRIQTLSPYTH 110
           T QME  R   R+ +   S+   ++SMKSGA+P+MRRSLQ FLQKRKHRIQTLSPY+H
Sbjct: 61  TTQMEAER---RLTTCHISSPTQRVSMKSGANPSMRRSLQRFLQKRKHRIQTLSPYSH 115

The following BLAST results are available for this feature:

BLAST of Lcy06g008970 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g008970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN30	2.9e-25	62.07	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1	[more]
A0A6J1KQP6	3.0e-22	59.17	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1	[more]
A0A1S3BA64	1.2e-18	52.85	protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1	[more]
A0A0A0LX13	1.9e-16	52.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1	[more]
A0A6J1CG02	2.6e-13	47.86	protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1	[more]

BLAST of Lcy06g008970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895134.1	1.6e-25	61.34	protein TIFY 5A-like [Benincasa hispida]	[more]
XP_022927150.1	6.0e-25	62.07	protein TIFY 5A-like [Cucurbita moschata]	[more]
KAG7019513.1	1.0e-24	61.02	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023520316.1	3.0e-24	61.02	protein TIFY 5A-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583895.1	3.9e-24	61.86	Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy06g008970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 87..107 e-value: 2.6E-7 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..109
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5B	coord: 36..107
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 36..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g008970.1	Lcy06g008970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048583	regulation of response to stimulus