Lcy06g005200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g005200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Centromere protein S-like
Location	Chr06: 4813233 .. 4815697 (-)
RNA-Seq Expression	Lcy06g005200
Synteny	Lcy06g005200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTTTAAGGCCATTTCCCGTCGCCAGTGACCAGTGCCAATTCTGGAGGAAATAAAGGCGGATTGAAACAGGTGCAGTCAAAAGTAGTAAAATCTGTGTCCAGAAGGCTCTGCAATGGAAACTGGGATGGAAGAAGAAGACTCCATGTCCGAACACTTGAGGGACCGATTCCGTCTCTCCACCATTTCCATCGCTGAAGCTGAAGGTCAATTATCTTCTTATTCTCTTCATTTCCAAGCCTGTCTGGTTTTAGAATCGACAGGAGAAAGAGAAAGTATTATCCTCCGATTACTGAATTCCATGCCTGGGCGAACTTTTCATATTTGTGTTGACTTGCTCTATTTTTTAACTGTTTGGTTTGTTTTGCAGCGAATAGAAGCGGCATGGAAATCTCTGAAACTGTGATGGCTTGTGTCGCTGAGTTAGCGTTCAAATATACAAGTCAGTTTACTTCCGTTTTAGGACAGTTTTGAGACTGCAGTATCATTTTGAGCACTTGGCTTCTACTTAACTATACTCTGAAAAATATATAGATCACTGAATTGCTAATTCCACTCTTTGTTAGACTTACATTCCGCATTGTGTAGATAACCTAATTGCTAATTTTTTTAATATCCCTTCTCTTCTAGCTGTGTTTCCATCATTTTTAGGTGGTTTATATGTAGTTTCAGTTTGAAATTTCCTTATTATTTAGCATGCATTCGGTTTGTTGGGATGCCTCTCTGTGCTTTGTAGTTAAATTGTGTGAACTGTGACCTAGTTGGAAGGAAACTACATAACTTTGGTCAAGTTTAAGTCAGGAAAATAGTTGCGAGAAGAACAAATGGAGTGACTATTGTGATATCTTAGAGAATGACATTGCATGACACTTTTGGGTTCTAATCAGATGTCCTTAGAGTTCATATCAATGTTCTTTTAGAACGAGGGACAAAAAAGATCTCCTTCATTCTAACTTGAGGCTTACACCTTACAGTGTGTTAGGCCTTAACCTCATCATGCTCTTGTGGGAGCATATGCCTCAGATAGAAGAGGTGTAAGACTCTTATGAACCAAAAGTGGTGTAATCTTGAGACTTAGATTTTGTGCTTCACCTCAAGGTATACCATGGGAAGGAGAGTTCTACTTGTCTTGTGTTTCTTTGTTTATATGTCAATCTCGTAAAGAAGACATAGTTATTATTTTAATTTATATATATATATATTAGCTTCAAGTCTGTTTTCTTCTACTGATGAGTACATTTTCCATTGTCTAAAAGAAGTATATTTATACCTATATCATATTGCATGAAATTAATGTATTCTTTCATCATACGCATGAATGATTTGGTAGGTTTAAAAGGTTTCAACCAGACCTTGAGTTCATACCGTGGTGTAGGGTCATGCTTATGTTTGTAGTCATAGGGCTAACATATGAACTACAAATGGTATAATTTATGCAATGAAAACATAGTTTTGTTTACTCTGCTGCTGTAGTTGCATCTCAGGCAGCAAGGAAAGAAGATAATTCAGTCATATGTCTGTTTGATTTTTTTTATGATTCTTGAAGCGTGCAATGAGATAACGGACTGGTAACTTGTGTAGCAGAACAGTTGGCAAAAGACCTTGAGTTATTTTCTCAGCATGGTGGTCGGAAAACTGTGAATACGGAAGACGTCATACTATCAGGTTAGATTATCCGATTCCCAAGTTTGCCTGTGCTGTAATATATATGTTGATCTCAGCTCGCACTATAATTTTTTGTTTGTTTTGCTGTATTACTGTCTAGTTATATTTAGTCAATATGCAGCAACATTTTCAGAAAGTAGTACTTAATCGCTTGTAACTCTTCACTTCTGCTTCATTTTGGTCTCAGCCCATAGAAACGAGCATCTGGCTGCCTCGTTAACATTCTTCTGCAATGATCTAAAGACAAAAGAACCTCAAAGTGAGAAAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAGAGATAGAGGTGTAGTGCATATCACCGATGTCTAGTCACATCTCCCCTCTGGGCATATCTCTAGTTAACAAGGGTACATACCGATAAGTAATGACAATAGTATATGATTCTCTTCCTGATTCTAGGTTTTAGAAATCAGTAATGCCATTTTCACATTGTATGGGCCTATAGAGTATTACTCTGATTCAAAGGTTAAGCTTCTGCATCATGCAAATTCATTAAAGTGTTTCCAAACGCAGGAAATATAGCTTTTTGTTTGTTTTAGGTATTTGAGATCGTCGAAGCATGAGTTTTTCAATGTTTTTGTGATCGGGAAGCGAGTTGAAATCCTGAACAGTTGAAAAGGTTGATAAATTGTTCTTTTTGCATTTAAAACACAATTTTGTGATGTAGACTTTTAGTTAAGTGCACCACATTTTGATAATGTGAAGCATAGCGTTCATGGTGTAAATATAATAGCCTAGTTCTGACAGATATGAGAATGGGATTCGGCCCTCTCTCT

mRNA sequence

TTCGTTTAAGGCCATTTCCCGTCGCCAGTGACCAGTGCCAATTCTGGAGGAAATAAAGGCGGATTGAAACAGGTGCAGTCAAAAGTAGTAAAATCTGTGTCCAGAAGGCTCTGCAATGGAAACTGGGATGGAAGAAGAAGACTCCATGTCCGAACACTTGAGGGACCGATTCCGTCTCTCCACCATTTCCATCGCTGAAGCTGAAGCGAATAGAAGCGGCATGGAAATCTCTGAAACTGTGATGGCTTGTGTCGCTGAGTTAGCGTTCAAATATACAACAGAACAGTTGGCAAAAGACCTTGAGTTATTTTCTCAGCATGGTGGTCGGAAAACTGTGAATACGGAAGACGTCATACTATCAGCCCATAGAAACGAGCATCTGGCTGCCTCGTTAACATTCTTCTGCAATGATCTAAAGACAAAAGAACCTCAAAGTGAGAAAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAGAGATAGAGGTGTAGTGCATATCACCGATGTCTAGTCACATCTCCCCTCTGGGCATATCTCTAGTTAACAAGGGTACATACCGATAAGTAATGACAATAGTATATGATTCTCTTCCTGATTCTAGGTTTTAGAAATCAGTAATGCCATTTTCACATTGTATGGGCCTATAGAGTATTACTCTGATTCAAAGGTTAAGCTTCTGCATCATGCAAATTCATTAAAGTGTTTCCAAACGCAGGAAATATAGCTTTTTGTTTGTTTTAGGTATTTGAGATCGTCGAAGCATGAGTTTTTCAATGTTTTTGTGATCGGGAAGCGAGTTGAAATCCTGAACAGTTGAAAAGGTTGATAAATTGTTCTTTTTGCATTTAAAACACAATTTTGTGATGTAGACTTTTAGTTAAGTGCACCACATTTTGATAATGTGAAGCATAGCGTTCATGGTGTAAATATAATAGCCTAGTTCTGACAGATATGAGAATGGGATTCGGCCCTCTCTCT

Coding sequence (CDS)

ATGGAAACTGGGATGGAAGAAGAAGACTCCATGTCCGAACACTTGAGGGACCGATTCCGTCTCTCCACCATTTCCATCGCTGAAGCTGAAGCGAATAGAAGCGGCATGGAAATCTCTGAAACTGTGATGGCTTGTGTCGCTGAGTTAGCGTTCAAATATACAACAGAACAGTTGGCAAAAGACCTTGAGTTATTTTCTCAGCATGGTGGTCGGAAAACTGTGAATACGGAAGACGTCATACTATCAGCCCATAGAAACGAGCATCTGGCTGCCTCGTTAACATTCTTCTGCAATGATCTAAAGACAAAAGAACCTCAAAGTGAGAAAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAGAGATAGAGGTGTAGTGCATATCACCGATGTCTAG

Protein sequence

METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAKDLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDRDRGVVHITDV

Homology

[Close]

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot
Match: Q9FI55 (Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-33
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 7   EEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAKDLELFS 66
           EE SM + +RDRFRLS ISIAEAEA ++GMEI   V+ACVA+LAFKY  E +AKDLELF+
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKY-AENVAKDLELFA 175

Query: 67  QHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKK-APKKEDR 121
            H GRK VN +DV+LSAHRN++LAASL   CN+LK KEPQSE+KRKK + KKED+
Sbjct: 176 HHAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDK 229

[Close]

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot
Match: Q6NRI8 (Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 36/115 (31.30%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           M  G EE  S ++ L+        S+ +  A+   ++ S+  +A ++E+ F+   E  AK
Sbjct: 1   MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFR-QCESFAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKE-PQSEKKRKKA 115
           DLE+F++H  R T+N +DV L A R+  L A ++   +++      Q EKK+KK+
Sbjct: 61  DLEIFARHAKRTTINMDDVKLLARRSRSLYAHISKCSDEIAANSLEQKEKKKKKS 114

[Close]

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot
Match: Q2TBR7 (Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.4e-07
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 5   MEEED--------SMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTE 64
           MEEE+        S  + L+     +   + E  A+   M+ S+  +A ++E+ F    E
Sbjct: 1   MEEEEWSEEQQRFSYLQRLKAAVHYTVGCLCEEVASDKDMQFSKQTIAAISEVTFG-QCE 60

Query: 65  QLAKDLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPK 124
             AKDLE+F++H  R T+NTEDV L A R+  L   +T    D+   +   EKK KK  K
Sbjct: 61  NFAKDLEMFARHAKRSTINTEDVKLLARRSHSLLKYITEKNEDI--AQLNLEKKAKKKKK 120

Query: 125 KEDRDRGVV 126
            ED +R  V
Sbjct: 121 LEDENRNSV 126

[Close]

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot
Match: E1BSW7 (Centromere protein S OS=Gallus gallus OX=9031 GN=CENPS PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 4   GMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAKDLE 63
           G E+ + + + LR     +T  + +  A   G+  S+  +A ++E+ F+   E  A+DLE
Sbjct: 5   GGEQRELLIQRLRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFR-QCENFARDLE 64

Query: 64  LFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKE-PQSEKKRKKAPKKEDR 121
           +F++H  R T+ +EDV L A R+  L   +T   ++L +    Q EKK+KK+   + R
Sbjct: 65  MFARHAKRSTITSEDVKLLARRSNSLLKYITQKSDELASSNMEQKEKKKKKSSAAKGR 121

[Close]

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot
Match: Q8N2Z9 (Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 2   ETGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAKD 61
           ET  ++  S  + L+     +   + E  A    M+ S+  +A ++EL F+   E  AKD
Sbjct: 6   ETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFR-QCENFAKD 65

Query: 62  LELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKED 120
           LE+F++H  R T+NTEDV L A R+  L   +T    ++   +   E+K +K  K ED
Sbjct: 66  LEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEI--AQINLERKAQKKKKSED 120

[Close]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL
Match: A0A6J1C623 (protein MHF1 homolog OS=Momordica charantia OX=3673 GN=LOC111008732 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 110/129 (85.27%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           METG EE+D+ +E L DRFRLSTISIAEAEA R+GMEISE VM CVAELAFKYTTEQLAK
Sbjct: 1   METGREEDDTATELLSDRFRLSTISIAEAEAKRNGMEISEPVMTCVAELAFKYTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVILSAHRNEHLAASLT FCNDLKTKEPQ+E+KRKKA KKEDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILSAHRNEHLAASLTSFCNDLKTKEPQTERKRKKASKKEDR 120

Query: 121 DRGVVHITD 130
           DRGVVHI D
Sbjct: 121 DRGVVHIND 129

[Close]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL
Match: A0A5A7UM53 (Centromere protein S isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002010 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           MET MEE+DS SE LRDRFRLSTISIAEAEAN+SGMEISE VM CVA+LAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLK KEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI +
Sbjct: 121 DRGAVHIAE 129

[Close]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL
Match: A0A1S3B159 (centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           MET MEE+DS SE LRDRFRLSTISIAEAEAN+SGMEISE VM CVA+LAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLK KEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI +
Sbjct: 121 DRGAVHIAE 129

[Close]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL
Match: A0A0A0LR97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.0e-50
Identity = 108/129 (83.72%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           METGMEE+DS SE LRDRFRLS+ISIAEAEAN+SGMEISE VM CVA+LAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLKTKEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI D
Sbjct: 121 DRGAVHIAD 128

[Close]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL
Match: A0A5D3BHQ8 (Centromere protein S isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004950 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.5e-48
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           MET MEE+DS SE LRDRFRLSTISIAEAEAN+SGMEISE VM CVA+LAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKF-TKQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLK KEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI +
Sbjct: 121 DRGAVHIAE 128

[Close]

BLAST of Lcy06g005200 vs. NCBI nr
Match: XP_011652290.1 (protein MHF1 homolog isoform X1 [Cucumis sativus] >XP_011652296.1 protein MHF1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 5.3e-52
Identity = 110/129 (85.27%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           METGMEE+DS SE LRDRFRLS+ISIAEAEAN+SGMEISE VM CVA+LAFKYTTEQLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLKTKEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI D
Sbjct: 121 DRGAVHIAD 129

[Close]

BLAST of Lcy06g005200 vs. NCBI nr
Match: XP_022137214.1 (protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 2.6e-51
Identity = 110/129 (85.27%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           METG EE+D+ +E L DRFRLSTISIAEAEA R+GMEISE VM CVAELAFKYTTEQLAK
Sbjct: 1   METGREEDDTATELLSDRFRLSTISIAEAEAKRNGMEISEPVMTCVAELAFKYTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVILSAHRNEHLAASLT FCNDLKTKEPQ+E+KRKKA KKEDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILSAHRNEHLAASLTSFCNDLKTKEPQTERKRKKASKKEDR 120

Query: 121 DRGVVHITD 130
           DRGVVHI D
Sbjct: 121 DRGVVHIND 129

[Close]

BLAST of Lcy06g005200 vs. NCBI nr
Match: XP_038894698.1 (protein MHF1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 5.8e-51
Identity = 110/129 (85.27%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           M+TG+EE+ S SE LRDRFRLSTISIAEAEANRSGMEISE VM CVA+LAFKYTTEQLAK
Sbjct: 1   MKTGIEEDGSASELLRDRFRLSTISIAEAEANRSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF QH GRK+VNTEDVILSAHRNEHL+A LT  CNDLKTKEPQSE+KRKKAPKKEDR
Sbjct: 61  DLELFVQHAGRKSVNTEDVILSAHRNEHLSAILTSICNDLKTKEPQSERKRKKAPKKEDR 120

Query: 121 DRGVVHITD 130
           DRG VHI D
Sbjct: 121 DRGAVHIID 129

[Close]

BLAST of Lcy06g005200 vs. NCBI nr
Match: XP_008440142.1 (PREDICTED: centromere protein S isoform X1 [Cucumis melo] >KAA0055356.1 centromere protein S isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-50
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           MET MEE+DS SE LRDRFRLSTISIAEAEAN+SGMEISE VM CVA+LAFK+TTEQLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLK KEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI +
Sbjct: 121 DRGAVHIAE 129

[Close]

BLAST of Lcy06g005200 vs. NCBI nr
Match: XP_004154006.1 (protein MHF1 homolog isoform X2 [Cucumis sativus] >XP_004154007.1 protein MHF1 homolog isoform X2 [Cucumis sativus] >KGN64440.1 hypothetical protein Csa_013391 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 108/129 (83.72%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   METGMEEEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAK 60
           METGMEE+DS SE LRDRFRLS+ISIAEAEAN+SGMEISE VM CVA+LAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60

Query: 61  DLELFSQHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKKAPKKEDR 120
           DLELF+QH GRK+VNTEDVIL+AHRNEHLAA LT  CNDLKTKEPQSE+KRKKAPKK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DRGVVHITD 130
           DRG VHI D
Sbjct: 121 DRGAVHIAD 128

[Close]

BLAST of Lcy06g005200 vs. TAIR 10
Match: AT5G50930.1 (Histone superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-34
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 7   EEDSMSEHLRDRFRLSTISIAEAEANRSGMEISETVMACVAELAFKYTTEQLAKDLELFS 66
           EE SM + +RDRFRLS ISIAEAEA ++GMEI   V+ACVA+LAFKY  E +AKDLELF+
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKY-AENVAKDLELFA 175

Query: 67  QHGGRKTVNTEDVILSAHRNEHLAASLTFFCNDLKTKEPQSEKKRKK-APKKEDR 121
            H GRK VN +DV+LSAHRN++LAASL   CN+LK KEPQSE+KRKK + KKED+
Sbjct: 176 HHAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDK 229

The following BLAST results are available for this feature:

BLAST of Lcy06g005200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FI55	2.0e-33	67.83	Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1	[more]
Q6NRI8	3.1e-07	31.30	Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1	[more]
Q2TBR7	5.4e-07	34.11	Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1	[more]
E1BSW7	2.7e-06	30.51	Centromere protein S OS=Gallus gallus OX=9031 GN=CENPS PE=1 SV=2	[more]
Q8N2Z9	4.5e-06	32.20	Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1	[more]

BLAST of Lcy06g005200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C623	1.3e-51	85.27	protein MHF1 homolog OS=Momordica charantia OX=3673 GN=LOC111008732 PE=3 SV=1	[more]
A0A5A7UM53	2.4e-50	82.95	Centromere protein S isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3B159	2.4e-50	82.95	centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=3 SV=...	[more]
A0A0A0LR97	7.0e-50	83.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=3 SV=1	[more]
A0A5D3BHQ8	6.5e-48	81.40	Centromere protein S isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy06g005200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652290.1	5.3e-52	85.27	protein MHF1 homolog isoform X1 [Cucumis sativus] >XP_011652296.1 protein MHF1 h...	[more]
XP_022137214.1	2.6e-51	85.27	protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog ...	[more]
XP_038894698.1	5.8e-51	85.27	protein MHF1 homolog isoform X1 [Benincasa hispida]	[more]
XP_008440142.1	4.9e-50	82.95	PREDICTED: centromere protein S isoform X1 [Cucumis melo] >KAA0055356.1 centrome...	[more]
XP_004154006.1	1.4e-49	83.72	protein MHF1 homolog isoform X2 [Cucumis sativus] >XP_004154007.1 protein MHF1 h...	[more]

BLAST of Lcy06g005200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50930.1	1.4e-34	67.83	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..113 e-value: 6.7E-30 score: 105.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 33..88
IPR029003	CENP-S/Mhf1	PFAM	PF15630	CENP-S	coord: 14..89 e-value: 7.7E-18 score: 64.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..130
None	No IPR available	PANTHER	PTHR22980	CORTISTATIN	coord: 5..121
None	No IPR available	PANTHER	PTHR22980:SF0	CENTROMERE PROTEIN S	coord: 5..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g005200.1	Lcy06g005200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0031297	replication fork processing
biological_process	GO:0000712	resolution of meiotic recombination intermediates
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0043240	Fanconi anaemia nuclear complex
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046982	protein heterodimerization activity