Lcy06g004980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g004980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein transport protein Sec61 subunit gamma
Location	Chr06: 4615903 .. 4618898 (-)
RNA-Seq Expression	Lcy06g004980
Synteny	Lcy06g004980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAAGGGTATTTACGGGAATTCAAATATTGCGACAGTCCATCAATTTTGACCCAATCTTCCCTAGTCTCGCAGCGCTCAAAGTATTTCTTCCTTGATATACTCCCACACGGCCACAAACCCTTCAATCCCGAAATCAAATTTCGCGAAACAATTCGATTGTTGACGTTCCCTTCGTATCTCGGAGCAATGGATGCCGTAGATTCCGTCGTCGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTCAAGAGGTGTCACAAACCCGATCGGAAGGGTATGTTTTTTTTTTTTTTTTTTTTTTCTTGACATTGTATTGCATGGATCTGATTCAATCGAGGTCATAGATTTTTATATCCGTTTCAATTTGACTGATTCAACGTTTTGGTGGTGTAGAATTCACCAAGGTTGCCGTACGTACCGCCATCGGCTTCGTTGTGATGGGATTCGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGGTTAGATTAGGTATGCATCCAATCCAATAGATCTTATATTTTCCGCTTTGGATCTGGCTTGTATTTGTTCTGCATCGTGCTCATATTATTTATGATTTTTGCAATTATGGGACGGTTCAACGAGAAAAGGTTGCTTCGTGAAATTTTTCGTTGATAAGCTTTGCGATGGGATAATTTACTTAAGTTTTCGTTCGATCCCCGCGCATGCAATATTTACCGATTTTTTTGACATTGTATCTTCATGCACGATTGATCTAAACGATTGAAGATCATACGACTAGCATTTATGTTATATCATAATGTTCCTAATATTCAAGACGTTCTAGATGTGGATTTACGTTTTCTTTGTCCTTCTAAGATGACTTTTGGTTGCCATTGAGAGTCGTTAGGAAACATCATAGAAGCAGCATTCTGTTAGCTAACTCCTACGCTTCTATCCGTGTAGTAGTGAATTTTTCTGATTGCCGATCTTCAGATGATGTGGTTTCAATATCCAAGTCTAGTTTGTAGTTCCCCTCTCTTCTTTGTATATTAACCTATAGTGTTTTTTTTTTTTAATTTCCCTAGGTAGTTTGCTCTTGCCTTCATCTTCTTTGAAACTTAATGATCTTAATTAGCGTATTGTTTGACATGCTACTTGGAGAAACTTTTAAAAGGAATTATTTACCAAACAGCAATGATATATTTATATTATGAACCCGTTGTGGATTGTTAGCATTTTTTCTACTCGCCCGTCTCGTTATGTGCATGCACATTTAATCCTACTCATTTGAGAGCAGGTCAGAGTGAAGGAAGGAGGGCAATTGTCTCCCTTAGTTTGGTGTAAACTCAAAAAGTATACATAAAAGTACTTGAGATTTCTTAGTCTTACTCTAATCCCCCCCCCCCCCCCACCCACCCCCACCAAAAAAAAAACCTTTTAGGATTGAAAGATTATGCTTAAAAAAACATATGATGTAAACTTTTTGTTTAAGAAATTTTCTAGCCACCCCTGAGAGGTATACCATTTTTTTCCACCTTCAATTCCTCTCTGATTTACCCCTTTATTTTTTTCTTTCCATTTTCTCATATTTTTTTTTGAACCGAATCCTTGGATGCAAGGGAAGGAGTATGTCAAAGAGTCATCTTATGTCAGTTGAAAGAATAAGGTTTTTACTGTTTCTTGCTACCCTGATCCTAGTGGTATCTGATCATCATTTGGGAAAAATGTCACTAGAATCTAGCCATTCTATTGGTGTAGATAGTTTTTGAATGTTGGAGGTATGGTGATTAGATTGATGTGGAGATGGATAGTGATGGAGTGTTTAATTGTAAAGATTTTAAAGCAGAGGAGATTAATATTAGTATATGATGCCAGTAATGTGAGAATGAGATTAATATTAGTATAATATGCATTAGAATGAGAAATCTGAGAATAGACAATTAGGAATTGGATGCTGTATTTTTGAATGGCACAACGATACAATTGTGTGACCGATCTTACAGACTCGTGCTTGTGAATCAAATGCTCCCTTAGAGTATATAGTTTCTTTTTTTAAAAAAATTGAGTAAGCGGGAGTTCCTTGTGGTAAATTTAGAATCTCTTTTTATGGTTTCTGTAAATTATTTCTTTCTGGTCCATGGTTGTAATTTTAAAGGTGTAAGTTTGCATCTTTACTGCATTATTTTGGGACTTTCAATTCCTCTTAATTTGTTCAAGTTGGGTGATTGCTGATTAATTTTCCTCATATTAGATCTTCCTGTTTTCCCTCCTTCAGCGACATTCATGCATTTAGCGTTATGAAAGTGGTTGCTGGTTGTCTTATTAGAACATGTACATTCAATTCAGTGGTTAGAGACCCATGGAAGTTAGTATTCTAAAGGTGGTGTCCGTCTTTAGTTGATAATGGATTTGTATATATTTTAGTCGTATTTTTATATTGATTGATTAATATTACTTGTATTCGACATCCTTGATACATGAAAATTTGCTATGGTGTTCTAATTGATGCCTGCAAGGATTGAATGTGTACCTTTTTTTTAATACTACAACAACCCAATTTTCTTTGTTGCACCCGATTCACAATCAGTGTTGAATATCTTCAAAGCTTACAGCGTCAGTTAATTTAGACTCTAATTTTCTTTTGCCAATGGAATTTCAGGTCATGATGAAGTACGTAGTTGATGGCGGCTGGCGATCACGTTTAGTGCAACCTATGTTCACTGAGGAATACTTAGCATTTAACTGTCCTTTAGAATTTTAAAATCCGCGTGCGTAATTTGAGAAAACCCCAGGATTTGTGGAAAATTTTCTTGTCAAATTAATGAACTCACTCTCTATTTATATTTGAATGTTATAACATGTTCTTTTAGTCAAATATTCGTCTGGAAATTTGTTATTAAAAAAGCTACTGTATAGCTCTGCTGTTCTGGTGGGCGACAATAATCATGTTTATCATATCTAGTTATCTCCGTTACAAGGAGGAAGATCGATTGAATTA

mRNA sequence

ATGATTCAAGGGTATTTACGGGAATTCAAATATTGCGACAGTCCATCAATTTTGACCCAATCTTCCCTAGTCTCGCAGCGCTCAAAGTATTTCTTCCTTGATATACTCCCACACGGCCACAAACCCTTCAATCCCGAAATCAAATTTCGCGAAACAATTCGATTGTTGACGTTCCCTTCGTATCTCGGAGCAATGGATGCCGTAGATTCCGTCGTCGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTCAAGAGGTGTCACAAACCCGATCGGAAGGAATTCACCAAGGTTGCCGTACGTACCGCCATCGGCTTCGTTGTGATGGGATTCGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGGTTAGATTAGGTCATGATGAAGTACGTAGTTGATGGCGGCTGGCGATCACGTTTAGTGCAACCTATGTTCACTGAGGAATACTTAGCATTTAACTGTCCTTTAGAATTTTAAAATCCGCGTGCGTAATTTGAGAAAACCCCAGGATTTGTGGAAAATTTTCTTGTCAAATTAATGAACTCACTCTCTATTTATATTTGAATGTTATAACATGTTCTTTTAGTCAAATATTCGTCTGGAAATTTGTTATTAAAAAAGCTACTGTATAGCTCTGCTGTTCTGGTGGGCGACAATAATCATGTTTATCATATCTAGTTATCTCCGTTACAAGGAGGAAGATCGATTGAATTA

Coding sequence (CDS)

ATGATTCAAGGGTATTTACGGGAATTCAAATATTGCGACAGTCCATCAATTTTGACCCAATCTTCCCTAGTCTCGCAGCGCTCAAAGTATTTCTTCCTTGATATACTCCCACACGGCCACAAACCCTTCAATCCCGAAATCAAATTTCGCGAAACAATTCGATTGTTGACGTTCCCTTCGTATCTCGGAGCAATGGATGCCGTAGATTCCGTCGTCGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTCAAGAGGTGTCACAAACCCGATCGGAAGGAATTCACCAAGGTTGCCGTACGTACCGCCATCGGCTTCGTTGTGATGGGATTCGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGGTTAG

Protein sequence

MIQGYLREFKYCDSPSILTQSSLVSQRSKYFFLDILPHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG

Homology

[Close]

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot
Match: P38385 (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGSG 134
           INNIIVGSG
Sbjct: 61  INNIIVGSG 69

[Close]

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot
Match: P0DI74 (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGS 133
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot
Match: P0DI75 (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGS 133
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot
Match: Q9SMP2 (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 125 INNIIVGS 133
           INNIIVGS
Sbjct: 61  INNIIVGS 68

[Close]

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot
Match: Q7Z1B8 (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=213494 GN=SEC61G PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-21
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MD V   ++P R+FAKDS+RLVKRC KPDRKEF K+AV TAIGF +MGF+GFFVKLI IP
Sbjct: 1   MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60

Query: 125 INNIIVGS 133
           INNIIVGS
Sbjct: 61  INNIIVGS 68

[Close]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL
Match: A0A6J1CA50 (uncharacterized protein LOC111008832 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.9e-35
Identity = 82/97 (84.54%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 37  PHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 96
           P GH    PE K     R LTF S+LG MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE
Sbjct: 199 PQGHTSSKPETKLS---RFLTFSSHLGEMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 258

Query: 97  FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 134
           FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Sbjct: 259 FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 292

[Close]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL
Match: A0A6J1C817 (uncharacterized protein LOC111008832 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.9e-35
Identity = 82/97 (84.54%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 37  PHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 96
           P GH    PE K     R LTF S+LG MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE
Sbjct: 202 PQGHTSSKPETKLS---RFLTFSSHLGEMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 261

Query: 97  FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 134
           FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Sbjct: 262 FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 295

[Close]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL
Match: A0A453NIA0 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 59  PSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFV 118
           P+   AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA+RTAIGFVVMGFVGFFV
Sbjct: 23  PAPQPAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAIRTAIGFVVMGFVGFFV 82

Query: 119 KLIFIPINNIIVGSG 134
           KLIFIPINNIIVGSG
Sbjct: 83  KLIFIPINNIIVGSG 97

[Close]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL
Match: A0A287TRG3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.3e-29
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 64  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFI 123
           AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA+RTAIGFVVMGFVGFFVKLIFI
Sbjct: 31  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAIRTAIGFVVMGFVGFFVKLIFI 90

Query: 124 PINNIIVGSG 134
           PINNIIVGSG
Sbjct: 91  PINNIIVGSG 100

[Close]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL
Match: A0A287XTR8 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 64  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFI 123
           AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFI
Sbjct: 69  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFI 128

Query: 124 PINNIIVGSG 134
           PINNIIVGSG
Sbjct: 129 PINNIIVGSG 138

[Close]

BLAST of Lcy06g004980 vs. NCBI nr
Match: XP_022137357.1 (uncharacterized protein LOC111008832 isoform X1 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 82/97 (84.54%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 37  PHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 96
           P GH    PE K     R LTF S+LG MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE
Sbjct: 202 PQGHTSSKPETKLS---RFLTFSSHLGEMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 261

Query: 97  FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 134
           FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Sbjct: 262 FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 295

[Close]

BLAST of Lcy06g004980 vs. NCBI nr
Match: XP_022137358.1 (uncharacterized protein LOC111008832 isoform X2 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 82/97 (84.54%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 37  PHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 96
           P GH    PE K     R LTF S+LG MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE
Sbjct: 199 PQGHTSSKPETKLS---RFLTFSSHLGEMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKE 258

Query: 97  FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 134
           FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Sbjct: 259 FTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 292

[Close]

BLAST of Lcy06g004980 vs. NCBI nr
Match: KAG6584155.1 (Protein transport protein Sec61 subunit gamma, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-31
Identity = 74/98 (75.51%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 19  TQSSLVSQRSKYFFLDIL-PHGHKPFNPEIKFRETIRLLTFPSYLGAMDAVDSVVDPLRE 78
           TQ +   QRSK+FF   + PH   PF  E KFR+T  L TFP +LG MDAVDSVVDPLRE
Sbjct: 26  TQRNAKIQRSKHFFSSFIPPHAPNPFKSESKFRKTFLLSTFPLHLGEMDAVDSVVDPLRE 85

Query: 79  FAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVG 116
           FAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVG
Sbjct: 86  FAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVG 123

[Close]

BLAST of Lcy06g004980 vs. NCBI nr
Match: XP_008439824.1 (PREDICTED: protein transport protein Sec61 subunit gamma [Cucumis melo] >XP_011652190.1 protein transport protein Sec61 subunit gamma [Cucumis sativus] >XP_022924215.1 protein transport protein Sec61 subunit gamma isoform X1 [Cucurbita moschata] >XP_022955226.1 protein transport protein Sec61 subunit gamma [Cucurbita moschata] >XP_022994502.1 protein transport protein Sec61 subunit gamma [Cucurbita maxima] >XP_023000906.1 protein transport protein Sec61 subunit gamma isoform X2 [Cucurbita maxima] >XP_023519526.1 protein transport protein Sec61 subunit gamma [Cucurbita pepo subsp. pepo] >XP_023542809.1 protein transport protein Sec61 subunit gamma [Cucurbita pepo subsp. pepo] >XP_038893830.1 protein transport protein Sec61 subunit gamma [Benincasa hispida] >KAA0055337.1 protein transport protein Sec61 subunit gamma [Cucumis melo var. makuwa] >KAG7012319.1 Protein transport protein Sec61 subunit gamma [Cucurbita argyrosperma subsp. argyrosperma] >KAE8652628.1 hypothetical protein Csa_013813 [Cucumis sativus] >TYJ99263.1 protein transport protein Sec61 subunit gamma [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGSG 134
           INNIIVGSG
Sbjct: 61  INNIIVGSG 69

[Close]

BLAST of Lcy06g004980 vs. NCBI nr
Match: XP_020163946.1 (protein transport protein Sec61 subunit gamma [Aegilops tauschii subsp. strangulata] >XP_037446494.1 protein transport protein Sec61 subunit gamma-like [Triticum dicoccoides] >XP_037452624.1 protein transport protein Sec61 subunit gamma-like [Triticum dicoccoides] >XP_040248138.1 protein transport protein Sec61 subunit gamma [Aegilops tauschii subsp. strangulata] >KAE8791446.1 Protein transport protein Sec61 subunit gamma [Hordeum vulgare] >KAF7089083.1 hypothetical protein CFC21_092131 [Triticum aestivum] >VAI44557.1 unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 135.2 bits (339), Expect = 4.2e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA+RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAIRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGSG 134
           INNIIVGSG
Sbjct: 61  INNIIVGSG 69

[Close]

BLAST of Lcy06g004980 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGS 133
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Lcy06g004980 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 125 INNIIVGS 133
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Lcy06g004980 vs. TAIR 10
Match: AT3G48570.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-29
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 65  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 124
           M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 125 INNIIVGS 133
           INNIIVGS
Sbjct: 61  INNIIVGS 68

The following BLAST results are available for this feature:

BLAST of Lcy06g004980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38385	1.2e-30	98.55	Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX...	[more]
P0DI74	1.8e-29	94.12	Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0DI75	1.8e-29	94.12	Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SMP2	1.3e-27	88.24	Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q7Z1B8	1.0e-21	75.00	Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=21349...	[more]

BLAST of Lcy06g004980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CA50	4.9e-35	84.54	uncharacterized protein LOC111008832 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C817	4.9e-35	84.54	uncharacterized protein LOC111008832 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A453NIA0	3.1e-29	93.33	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S...	[more]
A0A287TRG3	5.3e-29	98.57	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A287XTR8	1.2e-28	98.57	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=2	[more]

BLAST of Lcy06g004980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137357.1	1.0e-34	84.54	uncharacterized protein LOC111008832 isoform X1 [Momordica charantia]	[more]
XP_022137358.1	1.0e-34	84.54	uncharacterized protein LOC111008832 isoform X2 [Momordica charantia]	[more]
KAG6584155.1	5.2e-31	75.51	Protein transport protein Sec61 subunit gamma, partial [Cucurbita argyrosperma s...	[more]
XP_008439824.1	3.2e-28	100.00	PREDICTED: protein transport protein Sec61 subunit gamma [Cucumis melo] >XP_0116...	[more]
XP_020163946.1	4.2e-28	98.55	protein transport protein Sec61 subunit gamma [Aegilops tauschii subsp. strangul...	[more]

BLAST of Lcy06g004980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24920.1	1.2e-30	94.12	secE/sec61-gamma protein transport protein	[more]
AT5G50460.1	1.2e-30	94.12	secE/sec61-gamma protein transport protein	[more]
AT3G48570.1	8.9e-29	88.24	secE/sec61-gamma protein transport protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023391	Protein translocase SecE domain superfamily	GENE3D	1.20.5.820	Preprotein translocase SecE subunit	coord: 71..132 e-value: 5.1E-31 score: 108.2
IPR023391	Protein translocase SecE domain superfamily	SUPERFAMILY	103456	Preprotein translocase SecE subunit	coord: 69..129
IPR008158	Protein translocase SEC61 complex, gamma subunit	TIGRFAM	TIGR00327	TIGR00327	coord: 72..130 e-value: 6.2E-16 score: 55.9
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 77..129 e-value: 7.2E-14 score: 51.4
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PROSITE	PS01067	SECE_SEC61G	coord: 78..106
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	HAMAP	MF_00422	SecE	coord: 73..128 score: 12.919514
None	No IPR available	PANTHER	PTHR12309	SEC61 GAMMA SUBUNIT	coord: 40..133
None	No IPR available	PANTHER	PTHR12309:SF24	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3	coord: 40..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g004980.1	Lcy06g004980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006605	protein targeting
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071261	Ssh1 translocon complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0008320	protein transmembrane transporter activity