Lcy06g004820 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g004820
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3-like isoform X2
LocationChr06: 4504448 .. 4506336 (-)
RNA-Seq ExpressionLcy06g004820
SyntenyLcy06g004820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCACTCGACAAGTACCCTCAGCCTGCCAACTTGTTGGAGAGCACAATACCTCTCTTGCCCTCCCTCCAACCCCTCAGGGAGAATCTGAATTCCATCGGTTTCACAAGTACTGGCTCATTGAATCAGCAAATATTTGATATGAAGGTCACTCTCTCTTTCAAGCTTTCTACATTGTGGCCTTAATACAGCTGCAAATAGTAATGATAGTTAAGTCAAATTAACAAAATGCAGCTTATATTGTCAATATATCCATACGCTTTTTCCATTGTGTTCAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGACGAATGTGGGCTTCCAGAATGACAAAGCAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTACTAGACACGATGCGGATTCGATTGTTCGGGCCTGCAAGAATTAACTCGTCCTCAAAGAAACATAAAGATGAAAGAGATCGAGTTGCAAGGACAAGGTAGAAGCCTCCATCCATTGTCCTTCCATTAATCTCTTGATGATCTCGAACTGACTGCAAGTGATATATTTGTTCATTTTTATTCTGGGTCTGTTCCGTACTTCAGTGTTCAGTAAGATTTCTTGCAGCTTCATGCTAAATTTCCTTTTCTATATTTGTACTACCAATTGCTTGGAAGTTTGATCTAAGGCTTTGAGTGCTTGGCCTCAGAGGTTGATTGATTTGAAGCCACTTTTGAAAATAGTGCTTTTAAGTTTGGTCATTCTAAACATTACATTAAAAGCGCTCCTACTATTCTAAAGTTAAACTAAATTGAAAATAGTCTAGCTCGACCACGTCTCTAAGGTTATTTTGGAACTTTTTTTTTAGAAGTATTTTGGATTTTTTTTTAAATAGTATTTTGGAACTTCTTTAATAATTAAGTATGGTTTTAATACCATGTTTCATTATATTACAAATCACAAGTAATCAACTTCTGTGGAAGAAATTGTAGTTTTCTTTTCTTTCTTTTTCTTAGTTCAGCTTCCGCTATTAACGTGGTAAGGAGAGGACACTTTTGTTTTGTATATATATATATCACACACATATTTCTGGTTTTTTTTTTTTTTTGAAAAATATATTTATGGATATTTCTACCTTCTAACGTTTAACATAATCTTCTAAAGTCTAAATTGCTAACATGAGCATAAGTTAACTGGCATAAAAGCTTATACTAACGACTCAAAGATGTGTGGTTCAAATTCTCCACCCCACATATTGTACTAAAAAAACATAATCTTCTAAATATGTATAATATTACCAGGAGATCTTTAAAATGTTTCACATTTTGAATATAATTCAATCAGTTAAGGTTAAAAACTCATATGAGAATCAAAATGACTTAAAATAAGACATTTTAAGATGCACAACATCCTAACATACTCGAGGATTTTTGTATTACCATGAGAATCTAGATGTACTAAGGTGAGAAAAAGGTGAGCATCTTAGATTGTGTGATTTTCAACTATTTTTTTGAAATGGGTGTCAACTATTTTTTTGAAATGGGTGTTTGGTAACAAATAAAAATTACGTTTGAAATAATTAAGTTAGTTTAAAATCATTTTTTGAACCATCGCTTTAAATTTGATTTTTCAAAAAGTGATTTTTTTTTTGAAATAAAAAATTCATTAATGACTAACCAACACCACAACCACCCTCATAAAGAAGAGGGAAAACAAAATCAGGAAGTTCTGGAGCCCAAAAAACACGCTCCATATCGAGATTCAGGAAAGGTCTCTGATTACAACCAAAATCGAAATCAATTGCCTTTCTCGCCACTAAGTGTGCTAATCGATTTCCTTCTCTGCTACAATGAAGGAAAGCGATGGATTTGAAACACAAGGAGAGAGCCTGA

mRNA sequence

ATGTCCTCACTCGACAAGTACCCTCAGCCTGCCAACTTGTTGGAGAGCACAATACCTCTCTTGCCCTCCCTCCAACCCCTCAGGGAGAATCTGAATTCCATCGGTTTCACAAGTACTGGCTCATTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGACGAATGTGGGCTTCCAGAATGACAAAGCAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTACTAGACACGATGCGGATTCGATTGTTCGGGCCTGCAAGAATTAACTCGTCCTCAAAGAAACATAAAGATGAAAGAGATCGAGTTGCAAGGACAAGGAAAGCGATGGATTTGAAACACAAGGAGAGAGCCTGA

Coding sequence (CDS)

ATGTCCTCACTCGACAAGTACCCTCAGCCTGCCAACTTGTTGGAGAGCACAATACCTCTCTTGCCCTCCCTCCAACCCCTCAGGGAGAATCTGAATTCCATCGGTTTCACAAGTACTGGCTCATTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGACGAATGTGGGCTTCCAGAATGACAAAGCAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTACTAGACACGATGCGGATTCGATTGTTCGGGCCTGCAAGAATTAACTCGTCCTCAAAGAAACATAAAGATGAAAGAGATCGAGTTGCAAGGACAAGGAAAGCGATGGATTTGAAACACAAGGAGAGAGCCTGA

Protein sequence

MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQMKVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVARTRKAMDLKHKERA
Homology
[Close]
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match: A0A5D3BJZ3 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004600 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.7e-48
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 344 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 403

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 404 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 463

[Close]
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match: A0A5A7UJJ9 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001670 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.7e-48
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 344 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 403

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 404 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 463

[Close]
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match: A0A1S4DU54 (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.7e-48
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 341 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 400

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 401 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 460

[Close]
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match: A0A1S4DUX3 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.7e-48
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 434 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 493

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 494 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 553

[Close]
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match: A0A1S4DU43 (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.7e-48
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 361 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 420

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 421 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 480

[Close]
BLAST of Lcy06g004820 vs. NCBI nr
Match: XP_038894085.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANLL+STIPL PSLQPLRENLNSIGFTSTGSLNQQI D KTEGTSAAIQM
Sbjct: 344 MSSLDKYPQPANLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQM 403

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERR+WAS+MTKQVM+MNNHLQSRLLD MRIRLFGP +I+SSSKK KDERDRVAR
Sbjct: 404 KVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSSKKRKDERDRVAR 463

Query: 121 TRKAMDL 128
           TR+   L
Sbjct: 464 TREKRPL 470

[Close]
BLAST of Lcy06g004820 vs. NCBI nr
Match: XP_038894086.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANLL+STIPL PSLQPLRENLNSIGFTSTGSLNQQI D KTEGTSAAIQM
Sbjct: 286 MSSLDKYPQPANLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQM 345

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERR+WAS+MTKQVM+MNNHLQSRLLD MRIRLFGP +I+SSSKK KDERDRVAR
Sbjct: 346 KVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSSKKRKDERDRVAR 405

Query: 121 TRKAMDL 128
           TR+   L
Sbjct: 406 TREKRPL 412

[Close]
BLAST of Lcy06g004820 vs. NCBI nr
Match: XP_016899511.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 361 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 420

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 421 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 480

[Close]
BLAST of Lcy06g004820 vs. NCBI nr
Match: KAA0055324.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 344 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 403

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 404 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 463

[Close]
BLAST of Lcy06g004820 vs. NCBI nr
Match: XP_016899510.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MSSLDKYPQPANLLESTIPLLPSLQPLRENLNSIGFTSTGSLNQQIFDMKTEGTSAAIQM 60
           MSSLDKYPQPANL++STIPL  SLQPL+ENLNSIGFTST SLNQQI DMKTEGTSAAIQM
Sbjct: 434 MSSLDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQM 493

Query: 61  KVETNLERRMWASRMTKQVMEMNNHLQSRLLDTMRIRLFGPARINSSSKKHKDERDRVAR 120
           KVET+LERRMWASRMTKQVM+MNNHLQSR+LD MRIRLF P +INSSSKK KDERDRVA+
Sbjct: 494 KVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAK 553

The following BLAST results are available for this feature:
BLAST of Lcy06g004820 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g004820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJZ36.7e-4886.67Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ... [more]
A0A5A7UJJ96.7e-4886.67Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ... [more]
A0A1S4DU546.7e-4886.67protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L... [more]
A0A1S4DUX36.7e-4886.67protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L... [more]
A0A1S4DU436.7e-4886.67protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L... [more]
BLAST of Lcy06g004820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894085.11.3e-5086.61protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Benincasa hispida][more]
XP_038894086.11.3e-5086.61protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Benincasa hispida][more]
XP_016899511.11.4e-4786.67PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo][more]
KAA0055324.11.4e-4786.67protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo var. makuwa][more]
XP_016899510.11.4e-4786.67PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo][more]
BLAST of Lcy06g004820 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..133
NoneNo IPR availablePANTHERPTHR18763WD-REPEAT PROTEIN 18coord: 1..117
NoneNo IPR availablePANTHERPTHR18763:SF4PROTEIN ROOT INITIATION DEFECTIVE 3-LIKEcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g004820.1Lcy06g004820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030174 regulation of DNA-dependent DNA replication initiation
biological_process GO:0006364 rRNA processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005656 nuclear pre-replicative complex
cellular_component GO:0097344 Rix1 complex