Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGTAGCATTTGATATGATTATTTCTGTTTCTATCTCTCACAGGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA
mRNA sequence
ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA
Coding sequence (CDS)
ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA
Protein sequence
MEVVHTEFEPFPSITYLGLLDIFQAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQVHEILFSGSSSTLQSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQWETSNDATPLSTAD
Homology
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match:
A0A6J1K4C9 (uncharacterized protein LOC111489977 OS=Cucurbita maxima OX=3661 GN=LOC111489977 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 4.6e-43
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318
Query: 84 EILFSGSSSTLQ------------------------------------------------ 143
F + ST Q
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378
Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPAAS+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAASK 438
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match:
A0A0A0LUB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050260 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 112/205 (54.63%), Postives = 120/205 (58.54%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ------------------------- 83
+AKQ NG VVDNGLYEAMRKELR+AVEEIRVELEQ
Sbjct: 259 KAKQANGGVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLLSSDSGVRH 318
Query: 84 ----------------------------------------------VHEILFSGSSST-L 143
+ ++ SS T
Sbjct: 319 HTSPFTRNYSAKQEQPEKRRDSLGKMVMEKQRGQDLAKMVKNLPPDLKNVVADNSSRTRK 378
Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
+SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAAS
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKVKPNFKIPAAS 438
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match:
A0A6J1GUF6 (uncharacterized protein LOC111457034 OS=Cucurbita moschata OX=3662 GN=LOC111457034 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------VHEILFSGSS---- 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ + + L S S
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQR 318
Query: 84 --------STLQ------------------------------------------------ 143
ST Q
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378
Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match:
A0A5D3BJY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004500 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 110/205 (53.66%), Postives = 119/205 (58.05%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ---------------VHE------- 83
+AKQ NG VVD+GLYEAMRKELR+AVEEIRVELEQ +H
Sbjct: 259 KAKQANGGVVDDGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLHSSDSGVCH 318
Query: 84 --------------------------------------------------ILFSGSSSTL 143
+ + S S
Sbjct: 319 HTSPFTRNYSAKQEQSEKRRDSLGKMVMEKQRGQDLPKMVKNLPPDLKNVVADNSSRSRK 378
Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
+SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAA
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKAKPNFKIPAAR 438
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match:
E5GBV7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 110/205 (53.66%), Postives = 119/205 (58.05%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ---------------VHE------- 83
+AKQ NG VVD+GLYEAMRKELR+AVEEIRVELEQ +H
Sbjct: 259 KAKQANGGVVDDGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLHSSDSGVCH 318
Query: 84 --------------------------------------------------ILFSGSSSTL 143
+ + S S
Sbjct: 319 HTSPFTRNYSAKQEQSEKRRDSLGKMVMEKQRGQDLPKMVKNLPPDLKNVVADNSSRSRK 378
Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
+SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAA
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKAKPNFKIPAAR 438
BLAST of Lcy06g004720 vs. NCBI nr
Match:
KAG7012300.1 (hypothetical protein SDJN02_25052 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 194.1 bits (492), Expect = 9.1e-46
Identity = 110/165 (66.67%), Postives = 118/165 (71.52%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQVHEILFSGSSSTLQ----------- 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ + S + LQ
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQSDKRRDSLAKMVLQEQRAQELPKTV 318
Query: 84 ---------------------SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRS 143
S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRS
Sbjct: 319 KNSSPDLTNVVAENSSRIRKRSNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRS 378
Query: 144 DTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQWETSNDATP 157
DTSSSLGGKTKPNF+IPA S+ V PGM+GVLLPW QWETSNDATP
Sbjct: 379 DTSSSLGGKTKPNFEIPAPSKTVPPGMDGVLLPWLQWETSNDATP 423
BLAST of Lcy06g004720 vs. NCBI nr
Match:
XP_022994153.1 (uncharacterized protein LOC111489977 [Cucurbita maxima])
HSP 1 Score: 184.1 bits (466), Expect = 9.5e-43
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318
Query: 84 EILFSGSSSTLQ------------------------------------------------ 143
F + ST Q
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378
Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPAAS+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAASK 438
BLAST of Lcy06g004720 vs. NCBI nr
Match:
XP_004152590.1 (uncharacterized protein LOC101211551 [Cucumis sativus] >KGN64387.1 hypothetical protein Csa_014226 [Cucumis sativus])
HSP 1 Score: 182.6 bits (462), Expect = 2.7e-42
Identity = 112/205 (54.63%), Postives = 120/205 (58.54%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ------------------------- 83
+AKQ NG VVDNGLYEAMRKELR+AVEEIRVELEQ
Sbjct: 259 KAKQANGGVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLLSSDSGVRH 318
Query: 84 ----------------------------------------------VHEILFSGSSST-L 143
+ ++ SS T
Sbjct: 319 HTSPFTRNYSAKQEQPEKRRDSLGKMVMEKQRGQDLAKMVKNLPPDLKNVVADNSSRTRK 378
Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
+SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAAS
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKVKPNFKIPAAS 438
BLAST of Lcy06g004720 vs. NCBI nr
Match:
XP_023542617.1 (uncharacterized protein LOC111802468 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 111/204 (54.41%), Postives = 119/204 (58.33%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318
Query: 84 EILFSGSSSTLQ------------------------------------------------ 143
F + ST Q
Sbjct: 319 SSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378
Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
S DRSRM KRL+EEAEKYIED+ISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDYISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438
BLAST of Lcy06g004720 vs. NCBI nr
Match:
XP_022954924.1 (uncharacterized protein LOC111457034 [Cucurbita moschata])
HSP 1 Score: 179.5 bits (454), Expect = 2.3e-41
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0
Query: 24 QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------VHEILFSGSS---- 83
+AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ + + L S S
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQR 318
Query: 84 --------STLQ------------------------------------------------ 143
ST Q
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378
Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438
BLAST of Lcy06g004720 vs. TAIR 10
Match:
AT5G50350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 75.5 bits (184), Expect = 4.4e-14
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 37 LYEAMRKELRNAVEEIRVELEQVHEILFSGSS--------STLQSKDRS-RMYKRLSEEA 96
L E M +E R E+ V L+ EIL SS + +SKDRS RM L++EA
Sbjct: 362 LAEIMLEEQRG--RELSVNLK---EILTENSSEAEEKPLRTRKRSKDRSRRMSMCLTDEA 421
Query: 97 EKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQ 151
E++I++FISN+EDTD SSL+ +RS++SSS G + + +A + M+GV+LPW Q
Sbjct: 422 EQFIDEFISNIEDTDFSSLEDERSESSSSFGMIKTQSSQSTSALKSTSVEMDGVMLPWLQ 479
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1K4C9 | 4.6e-43 | 55.39 | uncharacterized protein LOC111489977 OS=Cucurbita maxima OX=3661 GN=LOC111489977... | [more] |
A0A0A0LUB4 | 1.3e-42 | 54.63 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050260 PE=4 SV=1 | [more] |
A0A6J1GUF6 | 1.1e-41 | 55.39 | uncharacterized protein LOC111457034 OS=Cucurbita moschata OX=3662 GN=LOC1114570... | [more] |
A0A5D3BJY3 | 1.5e-41 | 53.66 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GBV7 | 1.5e-41 | 53.66 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG7012300.1 | 9.1e-46 | 66.67 | hypothetical protein SDJN02_25052 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022994153.1 | 9.5e-43 | 55.39 | uncharacterized protein LOC111489977 [Cucurbita maxima] | [more] |
XP_004152590.1 | 2.7e-42 | 54.63 | uncharacterized protein LOC101211551 [Cucumis sativus] >KGN64387.1 hypothetical ... | [more] |
XP_023542617.1 | 1.4e-41 | 54.41 | uncharacterized protein LOC111802468 [Cucurbita pepo subsp. pepo] | [more] |
XP_022954924.1 | 2.3e-41 | 55.39 | uncharacterized protein LOC111457034 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
AT5G50350.1 | 4.4e-14 | 43.09 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... | [more] |