Lcy06g004720 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g004720
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGp_dh_N domain-containing protein
LocationChr06: 4355419 .. 4355945 (+)
RNA-Seq ExpressionLcy06g004720
SyntenyLcy06g004720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGTAGCATTTGATATGATTATTTCTGTTTCTATCTCTCACAGGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA

mRNA sequence

ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA

Coding sequence (CDS)

ATGGAAGTTGTACACACCGAATTTGAACCTTTTCCATCCATTACATATCTGGGTTTACTTGATATCTTTCAAGCAAAGCAGCTCAACGGGGATGTTGTTGACAATGGCTTGTATGAAGCAATGCGGAAAGAACTTAGAAATGCTGTGGAAGAGATAAGGGTGGAACTTGAGCAGGTACATGAGATCCTTTTCAGTGGTTCTAGTTCTACTCTGCAGAGCAAGGATCGAAGTAGGATGTATAAAAGATTGAGTGAGGAGGCAGAAAAATACATCGAGGACTTCATTTCCAATGTTGAAGATACAGATATTTCATCTCTTGATGGCGATAGGAGTGACACAAGTTCGTCTTTAGGAGGAAAAACAAAACCAAATTTCAAAATTCCAGCAGCCAGCAGACATGTTCTTCCTGGAATGAATGGTGTCCTGCTTCCATGGTTTCAATGGGAAACCAGTAATGATGCTACTCCTTTGTCAACTGCCGATTGA

Protein sequence

MEVVHTEFEPFPSITYLGLLDIFQAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQVHEILFSGSSSTLQSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQWETSNDATPLSTAD
Homology
BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match: A0A6J1K4C9 (uncharacterized protein LOC111489977 OS=Cucurbita maxima OX=3661 GN=LOC111489977 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.6e-43
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ                        H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318

Query: 84  EILFSGSSSTLQ------------------------------------------------ 143
              F  + ST Q                                                
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378

Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
           S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPAAS+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAASK 438

BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match: A0A0A0LUB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050260 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 112/205 (54.63%), Postives = 120/205 (58.54%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ------------------------- 83
           +AKQ NG VVDNGLYEAMRKELR+AVEEIRVELEQ                         
Sbjct: 259 KAKQANGGVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLLSSDSGVRH 318

Query: 84  ----------------------------------------------VHEILFSGSSST-L 143
                                                         +  ++   SS T  
Sbjct: 319 HTSPFTRNYSAKQEQPEKRRDSLGKMVMEKQRGQDLAKMVKNLPPDLKNVVADNSSRTRK 378

Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
           +SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAAS
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKVKPNFKIPAAS 438

BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match: A0A6J1GUF6 (uncharacterized protein LOC111457034 OS=Cucurbita moschata OX=3662 GN=LOC111457034 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------VHEILFSGSS---- 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ           + + L S  S    
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQR 318

Query: 84  --------STLQ------------------------------------------------ 143
                   ST Q                                                
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378

Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
           S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438

BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match: A0A5D3BJY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004500 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 110/205 (53.66%), Postives = 119/205 (58.05%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ---------------VHE------- 83
           +AKQ NG VVD+GLYEAMRKELR+AVEEIRVELEQ               +H        
Sbjct: 259 KAKQANGGVVDDGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLHSSDSGVCH 318

Query: 84  --------------------------------------------------ILFSGSSSTL 143
                                                             +  + S S  
Sbjct: 319 HTSPFTRNYSAKQEQSEKRRDSLGKMVMEKQRGQDLPKMVKNLPPDLKNVVADNSSRSRK 378

Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
           +SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAA 
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKAKPNFKIPAAR 438

BLAST of Lcy06g004720 vs. ExPASy TrEMBL
Match: E5GBV7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 110/205 (53.66%), Postives = 119/205 (58.05%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ---------------VHE------- 83
           +AKQ NG VVD+GLYEAMRKELR+AVEEIRVELEQ               +H        
Sbjct: 259 KAKQANGGVVDDGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLHSSDSGVCH 318

Query: 84  --------------------------------------------------ILFSGSSSTL 143
                                                             +  + S S  
Sbjct: 319 HTSPFTRNYSAKQEQSEKRRDSLGKMVMEKQRGQDLPKMVKNLPPDLKNVVADNSSRSRK 378

Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
           +SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAA 
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKAKPNFKIPAAR 438

BLAST of Lcy06g004720 vs. NCBI nr
Match: KAG7012300.1 (hypothetical protein SDJN02_25052 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 9.1e-46
Identity = 110/165 (66.67%), Postives = 118/165 (71.52%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQVHEILFSGSSSTLQ----------- 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ  +   S +   LQ           
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQSDKRRDSLAKMVLQEQRAQELPKTV 318

Query: 84  ---------------------SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRS 143
                                S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRS
Sbjct: 319 KNSSPDLTNVVAENSSRIRKRSNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRS 378

Query: 144 DTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQWETSNDATP 157
           DTSSSLGGKTKPNF+IPA S+ V PGM+GVLLPW QWETSNDATP
Sbjct: 379 DTSSSLGGKTKPNFEIPAPSKTVPPGMDGVLLPWLQWETSNDATP 423

BLAST of Lcy06g004720 vs. NCBI nr
Match: XP_022994153.1 (uncharacterized protein LOC111489977 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 9.5e-43
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ                        H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318

Query: 84  EILFSGSSSTLQ------------------------------------------------ 143
              F  + ST Q                                                
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378

Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
           S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPAAS+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAASK 438

BLAST of Lcy06g004720 vs. NCBI nr
Match: XP_004152590.1 (uncharacterized protein LOC101211551 [Cucumis sativus] >KGN64387.1 hypothetical protein Csa_014226 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-42
Identity = 112/205 (54.63%), Postives = 120/205 (58.54%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ------------------------- 83
           +AKQ NG VVDNGLYEAMRKELR+AVEEIRVELEQ                         
Sbjct: 259 KAKQANGGVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVETFSDDLLSSDSGVRH 318

Query: 84  ----------------------------------------------VHEILFSGSSST-L 143
                                                         +  ++   SS T  
Sbjct: 319 HTSPFTRNYSAKQEQPEKRRDSLGKMVMEKQRGQDLAKMVKNLPPDLKNVVADNSSRTRK 378

Query: 144 QSKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAAS 157
           +SKDRSRM KRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGK KPNFKIPAAS
Sbjct: 379 RSKDRSRMSKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKVKPNFKIPAAS 438

BLAST of Lcy06g004720 vs. NCBI nr
Match: XP_023542617.1 (uncharacterized protein LOC111802468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 111/204 (54.41%), Postives = 119/204 (58.33%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------------------VH 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ                        H
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQH 318

Query: 84  EILFSGSSSTLQ------------------------------------------------ 143
              F  + ST Q                                                
Sbjct: 319 SSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378

Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
           S DRSRM KRL+EEAEKYIED+ISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDYISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438

BLAST of Lcy06g004720 vs. NCBI nr
Match: XP_022954924.1 (uncharacterized protein LOC111457034 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-41
Identity = 113/204 (55.39%), Postives = 121/204 (59.31%), Query Frame = 0

Query: 24  QAKQLNGDVVDNGLYEAMRKELRNAVEEIRVELEQ-----------VHEILFSGSS---- 83
           +AKQLNGDVVDNGLYEAMRKELR+AVEEIRVELEQ           + + L S  S    
Sbjct: 259 KAKQLNGDVVDNGLYEAMRKELRHAVEEIRVELEQEMVNRNSSVGTLSDDLHSSDSGVQR 318

Query: 84  --------STLQ------------------------------------------------ 143
                   ST Q                                                
Sbjct: 319 TSPFKRNYSTKQEQSDKRRDSLAKMVLQEQRAQELPKTVKNSSPDLTNVVAENSSRIRKR 378

Query: 144 SKDRSRMYKRLSEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASR 157
           S DRSRM KRL+EEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNF+IPA S+
Sbjct: 379 SNDRSRMSKRLTEEAEKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFEIPAPSK 438

BLAST of Lcy06g004720 vs. TAIR 10
Match: AT5G50350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-14
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 37  LYEAMRKELRNAVEEIRVELEQVHEILFSGSS--------STLQSKDRS-RMYKRLSEEA 96
           L E M +E R    E+ V L+   EIL   SS        +  +SKDRS RM   L++EA
Sbjct: 362 LAEIMLEEQRG--RELSVNLK---EILTENSSEAEEKPLRTRKRSKDRSRRMSMCLTDEA 421

Query: 97  EKYIEDFISNVEDTDISSLDGDRSDTSSSLGGKTKPNFKIPAASRHVLPGMNGVLLPWFQ 151
           E++I++FISN+EDTD SSL+ +RS++SSS G     + +  +A +     M+GV+LPW Q
Sbjct: 422 EQFIDEFISNIEDTDFSSLEDERSESSSSFGMIKTQSSQSTSALKSTSVEMDGVMLPWLQ 479

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K4C94.6e-4355.39uncharacterized protein LOC111489977 OS=Cucurbita maxima OX=3661 GN=LOC111489977... [more]
A0A0A0LUB41.3e-4254.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050260 PE=4 SV=1[more]
A0A6J1GUF61.1e-4155.39uncharacterized protein LOC111457034 OS=Cucurbita moschata OX=3662 GN=LOC1114570... [more]
A0A5D3BJY31.5e-4153.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GBV71.5e-4153.66Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7012300.19.1e-4666.67hypothetical protein SDJN02_25052 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022994153.19.5e-4355.39uncharacterized protein LOC111489977 [Cucurbita maxima][more]
XP_004152590.12.7e-4254.63uncharacterized protein LOC101211551 [Cucumis sativus] >KGN64387.1 hypothetical ... [more]
XP_023542617.11.4e-4154.41uncharacterized protein LOC111802468 [Cucurbita pepo subsp. pepo][more]
XP_022954924.12.3e-4155.39uncharacterized protein LOC111457034 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G50350.14.4e-1443.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..62
NoneNo IPR availablePANTHERPTHR34466OS11G0129800 PROTEINcoord: 26..60
NoneNo IPR availablePANTHERPTHR34466:SF1BNAC03G27780D PROTEINcoord: 26..60
NoneNo IPR availablePANTHERPTHR34466:SF1BNAC03G27780D PROTEINcoord: 72..158
NoneNo IPR availablePANTHERPTHR34466OS11G0129800 PROTEINcoord: 72..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g004720.1Lcy06g004720.1mRNA