Lcy06g003150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g003150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein PXR1
Location	Chr06: 2964369 .. 2965073 (+)
RNA-Seq Expression	Lcy06g003150
Synteny	Lcy06g003150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAAGGAAATTACCAAGTCTTGTGGCTGAATTCTCGGCAACCCACATCAATTTCTGGCCATTGGGTTGCCATATTTATGTAGACGAGTTGCAGACCAATAATTGCACAACAATTTATTCAGTTTGCCTTCAATTCTGTCACAAAAGAGCAACTGCCGATACAACCTCTCTGCAATTTCAGGTTTTCTTTCTCTTCACCATTGCAATAGCTGAATTGAATTGTCCCATTTTCATACTTGAATGTGATTTACTTTCACTTTTTGCTCGAATTGTCATCAGCTTTTATGTCAAAAGCACTCATCTCTGACTCTCCCATGAATGATAATACTGTCAATCTTTCTTTATATGAAGAATGTGGATCTTTTTTCTTTGCTTTTTATATCCAATAAGGGAGAAATGTTTAAGAACAGATTAGAATTGTTGGGATCTTCAGATAAACATAATGGGAGAGACGTCAGAAGAGAAGCACGAGGATAAGGTTGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCACGAAGGAGGAGAAGATGAGAAAAAGAAGGAAAAGAAGAAGAAGGATCCTGCGGATAAGAAAGACCCAACAAAACTCAGACAGAAGCTGGAGAAGCTTGAAACCAAAATGCAGGCTTTGGCTGTGAAGAAAGAAGAGGTCTTGAAACTGCTCCATGAAGCTGAACAGAATGCTCCTCCTTCCTCTTGA

mRNA sequence

ATGGAAAAAAGGAAATTACCAAGTCTTGTGGCTGAATTCTCGGCAACCCACATCAATTTCTGGCCATTGGGTTGCCATATTTATGTAGACGAGTTGCAGACCAATAATTGCACAACAATTTATTCAGTTTGCCTTCAATTCTGTCACAAAAGAGCAACTGCCGATACAACCTCTCTGCAATTTCAGATAAACATAATGGGAGAGACGTCAGAAGAGAAGCACGAGGATAAGGTTGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCACGAAGGAGGAGAAGATGAGAAAAAGAAGGAAAAGAAGAAGAAGGATCCTGCGGATAAGAAAGACCCAACAAAACTCAGACAGAAGCTGGAGAAGCTTGAAACCAAAATGCAGGCTTTGGCTGTGAAGAAAGAAGAGGTCTTGAAACTGCTCCATGAAGCTGAACAGAATGCTCCTCCTTCCTCTTGA

Coding sequence (CDS)

ATGGAAAAAAGGAAATTACCAAGTCTTGTGGCTGAATTCTCGGCAACCCACATCAATTTCTGGCCATTGGGTTGCCATATTTATGTAGACGAGTTGCAGACCAATAATTGCACAACAATTTATTCAGTTTGCCTTCAATTCTGTCACAAAAGAGCAACTGCCGATACAACCTCTCTGCAATTTCAGATAAACATAATGGGAGAGACGTCAGAAGAGAAGCACGAGGATAAGGTTGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCACGAAGGAGGAGAAGATGAGAAAAAGAAGGAAAAGAAGAAGAAGGATCCTGCGGATAAGAAAGACCCAACAAAACTCAGACAGAAGCTGGAGAAGCTTGAAACCAAAATGCAGGCTTTGGCTGTGAAGAAAGAAGAGGTCTTGAAACTGCTCCATGAAGCTGAACAGAATGCTCCTCCTTCCTCTTGA

Protein sequence

MEKRKLPSLVAEFSATHINFWPLGCHIYVDELQTNNCTTIYSVCLQFCHKRATADTTSLQFQINIMGETSEEKHEDKVEKKEKKDKEKHEGGEDEKKKEKKKKDPADKKDPTKLRQKLEKLETKMQALAVKKEEVLKLLHEAEQNAPPSS

Homology

[Close]

BLAST of Lcy06g003150 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-23
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 66  MGETSEEKHEDKVEKKEKKDKEKH-EGGEDEKKKEKKKKDPADKKDPTKLRQKLEKLETK 125
           MGETSEEKHE KVEKKEKKDKEKH EG ++EKKK+KK+K+PADKKDPTKLRQKLEKLE K
Sbjct: 1   MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60

Query: 126 MQALAVKKEEVLKLLHEAEQNAPPSS 151
           MQALAVKKEE+LKLLHEAEQN PP S
Sbjct: 61  MQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of Lcy06g003150 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 66  MGETSEEKHE---DKVEKKEKKDKEKH-EGGEDE--KKKEKKKKDPADKKDPTKLRQKLE 125
           MGETSEEKHE   +K EKKEKKDKEKH E GEDE  KKK+KK+KDPADKKDPTKLRQKLE
Sbjct: 1   MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60

Query: 126 KLETKMQALAVKKEEVLKLLHEAEQNAPPSS 151
           KLE KMQALAVKKEE+LKLLHEAEQN PPSS
Sbjct: 61  KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 91

[Close]

BLAST of Lcy06g003150 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 80/134 (59.70%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 32  LQTNNCTTIYSVCLQFCHKRATADTTSLQFQINIMGETSEEKHEDKVEKKE-KKDKEKHE 91
           L  NNC TI+   +QF        T         MG TSEEKHE KVEKKE KKDKEKHE
Sbjct: 5   LTPNNCRTIF---IQFSFNSGLDST---------MGGTSEEKHEGKVEKKEKKKDKEKHE 64

Query: 92  GGEDE----------------KKKEKKKKDPADKKDPTKLRQKLEKLETKMQALAVKKEE 149
             ED+                +KKEKKKKDPAD KDP KLRQKLEKLE KMQALAVKKEE
Sbjct: 65  EEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPADMKDPLKLRQKLEKLEDKMQALAVKKEE 124

[Close]

BLAST of Lcy06g003150 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 72/102 (70.59%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 66  MGETSEEKHEDKVEK-------------KEKKDKEKHEGGEDEKKKEKKKKDPADKKDPT 125
           MG  SEEKHEDKVEK             KEKK K+K + G++ +KKEKK KDPADKKDPT
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKEKKPKDPADKKDPT 60

Query: 126 KLRQKLEKLETKMQALAVKKEEVLKLLHEAEQNA----PPSS 151
           KLRQKLEKLE KMQALAVKKEEVLKLLHEAEQNA    PPSS
Sbjct: 61  KLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPSS 102

[Close]

BLAST of Lcy06g003150 vs. ExPASy TrEMBL
Match: A0A6J1C8D9 (nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 75/100 (75.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 66  MGETSEEKHE----DKVEKKEKKDKEKH---EGGEDEK---KKEKKKKDPADKKDPTKLR 125
           MGE SEEKHE    +K EKKEKKDKEKH   EGGE EK   KKEKKKK+P DKKDPTKLR
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKKKNPEDKKDPTKLR 69

Query: 126 QKLEKLETKMQALAVKKEEVLKLLHEAEQNA-----PPSS 151
           QKLEKLETKM+ LA+KKEEVLKLL EAEQNA     PPSS
Sbjct: 70  QKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of Lcy06g003150 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-22
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 66  MGETSEEKHEDKVEKKEKKDKEKH-EGGEDEKKKEKKKKDPADKKDPTKLRQKLEKLETK 125
           MGETSEEKHE KVEKKEKKDKEKH EG ++EKKK+KK+K+PADKKDPTKLRQKLEKLE K
Sbjct: 1   MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60

Query: 126 MQALAVKKEEVLKLLHEAEQNAPPSS 151
           MQALAVKKEE+LKLLHEAEQN PP S
Sbjct: 61  MQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of Lcy06g003150 vs. NCBI nr
Match: KAG7012203.1 (Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 62   QINIMGETSEEKHEDKVEKKEKK------DKEKHEGGEDEKKKEKKKKDPADKKDPTKLR 121
            ++NIMG  SEEKHEDKVEKKEKK      +K+K + G+D +KKEKK KDPADKKDPTKLR
Sbjct: 1114 KLNIMGGNSEEKHEDKVEKKEKKHEEEGDEKKKEKKGKDGEKKEKKPKDPADKKDPTKLR 1173

Query: 122  QKLEKLETKMQALAVKKEEVLKLLHEAEQNA 147
            QKLEKLE KMQALAVKKEE+LKLLHEAEQNA
Sbjct: 1174 QKLEKLEVKMQALAVKKEEILKLLHEAEQNA 1204

[Close]

BLAST of Lcy06g003150 vs. NCBI nr
Match: XP_022923831.1 (protein PXR1 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-18
Identity = 80/134 (59.70%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 32  LQTNNCTTIYSVCLQFCHKRATADTTSLQFQINIMGETSEEKHEDKVEKKE-KKDKEKHE 91
           L  NNC TI+   +QF        T         MG TSEEKHE KVEKKE KKDKEKHE
Sbjct: 5   LTPNNCRTIF---IQFSFNSGLDST---------MGGTSEEKHEGKVEKKEKKKDKEKHE 64

Query: 92  GGEDE----------------KKKEKKKKDPADKKDPTKLRQKLEKLETKMQALAVKKEE 149
             ED+                +KKEKKKKDPAD KDP KLRQKLEKLE KMQALAVKKEE
Sbjct: 65  EEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPADMKDPLKLRQKLEKLEDKMQALAVKKEE 124

[Close]

BLAST of Lcy06g003150 vs. NCBI nr
Match: XP_023519141.1 (protein PXR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 80/135 (59.26%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 32  LQTNNCTTIYSVCLQFCHKRATADTTSLQFQI-NIMGETSEEKHEDKVEKKE-KKDKEKH 91
           L  NNC TI+   +QF          S  F + + MG TSEEKHE KVEKKE KKDK KH
Sbjct: 5   LTPNNCRTIF---IQF----------SFNFGLDSTMGGTSEEKHEGKVEKKEKKKDKVKH 64

Query: 92  EGGEDE----------------KKKEKKKKDPADKKDPTKLRQKLEKLETKMQALAVKKE 149
           E  ED+                +KKEKKKKDPAD KDP KLRQKLEKLE KMQALAVKKE
Sbjct: 65  EEEEDDHGKKKGKDKDKDKEEGEKKEKKKKDPADMKDPLKLRQKLEKLEDKMQALAVKKE 124

[Close]

BLAST of Lcy06g003150 vs. NCBI nr
Match: XP_022994123.1 (protein PXR1 [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-17
Identity = 72/102 (70.59%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 66  MGETSEEKHEDKVEK-------------KEKKDKEKHEGGEDEKKKEKKKKDPADKKDPT 125
           MG  SEEKHEDKVEK             KEKK K+K + G++ +KKEKK KDPADKKDPT
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKEKKPKDPADKKDPT 60

Query: 126 KLRQKLEKLETKMQALAVKKEEVLKLLHEAEQNA----PPSS 151
           KLRQKLEKLE KMQALAVKKEEVLKLLHEAEQNA    PPSS
Sbjct: 61  KLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPSS 102

[Close]

BLAST of Lcy06g003150 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-08
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 68  ETSEEKHE--DKVEKKE-KKDKEKHEGGEDEK------------------KKEKKKKDPA 127
           +  EE+H   +K EKKE KKDK+K +  ED+K                  KK KK+K+P 
Sbjct: 12  DNKEEEHNKAEKAEKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNPE 71

Query: 128 DKKDPTKLRQKLEKLETKMQALAVKKEEVLKLLHEAEQNAPPSS 151
           DKKDP KL+ KL+K+E K+QA+ +KK+E++KL+H+AEQ  P ++
Sbjct: 72  DKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHDAEQAKPSTA 115

The following BLAST results are available for this feature:

BLAST of Lcy06g003150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g003150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AV24	4.9e-23	86.05	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]
A0A0A0LQQ8	1.6e-21	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1	[more]
A0A6J1E7S6	1.6e-18	59.70	protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1	[more]
A0A6J1K499	2.4e-17	70.59	protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1	[more]
A0A6J1C8D9	3.1e-17	75.00	nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1	[more]

BLAST of Lcy06g003150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	1.0e-22	86.05	PREDICTED: protein PXR1 [Cucumis melo]	[more]
KAG7012203.1	2.3e-19	76.92	Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022923831.1	3.4e-18	59.70	protein PXR1 [Cucurbita moschata]	[more]
XP_023519141.1	2.9e-17	59.26	protein PXR1 [Cucurbita pepo subsp. pepo]	[more]
XP_022994123.1	4.9e-17	70.59	protein PXR1 [Cucurbita maxima]	[more]

BLAST of Lcy06g003150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62750.1	4.4e-08	44.23	unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..120
None	No IPR available	PANTHER	PTHR36812:SF2	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 70..149
None	No IPR available	PANTHER	PTHR36812	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 70..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g003150.1	Lcy06g003150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006820	anion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005739	mitochondrion