Lcy06g001540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g001540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	GTPase IMAP family member 1, putative
Location	Chr06: 1487640 .. 1488149 (-)
RNA-Seq Expression	Lcy06g001540
Synteny	Lcy06g001540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAAGAGTGGCGCAAATGAGAGTGATGAGAAGAATCACTGGTGACATCAAAAACTTCTTTCTCCAAACCCTCACAGCAGCCAGAACTTGGATCACCAGTTTAATCCAACCCGAACCCAGCGACACGGACACCGAAGCTCACCGCCACCCGTCGACGGCGGCGAAAATGGTAGAGAAGTGGGAAAAGATGATGCTAACATTTTGCGTGGCCTCAGCCATCGCCATAGCCACCGTCTCTGTCCAAACTGAAACCAAACTGTCTCCTATGTTTCCTTTTCTGTCGATTGCTCTAATGGCATGCTTTGCTTTCATAGTCTCAGCTAAAGTCATTGAGCGCCAAATAGTTTCTCAAATTCTGTACTGCATCGGTGGGTTTTGGTTCGTCACGGCCTTCTTCATGGCCATTGCCATTCCTTATTCCCTTCACTTCCAAATTATAACATTTGCCATCTATCTCGTCTTCCTGTCCATTATCATTTTACTTTGTTATTTCTCTTGGCTTTAG

mRNA sequence

ATGGGAGAAAGAGTGGCGCAAATGAGAGTGATGAGAAGAATCACTGGTGACATCAAAAACTTCTTTCTCCAAACCCTCACAGCAGCCAGAACTTGGATCACCAGTTTAATCCAACCCGAACCCAGCGACACGGACACCGAAGCTCACCGCCACCCGTCGACGGCGGCGAAAATGGTAGAGAAGTGGGAAAAGATGATGCTAACATTTTGCGTGGCCTCAGCCATCGCCATAGCCACCGTCTCTGTCCAAACTGAAACCAAACTGTCTCCTATGTTTCCTTTTCTGTCGATTGCTCTAATGGCATGCTTTGCTTTCATAGTCTCAGCTAAAGTCATTGAGCGCCAAATAGTTTCTCAAATTCTGTACTGCATCGGTGGGTTTTGGTTCGTCACGGCCTTCTTCATGGCCATTGCCATTCCTTATTCCCTTCACTTCCAAATTATAACATTTGCCATCTATCTCGTCTTCCTGTCCATTATCATTTTACTTTGTTATTTCTCTTGGCTTTAG

Coding sequence (CDS)

ATGGGAGAAAGAGTGGCGCAAATGAGAGTGATGAGAAGAATCACTGGTGACATCAAAAACTTCTTTCTCCAAACCCTCACAGCAGCCAGAACTTGGATCACCAGTTTAATCCAACCCGAACCCAGCGACACGGACACCGAAGCTCACCGCCACCCGTCGACGGCGGCGAAAATGGTAGAGAAGTGGGAAAAGATGATGCTAACATTTTGCGTGGCCTCAGCCATCGCCATAGCCACCGTCTCTGTCCAAACTGAAACCAAACTGTCTCCTATGTTTCCTTTTCTGTCGATTGCTCTAATGGCATGCTTTGCTTTCATAGTCTCAGCTAAAGTCATTGAGCGCCAAATAGTTTCTCAAATTCTGTACTGCATCGGTGGGTTTTGGTTCGTCACGGCCTTCTTCATGGCCATTGCCATTCCTTATTCCCTTCACTTCCAAATTATAACATTTGCCATCTATCTCGTCTTCCTGTCCATTATCATTTTACTTTGTTATTTCTCTTGGCTTTAG

Protein sequence

MGERVAQMRVMRRITGDIKNFFLQTLTAARTWITSLIQPEPSDTDTEAHRHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIERQIVSQILYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLVFLSIIILLCYFSWL

Homology

[Close]

BLAST of Lcy06g001540 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 28  AARTWITSLIQPEPSDTDTEAHRHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTET- 87
           A R W +   + E  D+     R  +  A+MVE+W++M++  CV+SAI IATVSVQ ET 
Sbjct: 13  ACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETN 72

Query: 88  -KLSPMFPFLSIALMACFAFIVSAKVIER--QIVSQILYCIGGFWFVTAFFMAIAIPYSL 147
            +L   F FLSI ++ CF F+  AK+ +   + VS+ILYC+GGF  VTAFF+A AIP++ 
Sbjct: 73  KQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAP 132

Query: 148 HFQIITFAIYLVFLSIIILL 164
           +FQII F +YL+F  I +L+
Sbjct: 133 YFQIIIFILYLLFCFIFMLI 152

[Close]

BLAST of Lcy06g001540 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.4e-15
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 50  RHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSA 109
           R     A+MVE+ ++M++ FC++SAI IATVSVQT+TKL   F FLSIA++ CF  +  A
Sbjct: 22  RSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFA 81

Query: 110 KVIER--QIVSQILYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLVFLSIIILL 164
           ++I    + +S+ILYC GGF   T  F+A AIPY  HF II   +Y +F  I ++L
Sbjct: 82  RMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVML 137

[Close]

BLAST of Lcy06g001540 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 55  AAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIER 114
           AA+MVE+W+ M++ FCV+SAI IATVSV  +T+L   F  LSIA++ CF  +V A++I  
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 115 --QIVSQILYCIGGFWFVTAFFMAIAIPYSLHF 146
             + +S+ILYC+GG  + ++ F+A AIPY+  F
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]

BLAST of Lcy06g001540 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 48  AHRHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIV 107
           A R     A+ VE+ ++ ++  CV+SAI I T SVQ +TKL   F  LS+ ++ CF  +V
Sbjct: 22  ARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVV 81

Query: 108 SAKVIER--QIVSQILYCIGGFWFVTAFFMAIAIPY-SLHFQIITFAIYLVFLSIIILLC 167
            A++IE   + +S+ILYC+G F   T  F+A AI Y   HF  I   +Y +F  I I+  
Sbjct: 82  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 141

[Close]

BLAST of Lcy06g001540 vs. ExPASy TrEMBL
Match: A0A7N2M5A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-08
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 49  HRHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVS 108
           HRH     ++   W ++M+ FC+ASAI IA VSVQ   +LS  F  LS+A +  FA    
Sbjct: 71  HRH-----QIHMDWTEIMIGFCLASAIDIALVSVQVHAQLSATFHLLSLAFLFAFACFFV 130

Query: 109 AKVIERQ--IVSQILYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLVFLSIIIL 163
           ++ IE +  + +Q+L  +G F+ VTAFF+AIAIP+ L+ +  T+AIY + +  I +
Sbjct: 131 SEFIESKFLVTAQVLQKLGVFFTVTAFFIAIAIPFPLYHKFATWAIYTISVFAIFI 181

[Close]

BLAST of Lcy06g001540 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-28
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 14  ITGDIKNFFLQTLTAARTWITS--------LIQPEPSDTDTEAHRHPSTAAKMVEKWEKM 73
           ++  I   F + L+ AR +I +        L+  E +    E    P +A +M+ +WE M
Sbjct: 7   VSDGIVKLFSEALSRARAFIVNANAYANGRLVHSEEAGA-AEYQWRPVSAVEMLMQWENM 66

Query: 74  MLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIERQIVSQILYCIG 133
           M+TFC+ +AIAIATVSVQ +TKLSPMF FLS ALM CF F  SAK+I+ Q VS ILY +G
Sbjct: 67  MVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIKHQRVSLILYFLG 126

Query: 134 GFWFVTAFFMAIAIPYSLHFQIITFAIYLVFLSI 160
           GF FVTAFF+AIAIPY+ HFQI+T A+YLVFL I
Sbjct: 127 GFCFVTAFFIAIAIPYAFHFQILTLALYLVFLFI 159

[Close]

BLAST of Lcy06g001540 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 5.0e-18
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 55  AAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIER 114
           AA+MVE+W+ M++ FCV+SAIAIATVSVQ E KL  +F FLS+ L+ CF F+   K+ + 
Sbjct: 36  AAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKS 95

Query: 115 QI--VSQILYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLVFLSIIILLCYFS 168
            +  VS+ILYC+GG   VTA F+A AIPY+ +FQII F IYL+F  + +L+ + S
Sbjct: 96  ILKRVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIYLIFWLMFMLVAHKS 150

[Close]

BLAST of Lcy06g001540 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 55  AAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIER 114
           AA+MVE+W+ M++ FCV+SAI IATVSV  +T+L   F  LSIA++ CF  +V A++I  
Sbjct: 12  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 71

Query: 115 --QIVSQILYCIGGFWFVTAFFMAIAIPY 142
             + +S+ILYC+GG  + ++ F+A AIPY
Sbjct: 72  IFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of Lcy06g001540 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 14  ITGDIKNFFLQTLTA-----ARTWITSLIQPEPSDTDT--EAHRHPSTAAKMVE----KW 73
           +T   K FF+  +T      ++     L +P PS  +   +A      A  +VE    +W
Sbjct: 1   MTSRFKLFFVTIITQFIQLFSKYCYPQLSRPSPSTVEAIDQAEAPARAAVGVVEVQHKEW 60

Query: 74  EKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIALMACFAFIVSAKVIERQ--IVSQI 133
            ++ +TFC+ASAI IA VSVQ  ++LS  F  LS+ ++  FA  V +K I+ +  + +Q+
Sbjct: 61  TELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTILLAFASFVVSKFIKFKFLVSAQV 120

Query: 134 LYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLV-FLSIIILLC 165
           L   G F+ +TAFFMAI IP+ L+ +  ++A+Y +  L+I+I  C
Sbjct: 121 LENFGVFFTMTAFFMAITIPFPLYLKFASWAVYTISALAILICTC 165

[Close]

BLAST of Lcy06g001540 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-08
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 39  PEPSDTDTEAHRHPSTAAKMVEKWEKMMLTFCVASAIAIATVSVQTETKLSPMFPFLSIA 98
           P  +      HRH     ++   W ++M+ FC+ASAI IA VSVQ + +LS  F  LS+A
Sbjct: 61  PVEAAVSVVVHRH-----QIQMDWTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSLA 120

Query: 99  LMACFAFIVSAKVIERQ--IVSQILYCIGGFWFVTAFFMAIAIPYSLHFQIITFAIYLV- 158
           ++  FA    ++ I+ +  + +Q+L  +G F+ VTAFFMAI IP+ L+ +  T+AIY + 
Sbjct: 121 ILFAFACFFVSEFIKSKFLVTAQVLQKLGIFFTVTAFFMAITIPFPLYHKFATWAIYTIS 180

Query: 159 FLSIIILLCY 166
            L+I I  C+
Sbjct: 181 VLAIFICRCW 185

The following BLAST results are available for this feature:

BLAST of Lcy06g001540 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g001540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB6	1.4e-18	46.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LCY2	9.4e-15	47.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LSX4	1.2e-12	48.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQP5	3.8e-08	39.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A7N2M5A3	5.0e-08	40.52	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Lcy06g001540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584385.1	2.4e-28	53.25	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572911.1	5.0e-18	53.04	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652531.1	5.3e-12	49.44	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KAF3947053.1	3.6e-08	34.55	hypothetical protein CMV_026760 [Castanea mollissima]	[more]
KAF3947054.1	6.1e-08	38.46	hypothetical protein CMV_026761 [Castanea mollissima]	[more]

BLAST of Lcy06g001540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 36..165
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 36..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g001540.1	Lcy06g001540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding