Lcy06g001210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g001210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	mitochondrial import receptor subunit TOM5 homolog
Location	Chr06: 1086666 .. 1088553 (-)
RNA-Seq Expression	Lcy06g001210
Synteny	Lcy06g001210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAATTTTTCTCGTCTCCCAACCAAACCCCAGAACCCAAAACCCTAGCGCCTCATACGCCTTCCTCTCTGTAGTACGAGCGAAATGGCCGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTCTCTTTTCTGGAACCGCGAATTCGGTGGAGACGGTGAAATCCTTTTTCAATTCTCAGGTTCACGACGAGGAAAAGTGGGCCTTGAACATGGTACTCATCCGATCATTTTAATTTCATTTGAAAATCTATTTCTTCCTTCGTAAACTCTTCTAAGTGTGATTTCTAGGATTGGGCAACAATTTTTTTATTGTTTGTGTTACATTATTAAGGACTTGCGCTCCATTTGGTAGCTGAGAAGCTCGAGAAATTATGAGATTTTTGTTTGATTCCGGCAGTAGAATATAAAGTGTCGATCCTTTAATGGAAATGTGTATTTTAGAGCCTGACACTAGTAGATTCAGTCTATCCTCGAAGCTGCTATAACTGCTTCGAAATTAAAGAAATTTCAGGAGGAAAACTAAATTTTCTAGGAGATAGGTCTGGAGAACATTTTTTCATGTTGAATCTAAGTACTCGATGGATGGCTGTTTCTGATATCGTTTGTGTTCAGAGCAGTTAATTTCCTCTTCGTCTCATTTTGTTATGCGGCCTTCTGTTTTGGCTCCTAATTTTTGGTCCTCTTAAACTGTGATTAAACTGTAATGGAAATTTTTATGTTTTTTTTTTTTTTTTTTGGTTTGTGGTGATTTCAAACGGGTTGTAGGTTTGCCTGTGTTTAGTACTTGTTTGATGGTTTGTTGGAGCTGGGAGGATTGAAGGGTGAGATGTATTTTATTACTCGTATGATGAAAAAATGAATTCCAGTACTTTAAGCATTCGACCATAGATGCTTAGGGGGATCCTTGCACATGGTGAATAACCAAAATTTAAATATATACGCATACTTTTATAAAACTATTTTTTTTTTTTAAAGAACTTTTATAAAACTATTATGTGTAGCAACACTTCTTACAATTTTAGGATTTGTGTAAATTGTAATTCTTTTTTCTATTCAAATGCCTCATACCTCCTTTAGGGCTTATACATCTCCTTTTCAAGATGAATAGCCTCTAGGCTGTCTTTAGCCTCTTAAAAAGTTGATTCAAATTAGATAATTGATAGAAATCTCTATGAGTTATTCTGTCTTTTGAGATTTGGGTAAGAGTGCCAATGCATGGTAAACTTTCTTATCTTTTTGAACCTGAAACATAAAACTGAACATGATCGGTGTTTTTCCATTTCCAATAAGCATTGTAGCCGTTGCTGCGGTAAATTTGAAATTTGAATGGATTAAAAGAATGTTTTGTCATCAAGAAAAGAGATGAATGTCTGGAAATGGTTGTAACAGAGCCATGTTACTACCTTCATCATTTGGAAGAAACACTGGTCAAACTAAGATTTTGGAGAGTAGTATCTTTGTTATTTTTGCTATCTTAGGCAGGAAAAAACAACGTTTCCTTATGTAGATTTGAATTTTGTTTTCCTCTTTTTGGTTGCAGAAATTGCTTCGTGCAGCTGGAGTGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTTATGGCAATATGAGAGATAATGGAAGGGCAGCAATGCTTAGCTTATAACTTTTCTCTATTTTTGAGTTTGTTACAACTATATTCAATTTCGGATAGGAAGCTTCAAAAAATTTTCTCTTGATAATGTTGGAATCGATGAGAATGTCTGATCTCTTTTACCCCTTTGAAATAGACTAATTTTTCAATGTACTCCTTAGGGAAATATGAAGACTGAAATCCAAAACACTTAACCATGGGTTGGCCTAGTGGTCAATAAATGGCTTAAAAAAAATGAGTTCAA

mRNA sequence

CCAATTTTTCTCGTCTCCCAACCAAACCCCAGAACCCAAAACCCTAGCGCCTCATACGCCTTCCTCTCTGTAGTACGAGCGAAATGGCCGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTCTCTTTTCTGGAACCGCGAATTCGGTGGAGACGGTGAAATCCTTTTTCAATTCTCAGGTTCACGACGAGGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCAGCTGGAGTGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTTATGGCAATATGAGAGATAATGGAAGGGCAGCAATGCTTAGCTTATAACTTTTCTCTATTTTTGAGTTTGTTACAACTATATTCAATTTCGGATAGGAAGCTTCAAAAAATTTTCTCTTGATAATGTTGGAATCGATGAGAATGTCTGATCTCTTTTACCCCTTTGAAATAGACTAATTTTTCAATGTACTCCTTAGGGAAATATGAAGACTGAAATCCAAAACACTTAACCATGGGTTGGCCTAGTGGTCAATAAATGGCTTAAAAAAAATGAGTTCAA

Coding sequence (CDS)

ATGGCCGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTCTCTTTTCTGGAACCGCGAATTCGGTGGAGACGGTGAAATCCTTTTTCAATTCTCAGGTTCACGACGAGGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCAGCTGGAGTGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTTATGGCAATATGA

Protein sequence

MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLMRNYGDLMAI

Homology

[Close]

BLAST of Lcy06g001210 vs. ExPASy Swiss-Prot
Match: Q9SD80 (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM5 PE=1 SV=3)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-12
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLMRNYGDLMAI 70
          S+E +K+ ++S+VHDE+KWA+NMKLLRA G+FAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

[Close]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL
Match: A0A6J1KHR6 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495362 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          M DASSSVKKVKNFLFSGTANSVETVKSF+NSQVHDEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL
Match: A0A6J1EBN7 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431705 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          M DASSSVKKVKNFLFSGTANSVETVKSF+NSQVHDEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL
Match: A0A5D3BJP0 (Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001420 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MAD SSSVKKVKN LFSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL
Match: A0A0A0LSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MAD SSSVKKVKN LFSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL
Match: A0A1S3BQV4 (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MAD SSSVKKVKN LFSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Lcy06g001210 vs. NCBI nr
Match: KAG6572899.1 (Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012088.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          M DASSSVKKVKNF+FSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Lcy06g001210 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo] >KAG6584406.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019992.1 Mitochondrial import receptor subunit TOM5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          M DASSSVKKVKNFLFSGTANSVETVKSF+NSQVHDEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Lcy06g001210 vs. NCBI nr
Match: XP_038894051.1 (mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MADASSSV KVKNFLFSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADASSSVNKVKNFLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Lcy06g001210 vs. NCBI nr
Match: XP_004137442.1 (mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >TYJ98941.1 mitochondrial import receptor subunit TOM5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MAD SSSVKKVKN LFSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Lcy06g001210 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 8.5e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADASSSVKKVKNFLFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLM 60
          MADASSS+KKVKNF+ SGT+NSVETV+SF NSQ+HDEEKWALNMKLLRAAG+FAGSILLM
Sbjct: 1  MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Lcy06g001210 vs. TAIR 10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGVFAGSILLMRNYGDLMAI 70
          S+E +K+ ++S+VHDE+KWA+NMKLLRA G+FAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

The following BLAST results are available for this feature:

BLAST of Lcy06g001210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD80	2.3e-12	62.50	Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Lcy06g001210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHR6	2.6e-27	95.65	mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EBN7	2.6e-27	95.65	mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662...	[more]
A0A5D3BJP0	1.4e-25	92.75	Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. mak...	[more]
A0A0A0LSV3	1.4e-25	92.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1	[more]
A0A1S3BQV4	1.4e-25	92.75	mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Lcy06g001210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572899.1	4.1e-27	95.65	Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argy...	[more]
XP_022924183.1	5.3e-27	95.65	mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230...	[more]
XP_038894051.1	4.5e-26	94.20	mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida]	[more]
XP_004137442.1	2.9e-25	92.75	mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_0084511...	[more]
XP_022137624.1	8.5e-25	88.41	mitochondrial import receptor subunit TOM5 homolog [Momordica charantia]	[more]

BLAST of Lcy06g001210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08040.1	1.6e-13	62.50	mitochondrial import receptor subunit TOM5 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034553	Mitochondrial import receptor subunit TOM5 homologue, viridiplantae	PANTHER	PTHR37251	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG	coord: 19..69
None	No IPR available	PANTHER	PTHR37251:SF1	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG	coord: 19..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g001210.1	Lcy06g001210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex