Lcy06g000690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g000690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Disulfide bond formation protein B 2, putative
Location	Chr06: 603597 .. 604829 (-)
RNA-Seq Expression	Lcy06g000690
Synteny	Lcy06g000690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCACCACATTGACTTTAAAATATCATAATTTCCCCTTTCCCCCCACTTCCCAAGTTTTCCTCTTTCACTTTCCAAAGAGAATCCTAGGGTTTAAACCCTGTCAAAACAAACAAACCACCTCCATATAAAATGTTCTTGTTGCTATCACTTTCTTTTTGACTTTGTGTAGCAATCTTATAAACATTACACAGGAGTTCCTTTGAAACAATAATGTGAATACAAGTATAAATTGCCATCTAGCTCAAGCACCCATCAAACACAATTCTTTTTTTTTCTTGTCTGCTAACTCAAGCCATCAGCTCTGAGATTTCATTTATAAATACCTCCATTGCCTTCCTCTGGTTTGAAGCAGAGCAGCACTTTCAGCAATGGCAGCCACTGATTTCCTTCGTTTACTCGTCATCTTCTTGGGATTTTATAGCCTTCTCTGTTCCAATGCTGTCCCAACTTCAAGTAAGCCTCACAAATCAATCCATTGATGCTCTCTTTGTATGCTTTCTTTCTTTATCTTATCATGAACTAAATGCTTCTGATCTGATTCTGTAGGAAGTGTCAGCCTCATGCATGGATCTGATCAATTTCTTCAAGTTCCAAGCAACACCCACATGGTATATTACATTACCCATCAATCTAAATGTCTTTGTACCTTCAAGTTTCTACCTTTTTGTCAGCGTTCGTGTTAATTTAACATAGTATCAGAACACGACGTTCCTATGTTGGAGTTCTATACACTTCCATCTCTTCTCTAATTACTATCAATAATCACTCGGGTTTTGAAAAAAGAGTACTACGAGATTAAATTTATCGTAACTTATCAATTTGACATTGAAGGTTTCTGTTAATGCAGGTGACTGCAACAAAGGAAGAAATGAGCCATGGAAGAATGGTTATAGCACTCAATGACTATCCAGGATCTGGAGCCAACAATCGCCACACACCAAGGCCACAATTTAGAGGCTGTGCTGATTGTTGATTAGTTTTTATATTACATATTTATATGATATATTGGTCTGAAATATCTATCTATCTATAATATATTATATATATGTATATGGGGTTGTGGATGGAGGGTTTGGGCTTCTTCATCACTCTATTAAGTTGTTGAAAAGCTGAGGAAAGAGGAGGGTAAAAAGATTTATATGATTAGGTGAAAAATGGGTACCAAAAATATGTGTAATTTTGTAAAACAAAGAGCCATTTCTTAGCTTATTTATTCAGTAATATATAAT

mRNA sequence

TTTCTCACCACATTGACTTTAAAATATCATAATTTCCCCTTTCCCCCCACTTCCCAAGTTTTCCTCTTTCACTTTCCAAAGAGAATCCTAGGGTTTAAACCCTGTCAAAACAAACAAACCACCTCCATATAAAATGTTCTTGTTGCTATCACTTTCTTTTTGACTTTGTGTAGCAATCTTATAAACATTACACAGGAGTTCCTTTGAAACAATAATGTGAATACAAGTATAAATTGCCATCTAGCTCAAGCACCCATCAAACACAATTCTTTTTTTTTCTTGTCTGCTAACTCAAGCCATCAGCTCTGAGATTTCATTTATAAATACCTCCATTGCCTTCCTCTGGTTTGAAGCAGAGCAGCACTTTCAGCAATGGCAGCCACTGATTTCCTTCGTTTACTCGTCATCTTCTTGGGATTTTATAGCCTTCTCTGTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCATGCATGGATCTGATCAATTTCTTCAAGTTCCAAGCAACACCCACATGGTGACTGCAACAAAGGAAGAAATGAGCCATGGAAGAATGGTTATAGCACTCAATGACTATCCAGGATCTGGAGCCAACAATCGCCACACACCAAGGCCACAATTTAGAGGCTGTGCTGATTGTTGATTAGTTTTTATATTACATATTTATATGATATATTGGTCTGAAATATCTATCTATCTATAATATATTATATATATGTATATGGGGTTGTGGATGGAGGGTTTGGGCTTCTTCATCACTCTATTAAGTTGTTGAAAAGCTGAGGAAAGAGGAGGGTAAAAAGATTTATATGATTAGGTGAAAAATGGGTACCAAAAATATGTGTAATTTTGTAAAACAAAGAGCCATTTCTTAGCTTATTTATTCAGTAATATATAAT

Coding sequence (CDS)

ATGGCAGCCACTGATTTCCTTCGTTTACTCGTCATCTTCTTGGGATTTTATAGCCTTCTCTGTTCCAATGCTGTCCCAACTTCAAGAAGTGTCAGCCTCATGCATGGATCTGATCAATTTCTTCAAGTTCCAAGCAACACCCACATGGTGACTGCAACAAAGGAAGAAATGAGCCATGGAAGAATGGTTATAGCACTCAATGACTATCCAGGATCTGGAGCCAACAATCGCCACACACCAAGGCCACAATTTAGAGGCTGTGCTGATTGTTGA

Protein sequence

MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGRMVIALNDYPGSGANNRHTPRPQFRGCADC

Homology

[Close]

BLAST of Lcy06g000690 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AA+ FLRLLVIFLG Y+LLCSNAVPTSRSVSL+HGS  FL V S+THMVT T+EE SHGR
Sbjct: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESHGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AA+ FLRLLVIFLG Y+LLCSNAVPTSRSVSL+HGS  FL V S+THMVT T+EE SHGR
Sbjct: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESHGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.7e-35
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AA+ FLRLLVIFLG Y+LLCSNAVPTSRSVSL+HGS  FL V ++THMVT T+EE SHGR
Sbjct: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESHGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. ExPASy TrEMBL
Match: A0A6J1KDD0 (uncharacterized protein LOC111492835 OS=Cucurbita maxima OX=3661 GN=LOC111492835 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHG 60
          MA T+FL LLV+FLG  +LLCSNAVPTSRSVSL+HGSDQFL V S+THMV+ATK+E SHG
Sbjct: 1  MATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEQSHG 60

Query: 61 RMVIALNDYPGSGANNRHTPRPQFRGCADC 91
          RM + LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 RMSVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lcy06g000690 vs. ExPASy TrEMBL
Match: A0A6J1GC04 (uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC111452592 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.7e-34
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHG 60
          MA T+FL LLV+FLG  +LLCSNAVPTSRSVSL+HGSDQFL V S+THMV+ATK+E +HG
Sbjct: 1  MATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEENHG 60

Query: 61 RMVIALNDYPGSGANNRHTPRPQFRGCADC 91
          RM + LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 RMAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lcy06g000690 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 9.0e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AA+ FLRLLVIFLG Y+LLCSNAVPTSRSVSL+HGS  FL V S+THMVT T+EE SHGR
Sbjct: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESHGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. NCBI nr
Match: KAA0036087.1 (putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AA+ FLRLLVIFLG Y+LLCSNAVPTSRSVSL+HGS  FL V ++THMVT T+EE SHGR
Sbjct: 3  AASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESHGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. NCBI nr
Match: KAG6607449.1 (hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037107.1 hypothetical protein SDJN02_00728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 73/90 (81.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHG 60
          MA+T+FL LLV+FLG  +LLCSNAVPTSRSVSL+HGSDQFL V S+THMV+ATK+E SHG
Sbjct: 1  MASTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEESHG 60

Query: 61 RMVIALNDYPGSGANNRHTPRPQFRGCADC 91
          RM + LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 RMAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lcy06g000690 vs. NCBI nr
Match: XP_038895124.1 (uncharacterized protein LOC120083435 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 76/89 (85.39%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 2  AATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHGR 61
          AAT FLRLLVIFLG  SLLCSNAVPTSRSVSL+ GS  FL V SNTHMVTAT+EE+S GR
Sbjct: 3  AATHFLRLLVIFLGLCSLLCSNAVPTSRSVSLLRGSHPFLLVSSNTHMVTATEEEVSRGR 62

Query: 62 MVIALNDYPGSGANNRHTPRPQFRGCADC 91
          MV+ALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Lcy06g000690 vs. NCBI nr
Match: XP_022998079.1 (uncharacterized protein LOC111492835 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.4e-34
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHG 60
          MA T+FL LLV+FLG  +LLCSNAVPTSRSVSL+HGSDQFL V S+THMV+ATK+E SHG
Sbjct: 1  MATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEQSHG 60

Query: 61 RMVIALNDYPGSGANNRHTPRPQFRGCADC 91
          RM + LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 RMSVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of Lcy06g000690 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-06
Identity = 40/91 (43.96%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MAATDFLRLLVIFLGFYSLLCSNAVPTSRSVSLMHGSDQFLQVPSNTHMVTATKEEMSHG 60
          MA    + LLVIF    S +       SR  SLM    + ++   +T M    K+E+   
Sbjct: 1  MANKALIHLLVIFFLALSHIFFFPSHASRLGSLME-KPKIVRPQQDTLM--DVKKEVEE- 60

Query: 61 RMVIALNDYPGSGANNRHTPRPQFRGC-ADC 91
          RMV+ LNDYPGSGANNRH PR   RGC  DC
Sbjct: 61 RMVMELNDYPGSGANNRHLPRQ--RGCVVDC 85

[Close]

BLAST of Lcy06g000690 vs. TAIR 10
Match: AT1G74458.1 (unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.7e-04
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 0


Query: 66 LNDYPGSGANNRHTPRPQFRGCADC 91
          +NDYPGSGANNRHTP      C+DC
Sbjct: 75 INDYPGSGANNRHTPH-----CSDC 94

The following BLAST results are available for this feature:

BLAST of Lcy06g000690 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g000690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKK4	4.4e-35	84.27	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	4.4e-35	84.27	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	9.7e-35	83.15	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1KDD0	1.7e-34	81.11	uncharacterized protein LOC111492835 OS=Cucurbita maxima OX=3661 GN=LOC111492835...	[more]
A0A6J1GC04	3.7e-34	80.00	uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]

BLAST of Lcy06g000690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442734.1	9.0e-35	84.27	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]
KAA0036087.1	2.0e-34	83.15	putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa]	[more]
KAG6607449.1	2.6e-34	81.11	hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038895124.1	2.6e-34	85.39	uncharacterized protein LOC120083435 [Benincasa hispida]	[more]
XP_022998079.1	3.4e-34	81.11	uncharacterized protein LOC111492835 [Cucurbita maxima]	[more]

BLAST of Lcy06g000690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	3.2e-06	43.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G74458.1	6.7e-04	68.00	unknown protein; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 4..85
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 4..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g000690.1	Lcy06g000690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane