Lcy06g000450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g000450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor PRE5-like
Location	Chr06: 485339 .. 485905 (+)
RNA-Seq Expression	Lcy06g000450
Synteny	Lcy06g000450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCCTCTTCCCTCTTCCCTCTAATCCCTCTCTCGTTTTCCTTTCAATTTCCTTCATTATTCATGGCTTCCTCCAAATTTGCTGACGACGAGATTAAAAATCTAGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCGTAAGCCCGACGACAACTCTGCGGTATATATATATATATATATACACATTTGTATACTCTCTCTTCTCTTTTTCTTAGACGTAGACGTCAACGTAGAGCTTTTGAGTTCAGTAATGACTTAGTTTACCGTAACTTGGGCAGGTGTCGGCGGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGAATCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTTCTCACTTAAGAATTTTTCATTTTAATGAATGACAATCTTTCTAGCTCTTTTGGGTAATTATCAAAATATCTTTCTTTTTTTTTTTTTTTTGGGTTCACTGATCTCACTGTTTTGTATTTTGAAATGGAGTTTGGTCTCAGCATTAC

mRNA sequence

CTCCCCTCTTCCCTCTTCCCTCTAATCCCTCTCTCGTTTTCCTTTCAATTTCCTTCATTATTCATGGCTTCCTCCAAATTTGCTGACGACGAGATTAAAAATCTAGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCGTAAGCCCGACGACAACTCTGCGGTGTCGGCGGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGAATCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTTCTCACTTAAGAATTTTTCATTTTAATGAATGACAATCTTTCTAGCTCTTTTGGGTAATTATCAAAATATCTTTCTTTTTTTTTTTTTTTTGGGTTCACTGATCTCACTGTTTTGTATTTTGAAATGGAGTTTGGTCTCAGCATTAC

Coding sequence (CDS)

ATGGCTTCCTCCAAATTTGCTGACGACGAGATTAAAAATCTAGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCGTAAGCCCGACGACAACTCTGCGGTGTCGGCGGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGAATCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTTCTCACTTAA

Protein sequence

MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLESMGVDFEMVKDLLLT

Homology

[Close]

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-12
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          SS+ +DD+I +LV KLQ L+P+L R+  D   VSA+++L+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK--VSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQLES 69
           + L S
Sbjct: 74 SELLAS 77

[Close]

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-10
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          +S+ ++D+I +L++KLQ LLP+L R    +  VSAA +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPEL-RDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-10
Identity = 30/68 (44.12%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 2  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSER 61
          +SS+ +DD+I +L+ KL+  +P++ +    N+ VSA+++L+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNT-VSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLESM 70
          L + LES+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 31/70 (44.29%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          +S+ +DD++ +LV KL+  LP+++ +   +  VSA+++L+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDK-VSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLESMGVD 73
           + L+S+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 62
          +S   D++I +LVL+L  LLP+L  NR+   +  VSA+ +L+ETC YI+ L +EVDDLSE
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRR---SGKVSASRVLQETCSYIRNLSKEVDDLSE 72

Query: 63 RLWKQLESM-GVDFEMVKDLLL 82
          RL + LES       +++ LL+
Sbjct: 73 RLSQLLESTDSAQAALIRSLLM 91

[Close]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  DDE+KNLV KLQ+LLPQLN KP ++S VSA EIL+ETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLESMGVDFEMVKDLL 81
          RLWKQL+SMG+DFEMVKDLL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLESMGVDFEMVKDLLL 82
          RLWKQL+SMGVDFEMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLESMGVDFEMVKDLLL 82
          RLWKQL+SMGVDFEMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.2e-24
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLESMGVDFEM 76
          RLWKQL+SMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL
Match: A0A5N5I0V3 (Transcription factor PRE6-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029716 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          +SK +DDEIK LVLKLQ LLPQL+     N+ VSA+ ILEETC YIK+L REV+DLS+RL
Sbjct: 13 ASKPSDDEIKELVLKLQPLLPQLHH--SRNAPVSASSILEETCSYIKRLHREVEDLSKRL 72

Query: 63 WKQLESMG---VDFEMVKDLL 81
           + L+S G   VD E+++ LL
Sbjct: 73 SQLLDSAGITDVDEELIRTLL 91

[Close]

BLAST of Lcy06g000450 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 7.5e-28
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  DDE+KNLV KLQ+LLPQLN KP ++S VSA EIL+ETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLESMGVDFEMVKDLL 81
          RLWKQL+SMG+DFEMVKDLL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of Lcy06g000450 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 6.3e-27
Identity = 66/83 (79.52%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSA--VSAAEILEETCDYIKKLQREVDDL 60
           MASSK ADD+++NLV KLQ+LLP LNRKPD++SA  VSA +IL+ETCDYIKKLQREVDDL
Sbjct: 42  MASSKLADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDL 101

Query: 61  SERLWKQLESMGVDFEMVKDLLL 82
           SERLWKQL+SMGVD EMVKDL+L
Sbjct: 102 SERLWKQLDSMGVDLEMVKDLIL 124

[Close]

BLAST of Lcy06g000450 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLESMGVDFEMVKDLLL 82
          RLWKQL+SMGVDFEMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of Lcy06g000450 vs. NCBI nr
Match: TYJ98875.1 (transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 6.5e-24
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSK  D+E+KNLV KL++LLPQLN KPD++S  S  EIL+ETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLESMGVDFEM 76
          RLWKQL+SMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of Lcy06g000450 vs. NCBI nr
Match: KAG6607436.1 (Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 60
          MASSKF DD+IKNLVLKL +LLPQLN K  D+S V  AEIL+ETCD IKKL+RE+DDLSE
Sbjct: 1  MASSKFRDDKIKNLVLKLHTLLPQLNHK-FDHSKVPIAEILKETCDCIKKLEREIDDLSE 60

Query: 61 RLWKQLESMGVDFEMVK 78
          RLW+QLESMGVD EMVK
Sbjct: 61 RLWEQLESMGVDLEMVK 76

[Close]

BLAST of Lcy06g000450 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-13
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          SS+ +DD+I +LV KLQ L+P+L R+  D   VSA+++L+ETC+YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK--VSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQLES 69
           + L S
Sbjct: 74 SELLAS 77

[Close]

BLAST of Lcy06g000450 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          +S+ ++D+I +L++KLQ LLP+L R    +  VSAA +L++TC+YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPEL-RDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of Lcy06g000450 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-11
Identity = 30/68 (44.12%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 2  ASSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSER 61
          +SS+ +DD+I +L+ KL+  +P++ +    N+ VSA+++L+ETC+YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNT-VSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLESM 70
          L + LES+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of Lcy06g000450 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-11
Identity = 31/70 (44.29%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQLNRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSERL 62
          +S+ +DD++ +LV KL+  LP+++ +   +  VSA+++L+ETC+YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDK-VSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLESMGVD 73
           + L+S+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of Lcy06g000450 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 3  SSKFADDEIKNLVLKLQSLLPQL--NRKPDDNSAVSAAEILEETCDYIKKLQREVDDLSE 62
          +S   D++I +LVL+L  LLP+L  NR+   +  VSA+ +L+ETC YI+ L +EVDDLSE
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRR---SGKVSASRVLQETCSYIRNLSKEVDDLSE 72

Query: 63 RLWKQLESM-GVDFEMVKDLLL 82
          RL + LES       +++ LL+
Sbjct: 73 RLSQLLESTDSAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of Lcy06g000450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	7.8e-12	54.55	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9CA64	2.5e-10	53.33	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q9LXG5	7.3e-10	44.12	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9LJX1	1.2e-09	44.29	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
F4JCN9	1.6e-09	45.12	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]

BLAST of Lcy06g000450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	3.6e-28	82.50	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5A7SZP9	5.2e-27	77.78	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	5.2e-27	77.78	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A5D3BKI2	3.2e-24	77.33	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5N5I0V3	1.2e-12	59.26	Transcription factor PRE6-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 ...	[more]

BLAST of Lcy06g000450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649678.1	7.5e-28	82.50	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
XP_038895474.1	6.3e-27	79.52	transcription factor PRE5-like [Benincasa hispida]	[more]
XP_008440200.1	1.1e-26	77.78	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
TYJ98875.1	6.5e-24	77.33	transcription factor PRE5-like [Cucumis melo var. makuwa]	[more]
KAG6607436.1	4.7e-22	77.92	Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy06g000450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	5.5e-13	54.55	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	1.8e-11	53.33	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G15160.1	5.2e-11	44.12	BANQUO 2	[more]
AT3G28857.1	8.8e-11	44.29	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	1.2e-10	45.12	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..80
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 8..77 e-value: 2.0E-9 score: 39.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..63
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 9..52 e-value: 3.7E-6 score: 26.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..51 score: 9.356071
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g000450.1	Lcy06g000450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity