Lcy06g000340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g000340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine-rich RNA-binding protein 4
Location	Chr06: 388657 .. 391706 (+)
RNA-Seq Expression	Lcy06g000340
Synteny	Lcy06g000340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAATCTACCTCTAAATAATTATACCATGAAGCAAAGGATTAATGTGATACGGTGTCGTTTGAAGGAGGTCCAGATTGACAGAAAAATGGGGTACGGTCCCCAATCTTCCGGTTTGCTAATTCCTGAAATTGCTGTACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACCGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGTTTCAGATCACTCATCATCACAATATCCGTTCAACCGAGCCGCATATGCGAATTCAAAGCCTTCAATCCCAATTTCCTTACTGTACTGTGCCACTCCCTTTCTTCTCCGTGAAGAAGATTCATTCAATTTCAGACTCACCGCTCTTTTCAGTGACATGTGTCTCTTCTTCGCCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTCAGTGGTTGATTTTCTTTCTCTCAATTGTGCATTTTGCACTTCATTTAGGCGTAATTTTGCTAACTATGTCTGTAGAGACAAATTGGATTTATTGAATGGTTCCAATTTCACGCGTGCAGGACTTTCTTTCCGAACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGACTAGTACACTTTTGTATTCTAAACGTCCCATTTTGTCAATAAAATTTTGGCGCTAACTGTTCTCGGTTGTTATATGATTCAGTCAATTTGGTGATGGATAAAGTGGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTACTTTCAATGCTCTATCTTTGCAATCTTCACTCGGTCTAATCTCTTCCAAATGTGTGTAGTTTTCAGTTTCACACTGCATATTGCATTTGAATCTTATTTTCTTCTGTATTATATATCATATATTATCCTCTTAAATCGTCAAAATCCACTTAATGCTCAACGTGTGCGTCGCGAAGTGATGTAAGGGCAGTACTATTCACAATAGTTCTGAAAATTTTGTCATCTCATTTGAGTTGCGCTATCTTAATGCTCTTTTCTTATTCACTGTGATTTTGTAATGCATATAACTCACTGTCTAGAAGTATATCCCATCCAGTCATCTCTAGCTTAAGAACTCTAAATGAGTATAATCTACAAATTAAGAAGTTCAATTCCATCAATTGCCATCTCGAGCAAGGCTTTTCAGTTTAAATAAATTATCTTTCTCAATCTTATGATATAAAATTATAGAATGCTCAACTCTACATACATTATGAAAAATTATAAATGGACTCCAGTTTAGGCATTACCTAAGAAGCACGGACACTTTAGTTTGGCCAGCGTATCCATGTCAGACACTTGGATACTCTGTCACTTATTGGACACGTATCGAACACTTGTTAGCACACTTGGTATGTGGCAAACACTAGTTGTACAAAGTCAATATAGGTCCATATCGAACACTTGGTTAAGTATACTAAATAGACACAATACTAAATGACAAAGATAATAAATTTAAGAGTGAAATACATTAAACTCATTTTTTTTAAGCATACAAATACATAAACTTATTGATTTTGAATTTCCTTCTGGTATAAAATGATATATACTTTAAAAATGTATATTTTACTAAACATATATGTGTCGTGTCCGTGTCCTAGATTTAAAAAAAAAATGATGTGTCTCCTGTCCATATCCGTACTTCTTAGGGCATCACACTGAATGGATACATAGATAGGAGGAGTTGGTTATAATAGATTCAAAGTAGTATTAATGAGATGGAAGGTAGCATTCATCCAGTTATTTCTAATCTTACTTCCTGTCCTGGCTGTGAAACATTGGAACTGTTTTACCTTCAAATGGGAAAATAAATCGTTATGCTTGTTATGAAAGGATTTCTTTCTTTTAAACTCTAACAACACAAGATTCAATAAGTGTATGTTTTAAGCGAACAATTTGTGCATCCGAGTTACAGAATTGGCCGAAATACTGTTTAAATATGACTATATGAGGCACTCTGGACTAGAGGTTTCTTCCAATTTAGAGTGATAACTATGTTTGTTGAAGTTAATAGTTTTTTTTTTTTTTTAGTACATCAACATTTGGGAGTGGGGGATTCGAACCTTTGACCTCATGGTCAAGGACACATGTCAATTACCGCTGAGCTAAGCTCGCTTTGGCTTTGTTGAAGTTAATAGTCAAAGAACTTATTCTTAGGTTTATTTCATGGATATACCCTCCCCACCTCTTATCATTGGCAGGCATAAATTGATATGATATTCTTATCTCTGATTCCATGGATAAAATTCTGGTGCCACCTGCTAATGAAAAAGGCTACTTTTGAAATCTAGCTTATAGCTGGGACTGGGAGGGTCTGATCTGTGTCATCTAATTATGGTTGTTTTTTGAATAAATCTTTGATGATCTTGTTGCTTTAAATATGTTGGTGCGTGTTTGTTTCAAGCATAGTAGCTTCATGGGCTAATAGGGGCAACTTTGGTTTAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAAGGCTAGTACATAGAGATCATTGTTTCCCTCGTATTGAAATTTAAAAGAGCTGTCATTTCTTTTAGGAATATATATTTATATATATATATATATATATGGACAGGCTTTGGGTTATTGTTATTGGTATGAGAAAGCTTGATGTGTTGCCTGTATGATATTTAGTCAAAGTGTGTTTCTGGAAGCAGCTTTTTCTCTTGATATTAAATGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGGGCTATGGTCAAAGCTCACAGGTCTGTAATAAGAATAAGAATGCTTCTGAAAATATTTAGAGGACTTTTAGGGGTACCAGACATGGACCCGTGAGAATGTGGGACATAGTTGGAAACAAGGAGAGGCCTCCCGTCCCTGCTAAATCTCTCTTTAGAAAAATATATC

mRNA sequence

ATAAAATCTACCTCTAAATAATTATACCATGAAGCAAAGGATTAATGTGATACGGTGTCGTTTGAAGGAGGTCCAGATTGACAGAAAAATGGGGTACGGTCCCCAATCTTCCGGTTTGCTAATTCCTGAAATTGCTGTACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACCGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGTTTCAGATCACTCATCATCACAATATCCGTTCAACCGAGCCGCATATGCGAATTCAAAGCCTTCAATCCCAATTTCCTTACTGTACTGTGCCACTCCCTTTCTTCTCCGTGAAGAAGATTCATTCAATTTCAGACTCACCGCTCTTTTCAGTGACATGTGTCTCTTCTTCGCCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTCAGTGGACTTTCTTTCCGAACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTGGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAAGGCTAGTACATAGAGATCATTGTTTCCCTCGTATTGAAATTTAAAAGAGCTGTCATTTCTTTTAGGAATATATATTTATATATATATATATATATATGGACAGGCTTTGGGTTATTGTTATTGGTATGAGAAAGCTTGATGTGTTGCCTGTATGATATTTAGTCAAAGTGTGTTTCTGGAAGCAGCTTTTTCTCTTGATATTAAATGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGGGCTATGGTCAAAGCTCACAGGTCTGTAATAAGAATAAGAATGCTTCTGAAAATATTTAGAGGACTTTTAGGGGTACCAGACATGGACCCGTGAGAATGTGGGACATAGTTGGAAACAAGGAGAGGCCTCCCGTCCCTGCTAAATCTCTCTTTAGAAAAATATATC

Coding sequence (CDS)

ATGACCGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGTTTCAGATCACTCATCATCACAATATCCGTTCAACCGAGCCGCATATGCGAATTCAAAGCCTTCAATCCCAATTTCCTTACTGTACTGTGCCACTCCCTTTCTTCTCCGTGAAGAAGATTCATTCAATTTCAGACTCACCGCTCTTTTCAGTGACATGTGTCTCTTCTTCGCCTTCGCCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTCAGTGGACTTTCTTTCCGAACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTGGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATCTTTGTGGAAGTTGCCAAGTCCAGATGGGAGCTTCGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS

Homology

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BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-32
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 52  SVKKIHSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQL 111
           S ++   I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWEL 168
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+R ++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 71  SSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENS 176
           +RYAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.0e-18
Identity = 42/84 (50.00%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 146 MHGKFLDGRVIFVEVAKSRWELRQ 170
           M+G+ ++G +I V+VAK R   RQ
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 39/79 (49.37%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 39/79 (49.37%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+G+ ++G +I V+VAK+R
Sbjct: 360 MNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80
Identity = 157/176 (89.20%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSA PIPFFQ Q T ++NIRST   MRIQS+QS+  Y T PLPFFSVKK  SIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.6e-79
Identity = 155/176 (88.07%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSAAPIPFFQ Q   +++IRST   MRIQS+QS+  Y T P PFFSVKK  SIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 147/178 (82.58%), Postives = 156/178 (87.64%), Query Frame = 0


Query: 1   MTAGLLF--SAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHS 60
           MTAGL F  +AAP PFF  Q THH+NIRSTE HMR QS QS+  Y + PLPFFS +K  S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120
           IS+SPLFSV CVSS  SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK R ELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.8e-70
Identity = 144/180 (80.00%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MTAGLLF--SAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHS 60
           MTAGL F  +AAP PFFQ Q THH +I STE  MRI+S+QS+  Y + PLPFFS +K  S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVTCVSSSP--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFSV CVSSSP  S SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKSR ELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL
Match: A0A6J1C991 (organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008629 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 139/176 (78.98%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLL +AAP P FQ  + +H  IR TE H+RIQS+  Q  Y T PLPFF VK   +  
Sbjct: 1   MTAGLLSAAAPRPLFQTTLNNH--IRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAFKSFGQL+EVNLVMDK
Sbjct: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKSRWELRQG KENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173

[Close]

BLAST of Lcy06g000340 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 308.1 bits (788), Expect = 4.7e-80
Identity = 157/176 (89.20%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSA PIPFFQ Q T ++NIRST   MRIQS+QS+  Y T PLPFFSVKK  SIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Lcy06g000340 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 156/176 (88.64%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSA P PFFQ Q   ++NIRST   MRIQS+QS+ PY T PLPFFSVKK  SIS
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of Lcy06g000340 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 155/176 (88.07%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSAAPIPFFQ Q   +++IRST   MRIQS+QS+  Y T P PFFSVKK  SIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Lcy06g000340 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MTAGLLF--SAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHS 60
           MTAGL F  +AAP PFFQFQITHH+NIRSTE H RI S++SQ  Y + PLPFFSV+K HS
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120
           ISDSPLFS+ C SSSPSPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSR ELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of Lcy06g000340 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.4 bits (773), Expect = 2.6e-78
Identity = 155/176 (88.07%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MTAGLLFSAAPIPFFQFQITHHHNIRSTEPHMRIQSLQSQFPYCTVPLPFFSVKKIHSIS 60
           MTAGLLFSAAPIPFFQ Q   +++IRST   MRIQS+QS+  Y T PLPFFSVKK  SIS
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88

Query: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDK 120
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVMDK
Sbjct: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+WELRQGLKENSS
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of Lcy06g000340 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-33
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 52  SVKKIHSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQL 111
           S ++   I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 112 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWEL 168
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK+R ++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Lcy06g000340 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 71  SSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAF 130
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 131 LRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKENS 176
           +RYAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Lcy06g000340 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 84  STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAI 143
           S +L+VS LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + +E++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 144 EGMHGKFLDGRVIFVEVAKSRWELRQGLKENSS 177
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of Lcy06g000340 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.3 bits (225), Expect = 8.5e-19
Identity = 39/79 (49.37%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 145
           +L+++GLSF T+E++LR AF+ FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGKFLDGRVIFVEVAKSR 165
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Lcy06g000340 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 72  SSPSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKVANRPRGFA 131
           SSPS   RR S   S RL+VSGLS  TT E L++AF SFGQLV+  ++ D+ + R +GF 
Sbjct: 19  SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78

Query: 132 FLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRWELRQGLKE 174
           F+ YAT E+++KA   M+ KFLDG VIFV+ A+ R E R+ L++
Sbjct: 79  FVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR-EPRRPLQQ 121

The following BLAST results are available for this feature:

BLAST of Lcy06g000340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	2.9e-32	59.48	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	5.7e-20	47.62	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	7.0e-18	50.00	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	1.2e-17	49.37	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	2.7e-17	49.37	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]

BLAST of Lcy06g000340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDG6	2.3e-80	89.20	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GCJ4	9.6e-79	88.07	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A1S3AYF6	1.8e-72	82.58	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	4.8e-70	80.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A6J1C991	1.1e-66	78.98	organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia ...	[more]

BLAST of Lcy06g000340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998114.1	4.7e-80	89.20	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima]	[more]
XP_023525166.1	1.1e-79	88.64	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su...	[more]
XP_022949592.1	2.0e-78	88.07	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
XP_038895072.1	2.0e-78	87.08	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
KAG6607420.1	2.6e-78	88.07	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of Lcy06g000340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	2.1e-33	59.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	4.1e-21	47.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.3e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	8.5e-19	49.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	1.9e-18	50.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 86..159 e-value: 3.4E-4 score: 29.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..159 e-value: 7.1E-26 score: 102.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 e-value: 4.8E-19 score: 68.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..163 score: 19.655382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 66..169 e-value: 1.5E-29 score: 105.0
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..175
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..175
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 70..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g000340.1	Lcy06g000340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding