Lcy05g021180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g021180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	PHD-type domain-containing protein
Location	Chr05: 50302402 .. 50303147 (-)
RNA-Seq Expression	Lcy05g021180
Synteny	Lcy05g021180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGAAGCATCAAAATGGAGGGCTATCTGATTCACATAATAATACCAACTCAGATTCAAAAGAGTTCAATGGAGTAAAGAAATTGTCTGTCCAACGCAAAAGAAGCAATAAGGAAGAAGATGGTTGTTGTTGGAAAAGAGCAAAGTACGAGAGTAAGGCTACAGGAAATATTGATAGTGAAAAAAAAAATAGAGTACGGAGACATTGTGCATTTTGTGGAGGAGGAAGTGATGGAAAACCTATAATTTCAATGAAAGGTCATAAGCCTGAGAATGATGGATTTGGTGATGAAGATGGATGGCAAGGTCATCTTTTAGGCCCCATTCAGGATAGTAATGACATCCCTCGGATTTGGGTCCATTATCAATGTGTTGTTTGGAGTCCAGAGGTATATATACACTTTTTATTTTAGCATAACAAACAAAAGAGTGGAAATTTCAACATTCGACTTCAAGTGAAATAGTAAATGTCTTTATTAGTAAACGATGTTTATGTTGACGACTGATGCATACTTGTTACTTTGATCATCATATGATATAAAATCTGAAAGTTGCTCCTCTCTTGGGCTAATTTTCAGTCATCGAATGCTATAGTAGTAATAATAAATAATTTTTGTTATGGTCATATTTTGCAATATTATTCTTTTAAAAATTTTGTTGATTTAACCACATGCAGGTTCATTTTGTTGGATGGGGATCCTTGAAAAATGTAAAGACGGCTCTAAGTAGAGGAAATCCTTAA

mRNA sequence

ATGGAGTGGAAGCATCAAAATGGAGGGCTATCTGATTCACATAATAATACCAACTCAGATTCAAAAGAGTTCAATGGAGTAAAGAAATTGTCTGTCCAACGCAAAAGAAGCAATAAGGAAGAAGATGGTTGTTGTTGGAAAAGAGCAAAGTACGAGAGTAAGGCTACAGGAAATATTGATAGTGAAAAAAAAAATAGAGTACGGAGACATTGTGCATTTTGTGGAGGAGGAAGTGATGGAAAACCTATAATTTCAATGAAAGGTCATAAGCCTGAGAATGATGGATTTGGTGATGAAGATGGATGGCAAGGTCATCTTTTAGGCCCCATTCAGGATAGTAATGACATCCCTCGGATTTGGGTCCATTATCAATGTGTTGTTTGGAGTCCAGAGGTTCATTTTGTTGGATGGGGATCCTTGAAAAATGTAAAGACGGCTCTAAGTAGAGGAAATCCTTAA

Coding sequence (CDS)

ATGGAGTGGAAGCATCAAAATGGAGGGCTATCTGATTCACATAATAATACCAACTCAGATTCAAAAGAGTTCAATGGAGTAAAGAAATTGTCTGTCCAACGCAAAAGAAGCAATAAGGAAGAAGATGGTTGTTGTTGGAAAAGAGCAAAGTACGAGAGTAAGGCTACAGGAAATATTGATAGTGAAAAAAAAAATAGAGTACGGAGACATTGTGCATTTTGTGGAGGAGGAAGTGATGGAAAACCTATAATTTCAATGAAAGGTCATAAGCCTGAGAATGATGGATTTGGTGATGAAGATGGATGGCAAGGTCATCTTTTAGGCCCCATTCAGGATAGTAATGACATCCCTCGGATTTGGGTCCATTATCAATGTGTTGTTTGGAGTCCAGAGGTTCATTTTGTTGGATGGGGATCCTTGAAAAATGTAAAGACGGCTCTAAGTAGAGGAAATCCTTAA

Protein sequence

MEWKHQNGGLSDSHNNTNSDSKEFNGVKKLSVQRKRSNKEEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFCGGGSDGKPIISMKGHKPENDGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRGNP

Homology

[Close]

BLAST of Lcy05g021180 vs. ExPASy TrEMBL
Match: A0A2G9GE59 (AAA+-type ATPase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23906 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 58/130 (44.62%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 40  EEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFCGGGSDGKP--IISMKGHKPEN---- 99
           E++ C     KY + A    DS+ + ++ R C  CGGG DGKP  I+ ++G   +N    
Sbjct: 324 EDETCQNSEGKYNASAVA--DSKPRIKLGRRCGLCGGGIDGKPPKILVLEGAGSDNEAYS 383

Query: 100 -------------DGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSL 151
                        DGFGD+ GW G LLGPI D   I  IWVH QC VWSPEV+F G G L
Sbjct: 384 GSSASEEPNYDVWDGFGDQSGWLGRLLGPINDRFGIAGIWVHQQCAVWSPEVYFAGLGCL 443

[Close]

BLAST of Lcy05g021180 vs. ExPASy TrEMBL
Match: A0A4D8ZEI7 (PHD-type domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_043766 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 60  DSEKKNRVRRHCAFCGGGSDGKP--IISMKGHKPEN-----------------DGFGDED 119
           D + K ++ RHC  CGGG+DGKP  I+ ++G   +N                 DGFGD+ 
Sbjct: 367 DRKPKIKLGRHCGLCGGGTDGKPPKILLLEGAGSDNEVYSGSSASEEPNYDVCDGFGDQS 426

Query: 120 GWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRG 151
           GW G LLGPI D   I  IWVH QC VWSPEV+F G G LKNV+ AL RG
Sbjct: 427 GWLGRLLGPINDRFGIAGIWVHQQCAVWSPEVYFAGLGCLKNVRAALYRG 476

[Close]

BLAST of Lcy05g021180 vs. ExPASy TrEMBL
Match: A0A6J1DS84 (uncharacterized protein LOC111023817 OS=Momordica charantia OX=3673 GN=LOC111023817 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 18  NSDSKEFNGVKKLSVQRKRSNKEEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFCGGG 77
           + D +E  G  KL  +RK   K             S+   N + E +    RHC  CG  
Sbjct: 327 SDDREESRGALKLGSKRKMKTK------------RSEKEQNEEVEAEESSWRHCVLCG-- 386

Query: 78  SDGKPIISMKGH--------KPENDGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWS 137
             GK  ++   H          +NDGFGDEDGW G LLGP  DSN IPR+WVHYQC++WS
Sbjct: 387 --GKAKLAANSHHNHNHDHDDNDNDGFGDEDGWLGRLLGPFTDSNSIPRLWVHYQCIIWS 446

Query: 138 PEVHFVGWGSLKNVKTALSRG 151
           PEV+    G L++VK AL+RG
Sbjct: 447 PEVYVDETGRLRDVKAALNRG 451

[Close]

BLAST of Lcy05g021180 vs. ExPASy TrEMBL
Match: A0A444Y418 (PHD-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092503 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 65/163 (39.88%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 12  DSHNNTNSDSKEFNGVKKLSVQRKRSNKEE---DGCCWKRAKYESKATGNIDSEKKNRVR 71
           +   N  S+  E  G+    V+ + S  +E   D    K A Y +K      S    R++
Sbjct: 353 EKEGNNASEGAEIAGISTKQVENEGSADKEVEIDENTLKDANYVTKDKLKQASNGSQRIK 412

Query: 72  --RHCAFCGGGSDGKP---IISMKGHKPEN----------------DGFGDEDGWQGHLL 131
             R C  CGGG+DGKP   ++   G                     DGF DE GW GHLL
Sbjct: 413 EGRRCGLCGGGTDGKPPKRLLQDNGESENEAYSGSSASEEPNFDIWDGFSDEPGWLGHLL 472

Query: 132 GPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRG 151
           GPI D+  I RIWVH QC VWSPEV+F G G LKNV+ AL RG
Sbjct: 473 GPINDNFGIARIWVHQQCAVWSPEVYFAGLGCLKNVRAALYRG 515

[Close]

BLAST of Lcy05g021180 vs. ExPASy TrEMBL
Match: A0A0V0J038 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 56/121 (46.28%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 50  KYESKATGNIDSEKKNRVR--RHCAFCGGGSDGKPIISM--------KGHKPEN------ 109
           K   K   +  + +K R+R  RHC  CGGG+DGKP   +        + H   +      
Sbjct: 365 KVVKKECASDSTLRKRRIREGRHCGLCGGGTDGKPPKKLVYGAASDDEAHSGSSASDEPN 424

Query: 110 ----DGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSR 151
               DGFGDE GW G LLGPI D   I  IWVH QC VWSPEV+F G G LKNV+ AL R
Sbjct: 425 YDMWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQQCAVWSPEVYFAGLGCLKNVRAALCR 484

[Close]

BLAST of Lcy05g021180 vs. NCBI nr
Match: PIN03574.1 (AAA+-type ATPase [Handroanthus impetiginosus])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-20
Identity = 58/130 (44.62%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 40  EEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFCGGGSDGKP--IISMKGHKPEN---- 99
           E++ C     KY + A    DS+ + ++ R C  CGGG DGKP  I+ ++G   +N    
Sbjct: 324 EDETCQNSEGKYNASAVA--DSKPRIKLGRRCGLCGGGIDGKPPKILVLEGAGSDNEAYS 383

Query: 100 -------------DGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSL 151
                        DGFGD+ GW G LLGPI D   I  IWVH QC VWSPEV+F G G L
Sbjct: 384 GSSASEEPNYDVWDGFGDQSGWLGRLLGPINDRFGIAGIWVHQQCAVWSPEVYFAGLGCL 443

[Close]

BLAST of Lcy05g021180 vs. NCBI nr
Match: XP_042060630.1 (uncharacterized protein LOC121804962 [Salvia splendens] >KAG6424392.1 hypothetical protein SASPL_114810 [Salvia splendens])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-20
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 60  DSEKKNRVRRHCAFCGGGSDGKP--IISMKGHKPEN-----------------DGFGDED 119
           D + K ++ RHC  CGGG+DGKP  I+ ++G   +N                 DGFGD+ 
Sbjct: 367 DRKPKIKLGRHCGLCGGGTDGKPPKILLLEGAGSDNEVYSGSSASEEPNYDVCDGFGDQS 426

Query: 120 GWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRG 151
           GW G LLGPI D   I  IWVH QC VWSPEV+F G G LKNV+ AL RG
Sbjct: 427 GWLGRLLGPINDRFGIAGIWVHQQCAVWSPEVYFAGLGCLKNVRAALYRG 476

[Close]

BLAST of Lcy05g021180 vs. NCBI nr
Match: XP_022156988.1 (uncharacterized protein LOC111023817 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-20
Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 18  NSDSKEFNGVKKLSVQRKRSNKEEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFCGGG 77
           + D +E  G  KL  +RK   K             S+   N + E +    RHC  CG  
Sbjct: 327 SDDREESRGALKLGSKRKMKTK------------RSEKEQNEEVEAEESSWRHCVLCG-- 386

Query: 78  SDGKPIISMKGH--------KPENDGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWS 137
             GK  ++   H          +NDGFGDEDGW G LLGP  DSN IPR+WVHYQC++WS
Sbjct: 387 --GKAKLAANSHHNHNHDHDDNDNDGFGDEDGWLGRLLGPFTDSNSIPRLWVHYQCIIWS 446

Query: 138 PEVHFVGWGSLKNVKTALSRG 151
           PEV+    G L++VK AL+RG
Sbjct: 447 PEVYVDETGRLRDVKAALNRG 451

[Close]

BLAST of Lcy05g021180 vs. NCBI nr
Match: KAG8364905.1 (hypothetical protein BUALT_Bualt18G0047100 [Buddleja alternifolia])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 47  KRAKYESKATGNIDSEKKNRVRRHCAFCGGGSDGKP--IISMKGHKPEN----------- 106
           KR+  +      +D++ + ++ R C  CGGG+DGKP  I+ ++G   +N           
Sbjct: 328 KRSNAKYNELDVVDNKSRIKLGRRCGLCGGGTDGKPPKILVLEGAGSDNEAYSGSSASEE 387

Query: 107 ------DGFGDEDGWQGHLLGPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTAL 151
                 DGFGD+ GW G LLGPI D   I  IWVH QC VWSPEV+F G G LKNV+ AL
Sbjct: 388 PNYDVWDGFGDQSGWLGRLLGPINDRFGIAGIWVHQQCAVWSPEVYFAGLGCLKNVRAAL 447

[Close]

BLAST of Lcy05g021180 vs. NCBI nr
Match: QHN96267.1 (uncharacterized protein DS421_18g617000 [Arachis hypogaea])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 65/163 (39.88%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 12  DSHNNTNSDSKEFNGVKKLSVQRKRSNKEE---DGCCWKRAKYESKATGNIDSEKKNRVR 71
           +   N  S+  E  G+    V+ + S  +E   D    K A Y +K      S    R++
Sbjct: 353 EKEGNNASEGAEIAGISTKQVENEGSADKEVEIDENTLKDANYVTKDKLKQASNGSQRIK 412

Query: 72  --RHCAFCGGGSDGKP---IISMKGHKPEN----------------DGFGDEDGWQGHLL 131
             R C  CGGG+DGKP   ++   G                     DGF DE GW GHLL
Sbjct: 413 EGRRCGLCGGGTDGKPPKRLLQDNGESENEAYSGSSASEEPNFDIWDGFSDEPGWLGHLL 472

Query: 132 GPIQDSNDIPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRG 151
           GPI D+  I RIWVH QC VWSPEV+F G G LKNV+ AL RG
Sbjct: 473 GPINDNFGIARIWVHQQCAVWSPEVYFAGLGCLKNVRAALYRG 515

[Close]

BLAST of Lcy05g021180 vs. TAIR 10
Match: AT3G15120.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 55/155 (35.48%), Postives = 70/155 (45.16%), Query Frame = 0


Query: 15  NNTNSDSKEFNGVKKLSVQRKRSNKEEDGCCWKRAKYESKATGNIDSEKKNRVRRHCAFC 74
           NN   +  EF      SV+       ++  C K     S ++  +      + RR C  C
Sbjct: 436 NNKTKEHNEFLDRGGESVEMPDELPIQNETCKKAVDSVSTSSDRLGKPLFKQTRR-CGLC 495

Query: 75  GGGSDGK----------------PIISMKGHKPEN---DGFGDEDGWQGHLLGPIQDSND 134
           G G+DGK                P  S    + +    DGFGD+ GW G LLGPI D   
Sbjct: 496 GVGTDGKLPKKLMQDNGDSDVEAPSGSSSSEEQKYDILDGFGDDPGWLGRLLGPINDRYG 555

Query: 135 IPRIWVHYQCVVWSPEVHFVGWGSLKNVKTALSRG 151
           I   WVH  C VWSPEV+F G G LKN++ AL RG
Sbjct: 556 ISGTWVHQNCAVWSPEVYFAGVGCLKNIRAALFRG 589

The following BLAST results are available for this feature:

BLAST of Lcy05g021180 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g021180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9GE59	2.3e-20	44.62	AAA+-type ATPase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23906 PE=4 SV=...	[more]
A0A4D8ZEI7	2.3e-20	49.09	PHD-type domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_043766...	[more]
A0A6J1DS84	3.0e-20	41.84	uncharacterized protein LOC111023817 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A444Y418	2.0e-19	39.88	PHD-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092503...	[more]
A0A0V0J038	2.6e-19	46.28	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

BLAST of Lcy05g021180 vs. NCBI nr


Match Name	E-value	Identity	Description
PIN03574.1	4.8e-20	44.62	AAA+-type ATPase [Handroanthus impetiginosus]	[more]
XP_042060630.1	4.8e-20	49.09	uncharacterized protein LOC121804962 [Salvia splendens] >KAG6424392.1 hypothetic...	[more]
XP_022156988.1	6.2e-20	41.84	uncharacterized protein LOC111023817 [Momordica charantia]	[more]
KAG8364905.1	2.4e-19	43.90	hypothetical protein BUALT_Bualt18G0047100 [Buddleja alternifolia]	[more]
QHN96267.1	4.0e-19	39.88	uncharacterized protein DS421_18g617000 [Arachis hypogaea]	[more]

BLAST of Lcy05g021180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15120.1	2.0e-16	35.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	PANTHER	PTHR23069:SF7	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	coord: 21..151
None	No IPR available	PANTHER	PTHR23069	AAA DOMAIN-CONTAINING	coord: 21..151
IPR034732	Extended PHD (ePHD) domain	PROSITE	PS51805	EPHD	coord: 68..152 score: 10.4667

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g021180.1	Lcy05g021180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding