Lcy05g021140 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g021140
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRrna intron-encoded homing endonuclease
LocationChr05: 50220652 .. 50220964 (+)
RNA-Seq ExpressionLcy05g021140
SyntenyLcy05g021140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTAGATGTTCTGGGCTGCACGCTCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCTTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGAATCGCGGCGACGTGGGTGGTTCGCTGCCCTCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

mRNA sequence

ATGCCGTTAGATATCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCTTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGAATCGCGGCGACGTGGGTGGTTCGCTGCCCTCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATGCCGTTAGATATCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCTTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGAATCGCGGCGACGTGGGTGGTTCGCTGCCCTCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Protein sequence

MPLDIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARSPLNLII
Homology
[Close]
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match: A0A5C7H450 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 4  DIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVAR 63
          +IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRG FAA DVAR
Sbjct: 33 EIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAACDVAR 92

Query: 64 SPLNLII 71
          SPLNLII
Sbjct: 93 SPLNLII 99

[Close]
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match: A0A4U5PNX9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 4   DIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVAR 63
           +IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRG FAA DVAR
Sbjct: 51  EIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVAR 110

Query: 64  SPLNLII 71
           SPLNLII
Sbjct: 111 SPLNLII 117

[Close]
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match: A0A4U5R3F9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000013030 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 4   DIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVAR 63
           +IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRG FAA DVAR
Sbjct: 51  EIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVAR 110

Query: 64  SPLNLII 71
           SPLNLI+
Sbjct: 111 SPLNLIV 117

[Close]
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match: A0A0P1AX64 (Rrna intron-encoded homing endonuclease OS=Plasmopara halstedii OX=4781 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MPLDIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALD 60
          MPLDIIAIVGL++GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEV  S RRG FAA D
Sbjct: 1  MPLDIIAIVGLKRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVLGSWRRGRFAARD 60

Query: 61 VARSPLNLII 71
          VAR PLNLII
Sbjct: 61 VARIPLNLII 70

[Close]
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match: A0A2P5W8Y1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.4e-25
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 4  DIIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVAR 63
          +IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF S RRG FAA DVAR
Sbjct: 33 EIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSWRRGRFAARDVAR 92

Query: 64 SPLNLII 71
          SPLNLII
Sbjct: 93 SPLNLII 99

[Close]
BLAST of Lcy05g021140 vs. NCBI nr
Match: XP_018505180.1 (PREDICTED: uncharacterized protein LOC108867875, partial [Pyrus x bretschneideri])

HSP 1 Score: 130.6 bits (327), Expect = 5.4e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 5   IIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARS 64
           IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRGWFAA DVARS
Sbjct: 341 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 400

Query: 65  PLNLII 71
           PLNLII
Sbjct: 401 PLNLII 406

[Close]
BLAST of Lcy05g021140 vs. NCBI nr
Match: XP_018505183.1 (PREDICTED: uncharacterized protein LOC108867880 [Pyrus x bretschneideri])

HSP 1 Score: 130.6 bits (327), Expect = 5.4e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 5   IIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARS 64
           IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRGWFAA DVARS
Sbjct: 421 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 480

Query: 65  PLNLII 71
           PLNLII
Sbjct: 481 PLNLII 486

[Close]
BLAST of Lcy05g021140 vs. NCBI nr
Match: XP_018501704.1 (PREDICTED: uncharacterized protein LOC108866852, partial [Pyrus x bretschneideri])

HSP 1 Score: 130.6 bits (327), Expect = 5.4e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 5   IIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARS 64
           IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRGWFAA DVARS
Sbjct: 441 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 500

Query: 65  PLNLII 71
           PLNLII
Sbjct: 501 PLNLII 506

[Close]
BLAST of Lcy05g021140 vs. NCBI nr
Match: XP_009366572.1 (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 130.6 bits (327), Expect = 5.4e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 5   IIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARS 64
           IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRGWFAA DVARS
Sbjct: 725 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 784

Query: 65  PLNLII 71
           PLNLII
Sbjct: 785 PLNLII 790

[Close]
BLAST of Lcy05g021140 vs. NCBI nr
Match: XP_018505181.1 (PREDICTED: uncharacterized protein LOC108867878 [Pyrus x bretschneideri])

HSP 1 Score: 130.6 bits (327), Expect = 5.4e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 5   IIAIVGLQQGIPSKRESSARVDYVPAFCTHRPSLLPIEWSGEVFESRRRGWFAALDVARS 64
           IIAIVGLQ+GIPSKRESSARVDYVPA CTHRPSLLPIEWSGEVF SRRRGWFAA DVARS
Sbjct: 431 IIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARS 490

Query: 65  PLNLII 71
           PLNLII
Sbjct: 491 PLNLII 496

The following BLAST results are available for this feature:
BLAST of Lcy05g021140 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g021140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5C7H4504.9e-2691.04Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1[more]
A0A4U5PNX91.1e-2591.04Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1[more]
A0A4U5R3F91.4e-2589.55Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000013030 PE=4 SV=1[more]
A0A0P1AX641.9e-2587.14Rrna intron-encoded homing endonuclease OS=Plasmopara halstedii OX=4781 PE=4 SV=... [more]
A0A2P5W8Y15.4e-2589.55Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV... [more]
BLAST of Lcy05g021140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_018505180.15.4e-2793.94PREDICTED: uncharacterized protein LOC108867875, partial [Pyrus x bretschneideri... [more]
XP_018505183.15.4e-2793.94PREDICTED: uncharacterized protein LOC108867880 [Pyrus x bretschneideri][more]
XP_018501704.15.4e-2793.94PREDICTED: uncharacterized protein LOC108866852, partial [Pyrus x bretschneideri... [more]
XP_009366572.15.4e-2793.94PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri][more]
XP_018505181.15.4e-2793.94PREDICTED: uncharacterized protein LOC108867878 [Pyrus x bretschneideri][more]
BLAST of Lcy05g021140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g021140.1Lcy05g021140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
molecular_function GO:0004519 endonuclease activity