Lcy05g020640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g020640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CACTA en-spm transposon protein
Location	Chr05: 48736722 .. 48737244 (-)
RNA-Seq Expression	Lcy05g020640
Synteny	Lcy05g020640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAAGAATAAACAGGATCGTGCCAAACTTCCTTTCAACCACTACGTTGGGTCGAAATCATTTCTTCACATACAATAGAAAAATGTAAGTTCAAAAATAATCTTAAGGGTAAACTATTTTTTTTTCTAATATTACTAATATGTGTGGAATTTGAATTACAGAAAACTAGAGAAGGTGAGAATTTGGGACCTATTGACTTATGTCATAATACCAAATACAAGGAAATGGGTGGGTTAGTCAAGCCGCCAATAAAGCTCATGTAAGTTTTCAACTTATAAAGTATTCTAATGAAAGTATCTACTTCATTACTTATTTGAATTTTCCCACCCAAGATGGGACCCAACGTCCTAAACCAGATGACATATGCGAATCTGTTTTGGGTAGTCGATCGGATCAAACTAAAGGGCTTGGTTGGAGACCAAAGCCGAAGTCGAGAAAGTGTACCTCCTCATCCAATGCAACTTCATTAAGACAAGAGCATGAACTAAGTGCAGTCTTGAGTGAGACCCAAGAATAG

mRNA sequence

ATGGGTGAGAAGAATAAACAGGATCGTGCCAAACTTCCTTTCAACCACTACAAAACTAGAGAAGATGGGACCCAACGTCCTAAACCAGATGACATATGCGAATCTGTTTTGGGTAGTCGATCGGATCAAACTAAAGGGCTTGGTTGGAGACCAAAGCCGAAGTCGAGAAAGTGTACCTCCTCATCCAATGCAACTTCATTAAGACAAGAGCATGAACTAAGTGCAGTCTTGAGTGAGACCCAAGAATAG

Coding sequence (CDS)

ATGGGTGAGAAGAATAAACAGGATCGTGCCAAACTTCCTTTCAACCACTACAAAACTAGAGAAGATGGGACCCAACGTCCTAAACCAGATGACATATGCGAATCTGTTTTGGGTAGTCGATCGGATCAAACTAAAGGGCTTGGTTGGAGACCAAAGCCGAAGTCGAGAAAGTGTACCTCCTCATCCAATGCAACTTCATTAAGACAAGAGCATGAACTAAGTGCAGTCTTGAGTGAGACCCAAGAATAG

Protein sequence

MGEKNKQDRAKLPFNHYKTREDGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNATSLRQEHELSAVLSETQE

Homology

[Close]

BLAST of Lcy05g020640 vs. ExPASy TrEMBL
Match: A0A5D3CL27 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00250 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 30 DDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAVLSETQE 83
          D+IC+ VLG R D +KGLGW PKPK RK TS+S++T     S+ +E EL A L+ET E
Sbjct: 9  DEICDQVLGRRPDYSKGLGWEPKPKVRKTTSASSSTTSCPQSIEKEIELQAKLNETLE 66

[Close]

BLAST of Lcy05g020640 vs. ExPASy TrEMBL
Match: A0A5D3BGG2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00580 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           +G+Q    D+IC  VLG RS  +KGLGWRPKPK+R+ TS+++++     S ++E EL A 
Sbjct: 79  EGSQPLSEDEICNQVLGRRSGYSKGLGWRPKPKARRTTSANSSSTSCSQSTQKEIELQAK 138

Query: 82  LSETQE 83
           L+E  E
Sbjct: 139 LNEVLE 144

[Close]

BLAST of Lcy05g020640 vs. ExPASy TrEMBL
Match: A0A5D3D3W6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001120 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           DG+Q P  D+IC+ VLG R   +KGLGW PKPK+R+  S+S+++     S  +E EL A 
Sbjct: 144 DGSQPPSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSRSCSQSTEKEIELQAK 203

Query: 82  LSETQE 83
           L E  E
Sbjct: 204 LHEALE 209

[Close]

BLAST of Lcy05g020640 vs. ExPASy TrEMBL
Match: A0A5A7TT86 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00010 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           DG+Q P  D+IC+ VLG R   +KGLGW PKPK+R+  S+S+++     S  +E EL A 
Sbjct: 162 DGSQPPSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSRSCSQSTEKEIELQAK 221

Query: 82  LSETQE 83
           L E  E
Sbjct: 222 LHEALE 227

[Close]

BLAST of Lcy05g020640 vs. ExPASy TrEMBL
Match: A0A5A7SQ91 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00560 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 23  GTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAVL 82
           G+Q    D+IC  VLG RS  +KGLGWRPKPK+R+ TS+++++     S ++E EL A L
Sbjct: 67  GSQPLSEDEICNQVLGRRSGYSKGLGWRPKPKARRTTSANSSSTSCSQSTQKEIELQAKL 126

[Close]

BLAST of Lcy05g020640 vs. NCBI nr
Match: TYK11874.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 30 DDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAVLSETQE 83
          D+IC+ VLG R D +KGLGW PKPK RK TS+S++T     S+ +E EL A L+ET E
Sbjct: 9  DEICDQVLGRRPDYSKGLGWEPKPKVRKTTSASSSTTSCPQSIEKEIELQAKLNETLE 66

[Close]

BLAST of Lcy05g020640 vs. NCBI nr
Match: TYJ98333.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           +G+Q    D+IC  VLG RS  +KGLGWRPKPK+R+ TS+++++     S ++E EL A 
Sbjct: 79  EGSQPLSEDEICNQVLGRRSGYSKGLGWRPKPKARRTTSANSSSTSCSQSTQKEIELQAK 138

Query: 82  LSETQE 83
           L+E  E
Sbjct: 139 LNEVLE 144

[Close]

BLAST of Lcy05g020640 vs. NCBI nr
Match: KAA0046642.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           DG+Q P  D+IC+ VLG R   +KGLGW PKPK+R+  S+S+++     S  +E EL A 
Sbjct: 162 DGSQPPSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSRSCSQSTEKEIELQAK 221

Query: 82  LSETQE 83
           L E  E
Sbjct: 222 LHEALE 227

[Close]

BLAST of Lcy05g020640 vs. NCBI nr
Match: TYK18179.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 22  DGTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAV 81
           DG+Q P  D+IC+ VLG R   +KGLGW PKPK+R+  S+S+++     S  +E EL A 
Sbjct: 144 DGSQPPSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSRSCSQSTEKEIELQAK 203

Query: 82  LSETQE 83
           L E  E
Sbjct: 204 LHEALE 209

[Close]

BLAST of Lcy05g020640 vs. NCBI nr
Match: KAA0032543.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 23  GTQRPKPDDICESVLGSRSDQTKGLGWRPKPKSRKCTSSSNAT-----SLRQEHELSAVL 82
           G+Q    D+IC  VLG RS  +KGLGWRPKPK+R+ TS+++++     S ++E EL A L
Sbjct: 67  GSQPLSEDEICNQVLGRRSGYSKGLGWRPKPKARRTTSANSSSTSCSQSTQKEIELQAKL 126

The following BLAST results are available for this feature:

BLAST of Lcy05g020640 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g020640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CL27	8.7e-06	55.17	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BGG2	5.6e-05	46.97	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3D3W6	7.3e-05	46.97	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TT86	7.3e-05	46.97	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ91	9.6e-05	47.69	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Lcy05g020640 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11874.1	1.8e-05	55.17	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa]	[more]
TYJ98333.1	1.2e-04	46.97	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046642.1	1.5e-04	46.97	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK18179.1	1.5e-04	46.97	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0032543.1	2.0e-04	47.69	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy05g020640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g020640.1	Lcy05g020640.1	mRNA